Wall clock time and date at job start Tue Mar 31 2020 05:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34819 * 125.88765 * 2 1 4 4 C 1.36482 * 107.60057 * 179.90088 * 3 2 1 5 5 C 1.48382 * 126.23138 * 180.14043 * 4 3 2 6 6 N 1.31328 * 126.50838 * 325.26699 * 5 4 3 7 7 N 1.39768 * 109.09331 * 179.97438 * 6 5 4 8 8 H 0.97005 * 125.16127 * 179.97438 * 7 6 5 9 9 C 1.34105 * 109.68349 * 0.02562 * 7 6 5 10 10 C 1.38037 * 107.87344 * 359.71785 * 9 7 6 11 11 C 1.47240 * 126.81695 * 180.29678 * 10 9 7 12 12 O 1.21616 * 120.00223 * 180.15748 * 11 10 9 13 13 N 1.34784 * 119.99682 * 0.16001 * 11 10 9 14 14 C 1.46498 * 119.99697 * 180.02562 * 13 11 10 15 15 H 1.08999 * 112.85300 * 23.80357 * 14 13 11 16 16 C 1.53784 * 113.61070 * 154.99911 * 14 13 11 17 17 C 1.53782 * 87.08038 * 139.98085 * 16 14 13 18 18 H 1.08997 * 113.61439 * 89.19834 * 17 16 14 19 19 N 1.46497 * 113.61466 * 220.01954 * 17 16 14 20 20 C 1.36937 * 119.99972 * 205.00257 * 19 17 16 21 21 H 1.08005 * 120.00162 * 359.97438 * 20 19 17 22 22 C 1.38818 * 120.00123 * 179.97438 * 20 19 17 23 23 N 1.31621 * 119.99588 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00090 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47120 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.46826 * 119.99864 * 24 22 20 27 27 H 1.48497 * 109.47033 * 240.00044 * 24 22 20 28 28 C 1.53783 * 87.08178 * 334.56498 * 17 16 14 29 29 C 1.40890 * 107.54165 * 0.36713 * 4 3 2 30 30 N 1.30664 * 108.08922 * 359.77448 * 29 4 3 31 31 H 1.09001 * 109.47060 * 269.71520 * 1 2 3 32 32 H 1.09004 * 109.47073 * 29.71009 * 1 2 3 33 33 H 1.09000 * 109.47212 * 149.71091 * 1 2 3 34 34 H 1.08000 * 126.20088 * 0.03971 * 3 2 1 35 35 H 1.08003 * 126.06076 * 180.02562 * 9 7 6 36 36 H 0.96997 * 120.00082 * 359.97438 * 13 11 10 37 37 H 1.09008 * 113.61376 * 254.52470 * 16 14 13 38 38 H 1.08991 * 113.61700 * 25.43278 * 16 14 13 39 39 H 0.97002 * 120.00016 * 24.99313 * 19 17 16 40 40 H 0.96997 * 119.99626 * 179.97438 * 23 22 20 41 41 H 1.08998 * 113.61380 * 270.88812 * 28 17 16 42 42 H 1.08993 * 113.61427 * 139.98022 * 28 17 16 43 43 H 1.07998 * 125.95530 * 179.77320 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2554 1.0923 0.0000 4 6 3.5513 0.6640 0.0023 5 6 4.7595 1.5253 0.0060 6 7 4.8935 2.6860 -0.5936 7 7 6.1783 3.1801 -0.3513 8 1 6.5252 4.0221 -0.6855 9 6 6.8592 2.3131 0.4123 10 6 6.0281 1.2451 0.6847 11 6 6.3525 0.0586 1.4940 12 8 5.5217 -0.8153 1.6521 13 7 7.5702 -0.0588 2.0597 14 6 7.8932 -1.2395 2.8645 15 1 7.2807 -2.1049 2.6113 16 6 9.3984 -1.5479 2.9293 17 6 9.1836 -1.8941 4.4122 18 1 8.9252 -2.9390 4.5836 19 7 10.2607 -1.4236 5.2866 20 6 10.4978 -2.0522 6.4799 21 1 9.8904 -2.8945 6.7766 22 6 11.5188 -1.6067 7.3083 23 7 12.2593 -0.5805 6.9464 24 14 11.8416 -2.4637 8.9364 25 1 10.8783 -3.5808 9.1073 26 1 13.2267 -2.9990 8.9477 27 1 11.6770 -1.4929 10.0479 28 6 7.9666 -0.9548 4.3740 29 6 3.5329 -0.7448 -0.0050 30 7 2.2857 -1.1343 -0.0063 31 1 -0.3633 -0.0051 1.0277 32 1 -0.3633 0.8926 -0.5093 33 1 -0.3634 -0.8874 -0.5183 34 1 1.9232 2.1199 0.0006 35 1 7.8756 2.4320 0.7575 36 1 8.2329 0.6381 1.9333 37 1 9.6958 -2.4017 2.3203 38 1 10.0303 -0.6739 2.7721 39 1 10.8061 -0.6670 5.0203 40 1 12.9724 -0.2690 7.5254 41 1 8.2071 0.0814 4.6117 42 1 7.1081 -1.3297 4.9312 43 1 4.3988 -1.3902 -0.0087 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022960026.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:22 Heat of formation + Delta-G solvation = 154.008253 kcal Electronic energy + Delta-G solvation = -26835.524297 eV Core-core repulsion = 22920.383232 eV Total energy + Delta-G solvation = -3915.141065 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.51480 -40.83296 -39.41647 -37.66659 -34.10894 -33.66039 -32.73181 -32.27635 -30.53558 -29.64645 -29.56730 -26.97741 -25.07228 -24.72437 -23.41270 -22.72982 -21.81076 -21.05907 -19.94141 -19.71200 -19.28539 -18.37686 -17.09852 -16.92512 -16.41881 -15.89494 -15.63761 -15.18239 -14.86810 -14.59611 -14.43931 -14.32981 -14.06619 -13.87474 -13.18856 -13.08004 -12.99559 -12.93738 -12.69664 -12.52759 -12.05121 -11.87605 -11.25279 -11.18697 -10.92105 -10.88918 -10.59263 -10.45496 -10.28579 -10.21517 -10.01193 -9.74170 -9.58315 -9.40382 -9.05507 -8.89364 -8.62623 -8.25887 -6.97049 -5.79998 -3.08231 1.34428 1.42703 2.06472 2.30184 2.52009 3.01511 3.42464 3.42939 3.49268 3.50964 3.56126 4.17624 4.40432 4.46159 4.59212 4.66371 4.86406 4.96948 5.05253 5.11543 5.18597 5.27396 5.29254 5.34631 5.44611 5.50255 5.54395 5.86023 5.90264 5.99598 6.15066 6.22218 6.28931 6.35670 6.56027 6.62919 6.67485 6.78444 6.82313 6.86215 7.11855 7.30356 7.63469 7.70447 7.78258 8.38841 8.48756 9.50317 10.07445 10.41865 11.42576 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.018389 B = 0.002245 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.291427 B =12467.664928 C =13447.550402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.379 5.379 3 C 0.088 3.912 4 C -0.176 4.176 5 C 0.219 3.781 6 N -0.299 5.299 7 N -0.467 5.467 8 H 0.442 0.558 9 C 0.107 3.893 10 C -0.280 4.280 11 C 0.591 3.409 12 O -0.540 6.540 13 N -0.713 5.713 14 C 0.122 3.878 15 H 0.111 0.889 16 C -0.159 4.159 17 C 0.168 3.832 18 H 0.080 0.920 19 N -0.711 5.711 20 C -0.241 4.241 21 H 0.073 0.927 22 C -0.014 4.014 23 N -0.934 5.934 24 Si 0.907 3.093 25 H -0.279 1.279 26 H -0.292 1.292 27 H -0.292 1.292 28 C -0.176 4.176 29 C 0.118 3.882 30 N -0.306 5.306 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.176 0.824 35 H 0.188 0.812 36 H 0.394 0.606 37 H 0.066 0.934 38 H 0.080 0.920 39 H 0.385 0.615 40 H 0.255 0.745 41 H 0.078 0.922 42 H 0.058 0.942 43 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.821 8.651 -19.038 27.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.159 5.159 3 C -0.061 4.061 4 C -0.190 4.190 5 C 0.050 3.950 6 N -0.120 5.120 7 N -0.172 5.172 8 H 0.287 0.713 9 C -0.043 4.043 10 C -0.296 4.296 11 C 0.379 3.621 12 O -0.418 6.418 13 N -0.362 5.362 14 C 0.017 3.983 15 H 0.129 0.871 16 C -0.199 4.199 17 C 0.055 3.945 18 H 0.098 0.902 19 N -0.349 5.349 20 C -0.372 4.372 21 H 0.091 0.909 22 C -0.210 4.210 23 N -0.582 5.582 24 Si 0.738 3.262 25 H -0.205 1.205 26 H -0.219 1.219 27 H -0.219 1.219 28 C -0.218 4.218 29 C -0.070 4.070 30 N -0.126 5.126 31 H 0.093 0.907 32 H 0.104 0.896 33 H 0.108 0.892 34 H 0.193 0.807 35 H 0.204 0.796 36 H 0.228 0.772 37 H 0.085 0.915 38 H 0.099 0.901 39 H 0.219 0.781 40 H 0.064 0.936 41 H 0.097 0.903 42 H 0.077 0.923 43 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -19.913 7.753 -19.457 28.900 hybrid contribution 2.019 1.095 1.237 2.609 sum -17.894 8.848 -18.220 27.026 Atomic orbital electron populations 1.21855 0.74121 1.04414 1.03487 1.48389 1.06756 1.03907 1.56820 1.22475 0.90417 0.93388 0.99852 1.17613 0.89064 0.92368 1.19995 1.20865 0.91599 0.90477 0.92082 1.77314 0.97226 1.12921 1.24563 1.45877 1.10263 1.19710 1.41305 0.71331 1.23060 0.98283 0.90028 0.92968 1.21378 0.95494 0.99817 1.12897 1.17152 0.81979 0.84759 0.78212 1.90728 1.47466 1.41763 1.61858 1.45881 1.14304 1.23613 1.52415 1.22458 0.96451 0.88285 0.91081 0.87116 1.23861 0.94352 1.01626 1.00035 1.21368 0.88700 0.96249 0.88183 0.90242 1.42362 1.35892 1.37252 1.19353 1.19374 1.12286 1.10554 0.95011 0.90925 1.24764 0.98589 0.98551 0.99124 1.69666 1.22959 1.27547 1.38025 0.86108 0.77642 0.78664 0.83749 1.20466 1.21877 1.21885 1.24319 1.01251 1.02226 0.94013 1.24221 0.94893 0.93554 0.94315 1.77374 1.01733 1.07494 1.25970 0.90671 0.89560 0.89183 0.80661 0.79563 0.77200 0.91520 0.90105 0.78148 0.93562 0.90331 0.92283 0.78709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.60 11.46 59.85 0.69 1.28 16 2 N -0.38 -4.09 4.00 -67.88 -0.27 -4.36 16 3 C 0.09 0.94 11.45 -16.87 -0.19 0.75 16 4 C -0.18 -2.30 5.82 -105.35 -0.61 -2.91 16 5 C 0.22 2.76 7.27 -80.55 -0.59 2.17 16 6 N -0.30 -3.32 12.65 34.58 0.44 -2.88 16 7 N -0.47 -3.53 7.20 30.82 0.22 -3.31 16 8 H 0.44 1.70 8.96 -182.84 -1.64 0.06 16 9 C 0.11 0.84 11.50 -16.63 -0.19 0.65 16 10 C -0.28 -3.29 6.31 -102.95 -0.65 -3.94 16 11 C 0.59 8.16 7.81 -12.60 -0.10 8.06 16 12 O -0.54 -9.04 12.54 5.26 0.07 -8.98 16 13 N -0.71 -8.81 5.35 -54.15 -0.29 -9.10 16 14 C 0.12 1.78 4.24 -67.11 -0.28 1.49 16 15 H 0.11 1.69 7.46 -51.93 -0.39 1.31 16 16 C -0.16 -2.41 7.58 -25.92 -0.20 -2.61 16 17 C 0.17 3.21 4.48 -67.12 -0.30 2.91 16 18 H 0.08 1.53 8.10 -51.93 -0.42 1.11 16 19 N -0.71 -17.30 5.40 -52.63 -0.28 -17.58 16 20 C -0.24 -6.60 9.97 -15.06 -0.15 -6.75 16 21 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 22 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 23 N -0.93 -27.71 13.06 55.49 0.72 -26.98 16 24 Si 0.91 22.23 29.55 -169.99 -5.02 17.20 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 27 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 28 C -0.18 -3.04 7.68 -25.92 -0.20 -3.24 16 29 C 0.12 1.67 10.13 -17.05 -0.17 1.50 16 30 N -0.31 -4.28 12.54 30.81 0.39 -3.89 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.18 1.31 8.06 -52.49 -0.42 0.89 16 35 H 0.19 0.72 7.48 -52.48 -0.39 0.32 16 36 H 0.39 3.80 7.68 -40.82 -0.31 3.48 16 37 H 0.07 0.95 8.14 -51.92 -0.42 0.53 16 38 H 0.08 1.19 8.09 -51.93 -0.42 0.77 16 39 H 0.38 9.82 7.92 -40.82 -0.32 9.50 16 40 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 41 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 42 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.20 2.81 6.38 -52.49 -0.33 2.47 16 LS Contribution 369.94 15.07 5.57 5.57 Total: -1.00 -36.62 369.94 -8.24 -44.86 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: -6.74 Total: 10.60 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: -3.05 Total: -1.15 kcal Atomic # 7 Polarization: -69.04 SS G_CDS: 0.92 Total: -68.12 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: 0.07 Total: -8.98 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -36.62 -8.24 -44.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022960026.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 198.865 kcal (2) G-P(sol) polarization free energy of solvation -36.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 162.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 154.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds