Wall clock time and date at job start Tue Mar 31 2020 04:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 119.99863 * 2 1 4 4 H 1.48490 * 109.46788 * 240.00242 * 3 2 1 5 5 H 1.48498 * 109.46669 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47000 * 120.00278 * 3 2 1 7 7 C 1.38812 * 120.00120 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00446 * 163.07527 * 7 2 1 9 9 N 1.36947 * 119.99843 * 343.06584 * 7 2 1 10 10 C 1.46924 * 120.62828 * 331.84315 * 9 7 2 11 11 C 1.53197 * 108.77138 * 233.62763 * 10 9 7 12 12 C 1.53045 * 109.31168 * 305.36863 * 11 10 9 13 13 N 1.46502 * 109.45636 * 181.38839 * 12 11 10 14 14 C 1.34777 * 119.99840 * 154.97559 * 13 12 11 15 15 O 1.21288 * 120.00147 * 359.97438 * 14 13 12 16 16 C 1.50699 * 120.00297 * 179.97438 * 14 13 12 17 17 C 1.50694 * 109.47514 * 179.97438 * 16 14 13 18 18 N 1.32610 * 125.18835 * 90.01643 * 17 16 14 19 19 C 1.32830 * 109.75824 * 179.97438 * 18 17 16 20 20 N 1.33826 * 132.50310 * 180.28905 * 19 18 17 21 21 C 1.31349 * 120.86108 * 180.25239 * 20 19 18 22 22 C 1.40051 * 120.31331 * 359.43562 * 21 20 19 23 23 C 1.35778 * 119.23472 * 0.28035 * 22 21 20 24 24 N 1.35973 * 119.02740 * 0.02562 * 23 22 21 25 25 N 1.31178 * 125.18402 * 269.99661 * 17 16 14 26 26 C 1.53035 * 109.52637 * 61.37048 * 12 11 10 27 27 C 1.46925 * 120.62570 * 151.86257 * 9 7 2 28 28 H 0.97002 * 120.00421 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.58562 * 113.84437 * 10 9 7 30 30 H 1.08991 * 109.70583 * 353.48315 * 10 9 7 31 31 H 1.08997 * 109.49527 * 185.41712 * 11 10 9 32 32 H 1.09000 * 109.52188 * 65.33512 * 11 10 9 33 33 H 1.09002 * 109.45802 * 301.35514 * 12 11 10 34 34 H 0.97000 * 120.00320 * 334.96474 * 13 12 11 35 35 H 1.08997 * 109.47221 * 59.98932 * 16 14 13 36 36 H 1.09001 * 109.46844 * 299.99653 * 16 14 13 37 37 H 1.07996 * 119.84252 * 179.73817 * 21 20 19 38 38 H 1.07996 * 120.37896 * 180.30530 * 22 21 20 39 39 H 1.08005 * 120.48192 * 180.02562 * 23 22 21 40 40 H 1.09002 * 109.49815 * 58.58496 * 26 12 11 41 41 H 1.09006 * 109.49598 * 178.67482 * 26 12 11 42 42 H 1.09000 * 109.58100 * 246.15719 * 27 9 7 43 43 H 1.08992 * 109.58768 * 6.44251 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1038 1.6964 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0552 -1.2223 -0.2728 9 7 1.3701 -2.3626 0.3444 10 6 0.2262 -2.3409 1.2663 11 6 0.4983 -3.3201 2.4126 12 6 0.8134 -4.7016 1.8341 13 7 1.0415 -5.6484 2.9284 14 6 0.8382 -6.9663 2.7326 15 8 0.4659 -7.3683 1.6506 16 6 1.0735 -7.9405 3.8581 17 6 0.7758 -9.3390 3.3825 18 7 1.6562 -10.1614 2.8283 19 6 1.0670 -11.3130 2.5267 20 7 1.5203 -12.4416 1.9683 21 6 0.7191 -13.4626 1.7667 22 6 -0.6272 -13.3903 2.1457 23 6 -1.0947 -12.2513 2.7182 24 7 -0.2413 -11.2098 2.9076 25 7 -0.3938 -9.9288 3.4540 26 6 2.0686 -4.6170 0.9628 27 6 1.8144 -3.6528 -0.2001 28 1 -0.4851 0.8400 0.0004 29 1 -0.6768 -2.6417 0.7352 30 1 0.0965 -1.3358 1.6674 31 1 -0.3822 -3.3856 3.0518 32 1 1.3477 -2.9685 2.9981 33 1 -0.0267 -5.0419 1.2286 34 1 1.3391 -5.3269 3.7939 35 1 0.4191 -7.6944 4.6944 36 1 2.1130 -7.8794 4.1801 37 1 1.1014 -14.3640 1.3108 38 1 -1.2858 -14.2310 1.9849 39 1 -2.1292 -12.1738 3.0186 40 1 2.9034 -4.2530 1.5617 41 1 2.3061 -5.6058 0.5700 42 1 1.0407 -4.0606 -0.8507 43 1 2.7335 -3.5124 -0.7688 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001004139917.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:12 Heat of formation + Delta-G solvation = 126.056202 kcal Electronic energy + Delta-G solvation = -27162.413616 eV Core-core repulsion = 23246.060459 eV Total energy + Delta-G solvation = -3916.353157 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.21904 -39.89646 -39.02280 -37.30564 -34.93371 -34.41327 -32.83396 -32.05679 -31.03497 -30.34031 -29.81879 -28.89691 -25.27433 -24.87760 -24.12547 -22.50557 -22.15663 -21.34857 -20.18459 -19.27208 -18.76615 -18.45056 -17.40726 -16.86867 -16.66337 -16.37141 -15.79452 -15.26779 -14.89392 -14.74414 -14.03403 -13.86408 -13.75993 -13.63557 -13.52629 -13.06930 -12.99851 -12.94650 -12.76875 -12.35543 -12.29741 -12.18095 -11.44197 -11.10672 -10.85050 -10.70061 -10.48593 -10.45958 -10.37816 -10.26847 -10.10531 -10.02902 -9.84805 -9.67734 -9.45023 -9.14994 -8.72173 -8.44250 -6.66875 -5.78108 -3.20326 0.01700 0.34129 1.52882 2.14512 2.71557 2.85426 3.05767 3.36777 3.40328 3.45110 3.46488 3.59858 3.84513 4.11786 4.37812 4.50909 4.58462 4.79034 4.87746 5.04050 5.08218 5.35262 5.39564 5.44046 5.52278 5.61493 5.76547 5.87209 5.89552 5.90581 6.10163 6.28543 6.34577 6.54332 6.59922 6.60639 6.82658 6.91882 7.01962 7.04708 7.32749 7.58942 7.62119 7.69530 7.81018 8.34566 8.46156 9.22214 9.85389 10.42632 11.30854 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.035506 B = 0.002046 C = 0.002024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.416470 B =13684.696627 C =13830.188546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.001 3.999 3 Si 0.903 3.097 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.252 4.252 8 H 0.066 0.934 9 N -0.593 5.593 10 C 0.174 3.826 11 C -0.146 4.146 12 C 0.152 3.848 13 N -0.720 5.720 14 C 0.519 3.481 15 O -0.532 6.532 16 C -0.055 4.055 17 C 0.303 3.697 18 N -0.510 5.510 19 C 0.442 3.558 20 N -0.453 5.453 21 C 0.204 3.796 22 C -0.227 4.227 23 C 0.174 3.826 24 N -0.326 5.326 25 N -0.321 5.321 26 C -0.139 4.139 27 C 0.148 3.852 28 H 0.254 0.746 29 H 0.020 0.980 30 H 0.092 0.908 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.081 0.919 34 H 0.398 0.602 35 H 0.123 0.877 36 H 0.128 0.872 37 H 0.191 0.809 38 H 0.175 0.825 39 H 0.183 0.817 40 H 0.059 0.941 41 H 0.054 0.946 42 H 0.019 0.981 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.550 -27.001 10.709 29.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.733 3.267 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.210 1.210 7 C -0.381 4.381 8 H 0.083 0.917 9 N -0.315 5.315 10 C 0.048 3.952 11 C -0.186 4.186 12 C 0.049 3.951 13 N -0.371 5.371 14 C 0.303 3.697 15 O -0.408 6.408 16 C -0.098 4.098 17 C 0.021 3.979 18 N -0.242 5.242 19 C 0.081 3.919 20 N -0.167 5.167 21 C 0.018 3.982 22 C -0.252 4.252 23 C 0.036 3.964 24 N -0.105 5.105 25 N -0.153 5.153 26 C -0.180 4.180 27 C 0.021 3.979 28 H 0.064 0.936 29 H 0.038 0.962 30 H 0.110 0.890 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.099 0.901 34 H 0.231 0.769 35 H 0.141 0.859 36 H 0.146 0.854 37 H 0.207 0.793 38 H 0.192 0.808 39 H 0.200 0.800 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.037 0.963 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.224 -26.363 10.016 28.289 hybrid contribution -0.384 0.683 0.505 0.932 sum -2.608 -25.680 10.521 27.874 Atomic orbital electron populations 1.70017 1.05249 1.25632 1.53947 1.25060 0.95303 0.98441 1.00918 0.86352 0.78884 0.83296 0.78141 1.20876 1.21665 1.21042 1.19156 0.92572 0.84745 1.41667 0.91674 1.44091 1.35811 1.01670 1.49977 1.20738 0.88905 0.97911 0.87680 1.22542 1.00581 0.94638 1.00847 1.21065 0.98571 0.88128 0.87344 1.46245 1.68706 1.06029 1.16091 1.19969 0.77885 0.83095 0.88764 1.90754 1.45677 1.78138 1.26262 1.20094 1.06269 0.84697 0.98724 1.23516 0.85918 0.96079 0.92352 1.70686 1.30890 0.99281 1.23301 1.22726 0.79704 0.94003 0.95431 1.68014 1.35955 0.97539 1.15214 1.23595 0.89398 0.95660 0.89571 1.21956 0.98704 0.99073 1.05482 1.22178 0.97084 0.83880 0.93234 1.48770 1.11122 1.11685 1.38935 1.78535 1.21407 0.88863 1.26449 1.22374 0.97118 0.99603 0.98866 1.20872 0.97904 0.86510 0.92657 0.93560 0.96163 0.88995 0.92698 0.92057 0.90087 0.76852 0.85861 0.85367 0.79258 0.80792 0.80026 0.92189 0.92692 0.96262 0.92512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.26 11.19 55.49 0.62 -25.64 16 2 C 0.00 0.03 4.92 -17.43 -0.09 -0.05 16 3 Si 0.90 21.70 29.59 -169.99 -5.03 16.67 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.25 -6.95 9.58 -15.05 -0.14 -7.09 16 8 H 0.07 1.77 7.89 -52.49 -0.41 1.35 16 9 N -0.59 -15.02 2.99 -172.33 -0.52 -15.54 16 10 C 0.17 4.12 5.30 -3.71 -0.02 4.10 16 11 C -0.15 -2.67 5.55 -26.61 -0.15 -2.82 16 12 C 0.15 2.69 2.42 -67.89 -0.16 2.53 16 13 N -0.72 -10.01 5.08 -53.76 -0.27 -10.29 16 14 C 0.52 7.86 7.79 -10.99 -0.09 7.77 16 15 O -0.53 -10.68 15.70 5.55 0.09 -10.59 16 16 C -0.06 -0.62 6.33 -29.04 -0.18 -0.81 16 17 C 0.30 4.44 6.59 -157.02 -1.03 3.40 16 18 N -0.51 -8.27 11.25 -11.80 -0.13 -8.41 16 19 C 0.44 6.26 8.99 -323.13 -2.91 3.36 16 20 N -0.45 -5.17 10.48 -13.82 -0.14 -5.31 16 21 C 0.20 1.13 11.27 -17.08 -0.19 0.93 16 22 C -0.23 -0.81 10.07 -39.78 -0.40 -1.21 16 23 C 0.17 1.15 11.32 -16.60 -0.19 0.96 16 24 N -0.33 -3.98 3.91 -13.84 -0.05 -4.04 16 25 N -0.32 -4.60 12.78 32.38 0.41 -4.19 16 26 C -0.14 -2.64 5.65 -26.62 -0.15 -2.79 16 27 C 0.15 3.27 6.52 -3.71 -0.02 3.25 16 28 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 29 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.09 2.40 6.06 -51.93 -0.31 2.09 16 31 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.08 1.64 7.58 -51.93 -0.39 1.24 16 34 H 0.40 4.13 8.60 -40.82 -0.35 3.78 16 35 H 0.12 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.13 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.19 0.17 8.06 -52.49 -0.42 -0.25 16 38 H 0.17 -0.17 8.06 -52.49 -0.42 -0.59 16 39 H 0.18 0.58 8.06 -52.48 -0.42 0.16 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.06 1.23 7.93 -51.93 -0.41 0.82 16 LS Contribution 362.24 15.07 5.46 5.46 Total: -1.00 -39.42 362.24 -10.97 -50.38 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -5.67 Total: -0.06 kcal Atomic # 6 Polarization: 17.27 SS G_CDS: -5.73 Total: 11.54 kcal Atomic # 7 Polarization: -73.32 SS G_CDS: -0.09 Total: -73.41 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.09 Total: -10.59 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.03 Total: 16.67 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -39.42 -10.97 -50.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001004139917.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.438 kcal (2) G-P(sol) polarization free energy of solvation -39.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds