Wall clock time and date at job start Tue Mar 31 2020 04:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 120.00282 * 2 1 4 4 H 1.48496 * 109.47199 * 270.00028 * 3 2 1 5 5 H 1.48500 * 109.47011 * 29.99824 * 3 2 1 6 6 H 1.48498 * 109.47033 * 149.99953 * 3 2 1 7 7 C 1.38815 * 119.99879 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99919 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99755 * 359.97438 * 7 2 1 10 10 C 1.46505 * 119.99775 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.49508 * 34.93328 * 10 9 7 12 12 C 1.53040 * 109.49861 * 155.00152 * 10 9 7 13 13 C 1.53038 * 109.53645 * 181.31347 * 12 10 9 14 14 C 1.53195 * 109.31261 * 298.63325 * 13 12 10 15 15 N 1.46928 * 108.77567 * 54.63937 * 14 13 12 16 16 C 1.34777 * 120.63109 * 126.36927 * 15 14 13 17 17 O 1.21280 * 119.99738 * 180.02562 * 16 15 14 18 18 C 1.50693 * 120.00207 * 359.97438 * 16 15 14 19 19 C 1.50703 * 109.47440 * 180.02562 * 18 16 15 20 20 N 1.32612 * 125.18056 * 269.98211 * 19 18 16 21 21 C 1.32833 * 109.75229 * 180.02562 * 20 19 18 22 22 N 1.33822 * 132.49748 * 179.97438 * 21 20 19 23 23 C 1.31351 * 120.85960 * 180.02562 * 22 21 20 24 24 C 1.40045 * 120.31458 * 0.02562 * 23 22 21 25 25 C 1.35786 * 119.23693 * 0.23070 * 24 23 22 26 26 N 1.35978 * 119.02298 * 359.53856 * 25 24 23 27 27 N 1.31173 * 125.18467 * 89.99722 * 19 18 16 28 28 C 1.46931 * 118.73370 * 306.63940 * 15 14 13 29 29 H 0.97008 * 119.99825 * 0.02562 * 1 2 3 30 30 H 0.97000 * 120.00113 * 0.02562 * 9 7 2 31 31 H 1.09002 * 109.45429 * 61.29511 * 12 10 9 32 32 H 1.08995 * 109.44854 * 301.33297 * 12 10 9 33 33 H 1.09002 * 109.49572 * 178.68665 * 13 12 10 34 34 H 1.08993 * 109.52454 * 58.60310 * 13 12 10 35 35 H 1.09000 * 109.58956 * 294.84999 * 14 13 12 36 36 H 1.09001 * 109.58752 * 174.42349 * 14 13 12 37 37 H 1.08998 * 109.46908 * 60.00122 * 18 16 15 38 38 H 1.08999 * 109.47262 * 300.00504 * 18 16 15 39 39 H 1.08000 * 119.83995 * 179.97438 * 23 22 21 40 40 H 1.08000 * 120.38190 * 180.02562 * 24 23 22 41 41 H 1.07995 * 120.48515 * 179.70551 * 25 24 23 42 42 H 1.09002 * 109.58308 * 173.14348 * 28 15 14 43 43 H 1.08994 * 109.58612 * 293.56585 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 2.9693 -3.5507 0.5878 12 6 1.1810 -4.7529 0.6091 13 6 1.9572 -6.0715 0.6396 14 6 2.3171 -6.4807 -0.7922 15 7 3.0362 -5.3720 -1.4343 16 6 4.2393 -5.5741 -2.0073 17 8 4.8230 -4.6505 -2.5337 18 6 4.8596 -6.9474 -1.9928 19 6 6.1935 -6.9035 -2.6928 20 7 6.3835 -7.1113 -3.9886 21 6 7.6755 -6.9996 -4.2765 22 7 8.3604 -7.1180 -5.4200 23 6 9.6640 -6.9581 -5.4442 24 6 10.3616 -6.6601 -4.2671 25 6 9.6755 -6.5432 -3.1011 26 7 8.3260 -6.7098 -3.1102 27 7 7.3435 -6.6544 -2.1130 28 6 2.4216 -4.0375 -1.4346 29 1 -0.4850 0.8401 -0.0004 30 1 0.3555 -2.3880 -0.0005 31 1 0.2811 -4.8751 0.0063 32 1 0.9025 -4.4719 1.6247 33 1 1.3405 -6.8463 1.0952 34 1 2.8697 -5.9437 1.2217 35 1 1.4063 -6.6974 -1.3503 36 1 2.9538 -7.3652 -0.7703 37 1 4.2021 -7.6485 -2.5067 38 1 5.0013 -7.2712 -0.9617 39 1 10.2004 -7.0579 -6.3763 40 1 11.4333 -6.5280 -4.2858 41 1 10.1938 -6.3186 -2.1806 42 1 3.1272 -3.3103 -1.8365 43 1 1.5194 -4.0508 -2.0462 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000910726.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:00 Heat of formation + Delta-G solvation = 122.473343 kcal Electronic energy + Delta-G solvation = -27436.025478 eV Core-core repulsion = 23519.516957 eV Total energy + Delta-G solvation = -3916.508521 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.17044 -40.06042 -39.04830 -37.28686 -34.88300 -34.50269 -32.77248 -32.21491 -31.19052 -30.97808 -29.83435 -28.06199 -25.36293 -24.83283 -24.11049 -23.85289 -21.88572 -21.74274 -20.14522 -18.87762 -18.66754 -18.35053 -17.34168 -17.07818 -16.66842 -16.53252 -15.63161 -15.38783 -14.96501 -14.66064 -14.20139 -14.00941 -13.79043 -13.69892 -13.43535 -13.41911 -13.00879 -12.94620 -12.85476 -12.48860 -12.34251 -12.24590 -12.03009 -11.34241 -11.03239 -10.83257 -10.66171 -10.57480 -10.41275 -10.33667 -10.19380 -10.04364 -9.81170 -9.73786 -9.51270 -9.10184 -9.06042 -8.34546 -6.98970 -5.77644 -3.07264 0.06230 0.39039 1.57964 2.19370 2.76285 2.89434 3.09154 3.28224 3.46069 3.51296 3.52842 3.61008 3.89139 4.15780 4.42069 4.55356 4.60106 4.63182 4.87992 4.90803 5.05113 5.09501 5.12549 5.25550 5.43909 5.49571 5.56215 5.60824 5.79928 5.81784 5.89962 5.94359 5.96898 6.04732 6.17748 6.22116 6.36583 6.50413 6.73341 6.85033 7.02217 7.09137 7.62144 7.66934 7.73038 8.34275 8.41044 9.52519 10.06447 10.41793 11.44623 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.013886 B = 0.002735 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.006957 B =10234.263714 C =11695.055764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.011 4.011 3 Si 0.907 3.093 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.242 4.242 8 H 0.071 0.929 9 N -0.718 5.718 10 C 0.168 3.832 11 H 0.050 0.950 12 C -0.126 4.126 13 C -0.131 4.131 14 C 0.104 3.896 15 N -0.604 5.604 16 C 0.520 3.480 17 O -0.532 6.532 18 C -0.053 4.053 19 C 0.302 3.698 20 N -0.511 5.511 21 C 0.441 3.559 22 N -0.453 5.453 23 C 0.204 3.796 24 C -0.228 4.228 25 C 0.175 3.825 26 N -0.326 5.326 27 N -0.320 5.320 28 C 0.094 3.906 29 H 0.256 0.744 30 H 0.386 0.614 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.127 0.873 38 H 0.123 0.877 39 H 0.190 0.810 40 H 0.174 0.826 41 H 0.183 0.817 42 H 0.090 0.910 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.111 -21.574 -4.822 28.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.207 4.207 3 Si 0.738 3.262 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.373 4.373 8 H 0.089 0.911 9 N -0.359 5.359 10 C 0.057 3.943 11 H 0.068 0.932 12 C -0.165 4.165 13 C -0.169 4.169 14 C -0.019 4.019 15 N -0.338 5.338 16 C 0.305 3.695 17 O -0.408 6.408 18 C -0.095 4.095 19 C 0.021 3.979 20 N -0.242 5.242 21 C 0.081 3.919 22 N -0.168 5.168 23 C 0.017 3.983 24 C -0.253 4.253 25 C 0.037 3.963 26 N -0.105 5.105 27 N -0.151 5.151 28 C -0.030 4.030 29 H 0.065 0.935 30 H 0.220 0.780 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.097 0.903 37 H 0.145 0.855 38 H 0.141 0.859 39 H 0.207 0.793 40 H 0.192 0.808 41 H 0.200 0.800 42 H 0.108 0.892 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 17.484 -21.039 -5.158 27.838 hybrid contribution 0.841 1.197 0.501 1.546 sum 18.326 -19.842 -4.657 27.408 Atomic orbital electron populations 1.69662 1.05097 1.25747 1.57513 1.24742 0.95520 0.97732 1.02688 0.86191 0.78693 0.83724 0.77629 1.21609 1.21737 1.20710 1.19266 0.91081 0.83997 1.42954 0.91104 1.42373 1.05804 0.99567 1.88108 1.20415 0.94939 0.86508 0.92467 0.93180 1.21824 0.98717 0.94077 1.01857 1.21890 1.01015 0.98277 0.95748 1.21805 0.97207 0.88829 0.94038 1.48218 1.18520 1.11319 1.55723 1.19949 0.81342 0.89311 0.78920 1.90754 1.61445 1.44046 1.44550 1.20127 0.88896 0.98471 1.02040 1.23555 0.94459 0.91977 0.87913 1.70681 1.10459 1.28812 1.14281 1.22721 0.89640 0.95970 0.83571 1.68008 1.08901 1.17986 1.21857 1.23583 0.88264 0.87127 0.99277 1.21948 1.03257 1.08319 0.91751 1.22184 0.79883 0.92497 1.01739 1.48773 1.07516 1.44009 1.10194 1.78551 0.96051 1.31917 1.08564 1.22717 0.97869 0.81351 1.01094 0.93466 0.78038 0.91953 0.91372 0.90857 0.91510 0.90990 0.90259 0.85510 0.85903 0.79294 0.80819 0.80019 0.89204 0.91903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.32 13.06 55.49 0.72 -27.60 16 2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 3 Si 0.91 23.05 29.55 -169.99 -5.02 18.03 16 4 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 5 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 6 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.24 -6.86 9.93 -15.06 -0.15 -7.01 16 8 H 0.07 2.01 7.83 -52.49 -0.41 1.60 16 9 N -0.72 -18.05 5.12 -53.52 -0.27 -18.33 16 10 C 0.17 3.36 2.91 -68.03 -0.20 3.16 16 11 H 0.05 1.08 8.08 -51.93 -0.42 0.66 16 12 C -0.13 -1.96 5.36 -26.69 -0.14 -2.10 16 13 C -0.13 -1.48 6.08 -26.61 -0.16 -1.64 16 14 C 0.10 1.13 6.34 -3.71 -0.02 1.10 16 15 N -0.60 -9.36 2.98 -173.03 -0.52 -9.87 16 16 C 0.52 8.70 7.69 -10.99 -0.08 8.62 16 17 O -0.53 -11.64 15.45 5.56 0.09 -11.55 16 18 C -0.05 -0.65 4.67 -29.04 -0.14 -0.79 16 19 C 0.30 4.69 6.59 -157.02 -1.03 3.65 16 20 N -0.51 -8.61 11.25 -11.80 -0.13 -8.74 16 21 C 0.44 6.52 8.99 -323.13 -2.91 3.62 16 22 N -0.45 -5.39 10.48 -13.82 -0.14 -5.54 16 23 C 0.20 1.23 11.27 -17.08 -0.19 1.04 16 24 C -0.23 -0.95 10.07 -39.78 -0.40 -1.35 16 25 C 0.18 1.28 11.32 -16.59 -0.19 1.09 16 26 N -0.33 -4.22 3.91 -13.84 -0.05 -4.27 16 27 N -0.32 -4.87 12.78 32.39 0.41 -4.45 16 28 C 0.09 1.82 5.99 -3.93 -0.02 1.80 16 29 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 30 H 0.39 10.15 7.80 -40.82 -0.32 9.83 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.08 0.60 5.93 -51.93 -0.31 0.29 16 37 H 0.13 1.21 7.94 -51.93 -0.41 0.79 16 38 H 0.12 1.13 7.69 -51.93 -0.40 0.73 16 39 H 0.19 0.26 8.06 -52.49 -0.42 -0.17 16 40 H 0.17 -0.06 8.06 -52.49 -0.42 -0.49 16 41 H 0.18 0.71 8.06 -52.49 -0.42 0.29 16 42 H 0.09 2.08 7.01 -51.93 -0.36 1.71 16 43 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 LS Contribution 362.21 15.07 5.46 5.46 Total: -1.00 -40.57 362.21 -10.77 -51.34 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -5.57 Total: 4.74 kcal Atomic # 6 Polarization: 16.52 SS G_CDS: -5.74 Total: 10.78 kcal Atomic # 7 Polarization: -78.81 SS G_CDS: 0.02 Total: -78.80 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: 0.09 Total: -11.55 kcal Atomic # 14 Polarization: 23.05 SS G_CDS: -5.02 Total: 18.03 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -40.57 -10.77 -51.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000910726.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.812 kcal (2) G-P(sol) polarization free energy of solvation -40.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds