Wall clock time and date at job start Tue Mar 31 2020 04:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86798 * 120.00613 * 2 1 4 4 H 1.48500 * 109.47413 * 240.00402 * 3 2 1 5 5 H 1.48505 * 109.46852 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47473 * 119.99972 * 3 2 1 7 7 C 1.38819 * 119.99507 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99797 * 197.36109 * 7 2 1 9 9 N 1.36933 * 120.00347 * 17.36468 * 7 2 1 10 10 C 1.46920 * 120.63114 * 207.66947 * 9 7 2 11 11 C 1.53198 * 108.77150 * 233.62444 * 10 9 7 12 12 C 1.53039 * 109.31302 * 305.36443 * 11 10 9 13 13 C 1.53033 * 109.53974 * 61.36354 * 12 11 10 14 14 H 1.09006 * 109.52301 * 58.60324 * 13 12 11 15 15 N 1.46498 * 109.50112 * 178.68506 * 13 12 11 16 16 C 1.34773 * 120.00351 * 204.84254 * 15 13 12 17 17 O 1.21277 * 120.00096 * 359.97438 * 16 15 13 18 18 C 1.50698 * 120.00040 * 179.97438 * 16 15 13 19 19 C 1.50704 * 109.47184 * 179.97438 * 18 16 15 20 20 N 1.32611 * 125.18397 * 270.02279 * 19 18 16 21 21 C 1.32824 * 109.75729 * 179.97438 * 20 19 18 22 22 N 1.33825 * 132.50115 * 180.02562 * 21 20 19 23 23 C 1.31346 * 120.86148 * 180.02562 * 22 21 20 24 24 C 1.40045 * 120.31603 * 0.02562 * 23 22 21 25 25 C 1.35783 * 119.24025 * 359.97438 * 24 23 22 26 26 N 1.35987 * 119.01975 * 0.02562 * 25 24 23 27 27 N 1.31178 * 125.18853 * 89.99887 * 19 18 16 28 28 C 1.46922 * 120.62914 * 27.68069 * 9 7 2 29 29 H 0.97006 * 119.99769 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.58957 * 353.40767 * 10 9 7 31 31 H 1.08996 * 109.59266 * 113.84064 * 10 9 7 32 32 H 1.09001 * 109.49486 * 65.31614 * 11 10 9 33 33 H 1.09000 * 109.49377 * 185.37746 * 11 10 9 34 34 H 1.09004 * 109.45579 * 301.34515 * 12 11 10 35 35 H 1.08998 * 109.45807 * 181.39167 * 12 11 10 36 36 H 0.97004 * 119.99622 * 24.83220 * 15 13 12 37 37 H 1.09007 * 109.47243 * 60.00026 * 18 16 15 38 38 H 1.08997 * 109.47218 * 299.99702 * 18 16 15 39 39 H 1.08004 * 119.84508 * 179.97438 * 23 22 21 40 40 H 1.08001 * 120.38432 * 180.27450 * 24 23 22 41 41 H 1.07990 * 120.49123 * 179.97438 * 25 24 23 42 42 H 1.09000 * 109.58946 * 6.58952 * 28 9 7 43 43 H 1.09001 * 109.59235 * 246.16130 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0101 -1.2023 -0.0005 8 1 3.0533 -1.2237 0.2786 9 7 1.3722 -2.3609 -0.3550 10 6 1.8193 -3.6549 0.1784 11 6 2.0749 -4.6090 -0.9926 12 6 0.8194 -4.6883 -1.8642 13 6 0.5013 -3.3027 -2.4307 14 1 1.3496 -2.9439 -3.0136 15 7 -0.6823 -3.3857 -3.2900 16 6 -0.8702 -2.4775 -4.2679 17 8 -0.0597 -1.5912 -4.4362 18 6 -2.0875 -2.5632 -5.1521 19 6 -2.0597 -1.4392 -6.1555 20 7 -2.5919 -0.2384 -5.9727 21 6 -2.3897 0.5112 -7.0504 22 7 -2.7264 1.7708 -7.3518 23 6 -2.4036 2.2954 -8.5119 24 6 -1.6985 1.5404 -9.4574 25 6 -1.3526 0.2613 -9.1605 26 7 -1.7015 -0.2526 -7.9508 27 7 -1.5050 -1.4992 -7.3427 28 6 0.2279 -2.3338 -1.2760 29 1 -0.4850 0.8401 0.0004 30 1 2.7399 -3.5179 0.7457 31 1 1.0469 -4.0699 0.8258 32 1 2.9088 -4.2382 -1.5887 33 1 2.3149 -5.6004 -0.6084 34 1 -0.0197 -5.0356 -1.2614 35 1 0.9902 -5.3856 -2.6844 36 1 -1.3308 -4.0945 -3.1552 37 1 -2.9867 -2.4824 -4.5413 38 1 -2.0891 -3.5188 -5.6765 39 1 -2.6840 3.3135 -8.7381 40 1 -1.4287 1.9720 -10.4100 41 1 -0.8091 -0.3392 -9.8748 42 1 0.0984 -1.3252 -1.6684 43 1 -0.6743 -2.6410 -0.7472 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001009538210.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:30 Heat of formation + Delta-G solvation = 128.747514 kcal Electronic energy + Delta-G solvation = -27855.538238 eV Core-core repulsion = 23939.301785 eV Total energy + Delta-G solvation = -3916.236453 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.03634 -39.64300 -38.82794 -37.23191 -34.75662 -34.07805 -32.71928 -32.44450 -30.86054 -30.15893 -29.78206 -28.22057 -25.20850 -24.93452 -24.02369 -22.51140 -22.05785 -21.16025 -19.94580 -19.23776 -18.59358 -18.27482 -17.12462 -16.72486 -16.53072 -16.29871 -15.58860 -15.07584 -14.83600 -14.48832 -13.99784 -13.74766 -13.62717 -13.57779 -13.40608 -13.01039 -12.82686 -12.79633 -12.41520 -12.27767 -12.13990 -12.02615 -11.82484 -10.96418 -10.70775 -10.65334 -10.44344 -10.27326 -10.21704 -10.17990 -9.98295 -9.88455 -9.85969 -9.48140 -9.32686 -8.97086 -8.51544 -8.35936 -6.59777 -5.68788 -3.12100 0.18634 0.51096 1.70215 2.33183 3.00403 3.04529 3.25248 3.47131 3.54724 3.55938 3.58122 3.77580 3.99394 4.30466 4.53583 4.60040 4.74548 4.97502 5.06661 5.20472 5.29340 5.39892 5.45462 5.56706 5.59032 5.67985 5.73236 5.94899 6.05332 6.08785 6.12063 6.17929 6.37469 6.45282 6.53721 6.73792 6.80970 6.96502 7.00298 7.22741 7.35492 7.79383 7.81902 7.87883 7.94226 8.54538 8.64498 9.29557 9.93704 10.48226 11.39190 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.012254 B = 0.003427 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.464834 B = 8168.420068 C = 9823.425610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.009 3.991 3 Si 0.901 3.099 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.260 4.260 8 H 0.065 0.935 9 N -0.588 5.588 10 C 0.142 3.858 11 C -0.131 4.131 12 C -0.115 4.115 13 C 0.118 3.882 14 H 0.081 0.919 15 N -0.718 5.718 16 C 0.519 3.481 17 O -0.522 6.522 18 C -0.054 4.054 19 C 0.305 3.695 20 N -0.505 5.505 21 C 0.442 3.558 22 N -0.451 5.451 23 C 0.202 3.798 24 C -0.228 4.228 25 C 0.173 3.827 26 N -0.327 5.327 27 N -0.324 5.324 28 C 0.166 3.834 29 H 0.255 0.745 30 H 0.055 0.945 31 H 0.018 0.982 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.060 0.940 35 H 0.050 0.950 36 H 0.394 0.606 37 H 0.128 0.872 38 H 0.121 0.879 39 H 0.190 0.810 40 H 0.174 0.826 41 H 0.181 0.819 42 H 0.095 0.905 43 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.318 -4.837 -20.380 21.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.191 4.191 3 Si 0.730 3.270 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.390 4.390 8 H 0.083 0.917 9 N -0.311 5.311 10 C 0.016 3.984 11 C -0.171 4.171 12 C -0.153 4.153 13 C 0.013 3.987 14 H 0.099 0.901 15 N -0.369 5.369 16 C 0.302 3.698 17 O -0.397 6.397 18 C -0.097 4.097 19 C 0.023 3.977 20 N -0.236 5.236 21 C 0.081 3.919 22 N -0.165 5.165 23 C 0.016 3.984 24 C -0.253 4.253 25 C 0.035 3.965 26 N -0.106 5.106 27 N -0.155 5.155 28 C 0.039 3.961 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.036 0.964 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.227 0.773 37 H 0.146 0.854 38 H 0.139 0.861 39 H 0.207 0.793 40 H 0.191 0.809 41 H 0.198 0.802 42 H 0.113 0.887 43 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -6.128 -4.353 -19.511 20.909 hybrid contribution 0.542 0.366 -0.777 1.015 sum -5.586 -3.987 -20.288 21.417 Atomic orbital electron populations 1.69986 1.05307 1.25759 1.52948 1.25016 0.95242 0.98421 1.00406 0.86399 0.79020 0.83546 0.77990 1.21010 1.21558 1.20872 1.19082 0.92690 0.84896 1.42300 0.91706 1.43949 1.36064 1.01588 1.49510 1.20953 0.97703 0.86892 0.92854 1.22009 0.96982 0.99328 0.98797 1.21669 0.98941 0.95967 0.98750 1.21987 0.86887 0.96933 0.92925 0.90119 1.45957 1.26574 1.30779 1.33557 1.19879 0.86619 0.82310 0.81030 1.90792 1.45286 1.33466 1.70177 1.20090 1.00650 0.94630 0.94311 1.23534 0.90289 0.92617 0.91211 1.70725 1.28984 1.02926 1.20959 1.22738 0.92099 0.90141 0.86904 1.68009 1.22000 1.06210 1.20231 1.23574 0.88460 1.00243 0.86172 1.21930 1.05676 0.93530 1.04192 1.22142 0.94385 0.94779 0.85182 1.48788 1.36463 1.12113 1.13215 1.78491 1.29199 0.96657 1.11191 1.21097 0.88723 0.99034 0.87200 0.93504 0.92667 0.96394 0.92191 0.92628 0.92160 0.93093 0.77280 0.85359 0.86103 0.79344 0.80910 0.80153 0.88726 0.96403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.81 11.19 55.49 0.62 -27.19 16 2 C 0.01 0.26 4.91 -17.43 -0.09 0.17 16 3 Si 0.90 23.48 29.59 -169.99 -5.03 18.45 16 4 H -0.28 -7.45 7.11 56.52 0.40 -7.05 16 5 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 6 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 7 C -0.26 -7.56 9.58 -15.06 -0.14 -7.70 16 8 H 0.07 1.83 7.89 -52.48 -0.41 1.42 16 9 N -0.59 -15.42 2.99 -172.32 -0.52 -15.93 16 10 C 0.14 3.02 6.52 -3.71 -0.02 3.00 16 11 C -0.13 -2.27 6.08 -26.61 -0.16 -2.43 16 12 C -0.12 -1.87 5.35 -26.69 -0.14 -2.01 16 13 C 0.12 2.35 2.60 -67.81 -0.18 2.18 16 14 H 0.08 1.86 7.58 -51.93 -0.39 1.47 16 15 N -0.72 -11.73 5.08 -53.69 -0.27 -12.01 16 16 C 0.52 9.47 7.79 -10.99 -0.09 9.39 16 17 O -0.52 -12.57 15.70 5.56 0.09 -12.48 16 18 C -0.05 -0.74 6.33 -29.03 -0.18 -0.93 16 19 C 0.30 5.24 6.59 -157.01 -1.03 4.20 16 20 N -0.50 -9.70 11.25 -11.80 -0.13 -9.84 16 21 C 0.44 7.41 8.99 -323.14 -2.91 4.51 16 22 N -0.45 -6.29 10.48 -13.82 -0.14 -6.44 16 23 C 0.20 1.56 11.27 -17.08 -0.19 1.37 16 24 C -0.23 -1.25 10.07 -39.78 -0.40 -1.65 16 25 C 0.17 1.46 11.32 -16.59 -0.19 1.27 16 26 N -0.33 -4.68 3.91 -13.84 -0.05 -4.74 16 27 N -0.32 -5.29 12.78 32.39 0.41 -4.88 16 28 C 0.17 4.19 4.89 -3.71 -0.02 4.17 16 29 H 0.25 7.75 8.31 -40.82 -0.34 7.41 16 30 H 0.05 1.15 7.93 -51.93 -0.41 0.74 16 31 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.39 4.73 8.60 -40.82 -0.35 4.37 16 37 H 0.13 1.47 8.14 -51.93 -0.42 1.05 16 38 H 0.12 1.16 8.14 -51.93 -0.42 0.73 16 39 H 0.19 0.57 8.06 -52.48 -0.42 0.15 16 40 H 0.17 0.13 8.06 -52.49 -0.42 -0.29 16 41 H 0.18 0.86 8.06 -52.49 -0.42 0.44 16 42 H 0.09 2.85 6.03 -51.93 -0.31 2.53 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 362.22 15.07 5.46 5.46 Total: -1.00 -42.17 362.22 -10.98 -53.16 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -5.67 Total: 0.89 kcal Atomic # 6 Polarization: 21.29 SS G_CDS: -5.74 Total: 15.54 kcal Atomic # 7 Polarization: -80.93 SS G_CDS: -0.09 Total: -81.01 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: 0.09 Total: -12.48 kcal Atomic # 14 Polarization: 23.48 SS G_CDS: -5.03 Total: 18.45 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -42.17 -10.98 -53.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009538210.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.904 kcal (2) G-P(sol) polarization free energy of solvation -42.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds