Wall clock time and date at job start Tue Mar 31 2020 04:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 120.00282 * 2 1 4 4 H 1.48496 * 109.47199 * 270.00028 * 3 2 1 5 5 H 1.48500 * 109.47011 * 29.99824 * 3 2 1 6 6 H 1.48498 * 109.47033 * 149.99953 * 3 2 1 7 7 C 1.38815 * 119.99879 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99919 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99755 * 359.97438 * 7 2 1 10 10 C 1.46505 * 119.99775 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.49508 * 34.93328 * 10 9 7 12 12 C 1.53040 * 109.49861 * 155.00152 * 10 9 7 13 13 C 1.53038 * 109.53645 * 181.31347 * 12 10 9 14 14 C 1.53195 * 109.31261 * 298.63325 * 13 12 10 15 15 N 1.46928 * 108.77567 * 54.63937 * 14 13 12 16 16 C 1.34777 * 120.63109 * 126.36927 * 15 14 13 17 17 O 1.21280 * 119.99738 * 180.02562 * 16 15 14 18 18 C 1.50693 * 120.00207 * 359.97438 * 16 15 14 19 19 C 1.50703 * 109.47440 * 180.02562 * 18 16 15 20 20 N 1.32612 * 125.18056 * 269.98211 * 19 18 16 21 21 C 1.32833 * 109.75229 * 180.02562 * 20 19 18 22 22 N 1.33822 * 132.49748 * 179.97438 * 21 20 19 23 23 C 1.31351 * 120.85960 * 180.02562 * 22 21 20 24 24 C 1.40045 * 120.31458 * 0.02562 * 23 22 21 25 25 C 1.35786 * 119.23693 * 0.23070 * 24 23 22 26 26 N 1.35978 * 119.02298 * 359.53856 * 25 24 23 27 27 N 1.31173 * 125.18467 * 89.99722 * 19 18 16 28 28 C 1.46931 * 118.73370 * 306.63940 * 15 14 13 29 29 H 0.97008 * 119.99825 * 0.02562 * 1 2 3 30 30 H 0.97000 * 120.00113 * 0.02562 * 9 7 2 31 31 H 1.09002 * 109.45429 * 61.29511 * 12 10 9 32 32 H 1.08995 * 109.44854 * 301.33297 * 12 10 9 33 33 H 1.09002 * 109.49572 * 178.68665 * 13 12 10 34 34 H 1.08993 * 109.52454 * 58.60310 * 13 12 10 35 35 H 1.09000 * 109.58956 * 294.84999 * 14 13 12 36 36 H 1.09001 * 109.58752 * 174.42349 * 14 13 12 37 37 H 1.08998 * 109.46908 * 60.00122 * 18 16 15 38 38 H 1.08999 * 109.47262 * 300.00504 * 18 16 15 39 39 H 1.08000 * 119.83995 * 179.97438 * 23 22 21 40 40 H 1.08000 * 120.38190 * 180.02562 * 24 23 22 41 41 H 1.07995 * 120.48515 * 179.70551 * 25 24 23 42 42 H 1.09002 * 109.58308 * 173.14348 * 28 15 14 43 43 H 1.08994 * 109.58612 * 293.56585 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 2.9693 -3.5507 0.5878 12 6 1.1810 -4.7529 0.6091 13 6 1.9572 -6.0715 0.6396 14 6 2.3171 -6.4807 -0.7922 15 7 3.0362 -5.3720 -1.4343 16 6 4.2393 -5.5741 -2.0073 17 8 4.8230 -4.6505 -2.5337 18 6 4.8596 -6.9474 -1.9928 19 6 6.1935 -6.9035 -2.6928 20 7 6.3835 -7.1113 -3.9886 21 6 7.6755 -6.9996 -4.2765 22 7 8.3604 -7.1180 -5.4200 23 6 9.6640 -6.9581 -5.4442 24 6 10.3616 -6.6601 -4.2671 25 6 9.6755 -6.5432 -3.1011 26 7 8.3260 -6.7098 -3.1102 27 7 7.3435 -6.6544 -2.1130 28 6 2.4216 -4.0375 -1.4346 29 1 -0.4850 0.8401 -0.0004 30 1 0.3555 -2.3880 -0.0005 31 1 0.2811 -4.8751 0.0063 32 1 0.9025 -4.4719 1.6247 33 1 1.3405 -6.8463 1.0952 34 1 2.8697 -5.9437 1.2217 35 1 1.4063 -6.6974 -1.3503 36 1 2.9538 -7.3652 -0.7703 37 1 4.2021 -7.6485 -2.5067 38 1 5.0013 -7.2712 -0.9617 39 1 10.2004 -7.0579 -6.3763 40 1 11.4333 -6.5280 -4.2858 41 1 10.1938 -6.3186 -2.1806 42 1 3.1272 -3.3103 -1.8365 43 1 1.5194 -4.0508 -2.0462 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000910726.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:59 Heat of formation + Delta-G solvation = 93.176088 kcal Electronic energy + Delta-G solvation = -27437.295902 eV Core-core repulsion = 23519.516957 eV Total energy + Delta-G solvation = -3917.778945 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.00711 -41.31244 -39.85203 -38.69397 -36.25768 -35.65200 -34.12764 -33.37418 -32.73786 -31.82528 -30.95666 -29.60972 -26.49947 -25.89960 -25.61106 -24.80694 -23.26078 -22.79065 -21.52778 -20.07167 -19.48224 -19.15972 -19.11069 -18.48649 -17.57812 -17.21619 -16.90551 -16.69284 -16.42438 -15.64936 -15.54352 -15.43030 -15.24939 -14.88020 -14.68072 -14.30825 -14.04993 -14.02803 -13.78188 -13.72901 -13.64917 -13.19931 -13.11408 -13.07853 -12.93360 -12.50619 -12.23858 -12.01940 -11.88529 -11.68632 -11.38977 -11.34516 -11.17227 -11.03909 -11.03289 -10.63505 -9.92515 -9.77975 -9.04705 -8.01939 -5.30995 -0.51328 -0.34597 0.85316 1.27067 1.40288 1.42727 1.50553 1.51551 1.97938 2.25612 2.39074 2.50470 2.78689 3.30897 3.33828 3.48420 3.53132 3.77632 3.94058 4.01017 4.07785 4.13686 4.21008 4.25084 4.34847 4.39383 4.39483 4.52714 4.63666 4.76820 4.84228 4.88910 4.91190 5.01051 5.05670 5.09570 5.17718 5.36291 5.37973 5.42001 5.48721 5.56006 6.21181 6.36950 6.39085 6.77531 7.07874 7.27569 8.00228 8.25601 9.20672 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.013886 B = 0.002735 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.006957 B =10234.263714 C =11695.055764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.067 4.067 3 Si 0.967 3.033 4 H -0.290 1.290 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.246 4.246 8 H 0.062 0.938 9 N -0.730 5.730 10 C 0.167 3.833 11 H 0.030 0.970 12 C -0.119 4.119 13 C -0.121 4.121 14 C 0.096 3.904 15 N -0.600 5.600 16 C 0.514 3.486 17 O -0.596 6.596 18 C -0.041 4.041 19 C 0.284 3.716 20 N -0.561 5.561 21 C 0.419 3.581 22 N -0.497 5.497 23 C 0.212 3.788 24 C -0.189 4.189 25 C 0.142 3.858 26 N -0.334 5.334 27 N -0.349 5.349 28 C 0.109 3.891 29 H 0.254 0.746 30 H 0.378 0.622 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.115 0.885 34 H 0.066 0.934 35 H 0.090 0.910 36 H 0.125 0.875 37 H 0.159 0.841 38 H 0.159 0.841 39 H 0.240 0.760 40 H 0.233 0.767 41 H 0.212 0.788 42 H 0.041 0.959 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.642 -24.072 -4.733 32.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.260 4.260 3 Si 0.796 3.204 4 H -0.217 1.217 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.378 4.378 8 H 0.080 0.920 9 N -0.370 5.370 10 C 0.057 3.943 11 H 0.048 0.952 12 C -0.157 4.157 13 C -0.160 4.160 14 C -0.025 4.025 15 N -0.332 5.332 16 C 0.302 3.698 17 O -0.476 6.476 18 C -0.082 4.082 19 C 0.002 3.998 20 N -0.294 5.294 21 C 0.059 3.941 22 N -0.213 5.213 23 C 0.030 3.970 24 C -0.213 4.213 25 C 0.007 3.993 26 N -0.113 5.113 27 N -0.182 5.182 28 C -0.017 4.017 29 H 0.062 0.938 30 H 0.211 0.789 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.133 0.867 34 H 0.084 0.916 35 H 0.108 0.892 36 H 0.143 0.857 37 H 0.176 0.824 38 H 0.177 0.823 39 H 0.256 0.744 40 H 0.250 0.750 41 H 0.229 0.771 42 H 0.060 0.940 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 20.081 -23.609 -5.054 31.404 hybrid contribution 0.326 1.925 0.347 1.983 sum 20.407 -21.684 -4.708 30.146 Atomic orbital electron populations 1.69787 1.06250 1.26207 1.59007 1.25481 0.96431 1.00766 1.03357 0.85240 0.77803 0.79964 0.77382 1.21737 1.21223 1.19915 1.19488 0.90914 0.85602 1.41777 0.92007 1.42514 1.05549 1.00611 1.88284 1.20585 0.94738 0.86219 0.92712 0.95185 1.21752 0.98499 0.94590 1.00886 1.21892 1.01038 0.96639 0.96414 1.22276 0.98518 0.88356 0.93327 1.48248 1.18493 1.10816 1.55668 1.20772 0.80977 0.90527 0.77541 1.90720 1.63142 1.46487 1.47286 1.20233 0.88088 0.95562 1.04363 1.23952 0.95438 0.92440 0.87939 1.70540 1.12510 1.31085 1.15290 1.22938 0.89804 0.96548 0.84846 1.68116 1.11517 1.20677 1.21036 1.24666 0.86672 0.83671 1.02037 1.22686 1.05481 1.03590 0.89496 1.23160 0.78125 0.93450 1.04584 1.48845 1.08940 1.44287 1.09192 1.78337 0.96641 1.33032 1.10158 1.22118 0.96475 0.83075 1.00013 0.93754 0.78926 0.91407 0.91999 0.86674 0.91558 0.89206 0.85691 0.82380 0.82310 0.74366 0.75025 0.77095 0.94048 0.92311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.03 13.06 21.65 0.28 -59.74 16 2 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 3 Si 0.97 48.62 29.55 68.60 2.03 50.64 16 4 H -0.29 -14.54 7.11 99.48 0.71 -13.83 16 5 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16 6 H -0.27 -13.28 7.11 99.48 0.71 -12.58 16 7 C -0.25 -14.52 9.93 84.03 0.83 -13.69 16 8 H 0.06 3.68 7.83 -2.91 -0.02 3.66 16 9 N -0.73 -38.24 5.12 -323.24 -1.66 -39.90 16 10 C 0.17 6.92 2.91 44.93 0.13 7.05 16 11 H 0.03 1.35 8.08 -2.39 -0.02 1.33 16 12 C -0.12 -3.57 5.36 30.62 0.16 -3.40 16 13 C -0.12 -2.36 6.08 30.67 0.19 -2.17 16 14 C 0.10 1.76 6.34 86.36 0.55 2.30 16 15 N -0.60 -18.47 2.98 -819.72 -2.44 -20.91 16 16 C 0.51 17.56 7.69 87.65 0.67 18.23 16 17 O -0.60 -27.84 15.45 -3.03 -0.05 -27.89 16 18 C -0.04 -0.97 4.67 29.10 0.14 -0.83 16 19 C 0.28 9.02 6.59 138.69 0.91 9.93 16 20 N -0.56 -19.71 11.25 -191.25 -2.15 -21.86 16 21 C 0.42 12.67 8.99 261.60 2.35 15.03 16 22 N -0.50 -11.53 10.48 -197.63 -2.07 -13.60 16 23 C 0.21 1.87 11.27 85.20 0.96 2.83 16 24 C -0.19 -0.77 10.07 22.14 0.22 -0.55 16 25 C 0.14 1.78 11.32 83.48 0.94 2.72 16 26 N -0.33 -8.64 3.91 -197.70 -0.77 -9.42 16 27 N -0.35 -10.89 12.78 -51.45 -0.66 -11.54 16 28 C 0.11 4.44 5.99 86.22 0.52 4.96 16 29 H 0.25 15.26 8.31 -92.70 -0.77 14.49 16 30 H 0.38 20.67 7.80 -92.71 -0.72 19.94 16 31 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.13 1.24 5.93 -2.39 -0.01 1.23 16 37 H 0.16 2.64 7.94 -2.39 -0.02 2.62 16 38 H 0.16 2.48 7.69 -2.39 -0.02 2.46 16 39 H 0.24 -0.56 8.06 -2.91 -0.02 -0.59 16 40 H 0.23 -1.80 8.06 -2.91 -0.02 -1.82 16 41 H 0.21 1.11 8.06 -2.91 -0.02 1.09 16 42 H 0.04 2.07 7.01 -2.39 -0.02 2.05 16 43 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 Total: -1.00 -100.16 362.21 1.89 -98.27 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: 0.33 Total: 17.10 kcal Atomic # 6 Polarization: 29.80 SS G_CDS: 9.05 Total: 38.85 kcal Atomic # 7 Polarization: -167.50 SS G_CDS: -9.47 Total: -176.97 kcal Atomic # 8 Polarization: -27.84 SS G_CDS: -0.05 Total: -27.89 kcal Atomic # 14 Polarization: 48.62 SS G_CDS: 2.03 Total: 50.64 kcal Total: -100.16 1.89 -98.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000910726.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.446 kcal (2) G-P(sol) polarization free energy of solvation -100.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds