Wall clock time and date at job start Tue Mar 31 2020 04:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86805 * 120.00233 * 2 1 4 4 H 1.48495 * 109.46952 * 239.99958 * 3 2 1 5 5 H 1.48501 * 109.47009 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.47034 * 119.99947 * 3 2 1 7 7 C 1.38813 * 119.99860 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00220 * 197.36151 * 7 2 1 9 9 N 1.36937 * 119.99973 * 17.35120 * 7 2 1 10 10 C 1.46919 * 120.63056 * 27.69196 * 9 7 2 11 11 C 1.53195 * 108.77859 * 126.38296 * 10 9 7 12 12 C 1.53042 * 109.30845 * 54.63605 * 11 10 9 13 13 C 1.53038 * 109.54027 * 298.63558 * 12 11 10 14 14 H 1.09007 * 109.49334 * 301.37985 * 13 12 11 15 15 C 1.53000 * 109.49949 * 181.31970 * 13 12 11 16 16 N 1.46504 * 109.47018 * 175.06098 * 15 13 12 17 17 C 1.34772 * 119.99931 * 179.97438 * 16 15 13 18 18 O 1.21551 * 120.00222 * 0.02562 * 17 16 15 19 19 C 1.47870 * 120.00174 * 180.02562 * 17 16 15 20 20 C 1.39456 * 121.11250 * 0.02562 * 19 17 16 21 21 C 1.38618 * 119.37363 * 180.02562 * 20 19 17 22 22 N 1.31582 * 121.63802 * 359.97438 * 21 20 19 23 23 C 1.32213 * 121.86828 * 0.02562 * 22 21 20 24 24 N 1.37214 * 134.67326 * 180.02562 * 23 22 21 25 25 H 0.97001 * 125.86672 * 359.97438 * 24 23 22 26 26 N 1.28777 * 108.25618 * 180.24606 * 24 23 22 27 27 N 1.28691 * 111.76220 * 359.55214 * 26 24 23 28 28 C 1.34397 * 109.15257 * 0.45455 * 27 26 24 29 29 C 1.46936 * 120.60583 * 207.66295 * 9 7 2 30 30 H 0.96998 * 119.99744 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.58877 * 6.60044 * 10 9 7 32 32 H 1.09002 * 109.70441 * 246.24041 * 10 9 7 33 33 H 1.08993 * 109.49998 * 294.68466 * 11 10 9 34 34 H 1.08998 * 109.50172 * 174.58391 * 11 10 9 35 35 H 1.09004 * 109.45872 * 178.61615 * 12 11 10 36 36 H 1.09001 * 109.44896 * 58.64916 * 12 11 10 37 37 H 1.08994 * 109.47033 * 55.06695 * 15 13 12 38 38 H 1.08996 * 109.46585 * 295.06008 * 15 13 12 39 39 H 0.96995 * 119.99843 * 0.02562 * 16 15 13 40 40 H 1.07994 * 120.31552 * 0.02562 * 20 19 17 41 41 H 1.07998 * 119.18042 * 180.02562 * 21 20 19 42 42 H 1.08994 * 109.55971 * 113.81160 * 29 9 7 43 43 H 1.08999 * 109.61508 * 353.38266 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7465 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0534 -1.2237 0.2785 9 7 1.3723 -2.3609 -0.3547 10 6 0.2279 -2.3340 -1.2757 11 6 0.5011 -3.3033 -2.4302 12 6 0.8190 -4.6887 -1.8631 13 6 2.0746 -4.6094 -0.9917 14 1 2.9086 -4.2395 -1.5882 15 6 2.4105 -6.0011 -0.4520 16 7 3.6760 -5.9470 0.2840 17 6 4.1732 -7.0633 0.8524 18 8 3.5718 -8.1151 0.7540 19 6 5.4503 -7.0087 1.5958 20 6 6.1591 -5.8146 1.7237 21 6 7.3530 -5.8047 2.4281 22 7 7.8368 -6.8959 2.9818 23 6 7.2122 -8.0580 2.8960 24 7 7.4653 -9.3255 3.3566 25 1 8.2358 -9.5969 3.8797 26 7 6.5069 -10.0940 2.9702 27 7 5.6216 -9.4496 2.2941 28 6 5.9920 -8.1612 2.1979 29 6 1.8201 -3.6546 0.1789 30 1 -0.4850 0.8401 -0.0004 31 1 0.0986 -1.3254 -1.6684 32 1 -0.6757 -2.6394 -0.7482 33 1 1.3497 -2.9451 -3.0129 34 1 -0.3796 -3.3652 -3.0694 35 1 0.9897 -5.3863 -2.6832 36 1 -0.0202 -5.0355 -1.2601 37 1 2.5031 -6.7004 -1.2829 38 1 1.6156 -6.3333 0.2158 39 1 4.1557 -5.1077 0.3629 40 1 5.7816 -4.9062 1.2782 41 1 7.8992 -4.8781 2.5255 42 1 1.0479 -4.0690 0.8271 43 1 2.7411 -3.5177 0.7456 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023483509.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:44 Heat of formation + Delta-G solvation = 112.333825 kcal Electronic energy + Delta-G solvation = -27582.297668 eV Core-core repulsion = 23665.349465 eV Total energy + Delta-G solvation = -3916.948204 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.74476 -40.19334 -38.97417 -37.80570 -34.96617 -34.51924 -33.19837 -32.28598 -31.17095 -30.49782 -30.27431 -26.44517 -25.37759 -25.06346 -24.24299 -23.26974 -22.17550 -21.29169 -20.89654 -19.44568 -18.94551 -18.75166 -17.72625 -16.95492 -16.74782 -16.03880 -15.67256 -15.37977 -15.08406 -14.85397 -14.29393 -14.05338 -13.78298 -13.55759 -13.48327 -13.22342 -12.83079 -12.65548 -12.39998 -12.34630 -12.21542 -12.00176 -11.80547 -11.34438 -11.05794 -10.75093 -10.56010 -10.49872 -10.28826 -10.21419 -9.98256 -9.84436 -9.68215 -9.60185 -9.47998 -9.45635 -9.02024 -8.50815 -6.73051 -5.83836 -3.26819 -0.31506 0.48189 1.77443 1.85694 2.60686 2.87996 3.33295 3.34995 3.40114 3.40566 3.41549 3.86113 4.06054 4.17540 4.39071 4.43476 4.77585 4.99594 5.09339 5.12678 5.24932 5.33282 5.39045 5.41598 5.57426 5.77568 5.79064 5.89782 5.95179 6.18220 6.21217 6.26343 6.32955 6.38449 6.54109 6.65770 6.71994 6.81817 6.90956 7.08223 7.35765 7.39824 7.63206 7.72898 7.81933 8.08212 8.39154 9.15402 9.79159 10.35874 11.24377 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.015914 B = 0.002802 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.064052 B = 9991.539563 C =11463.400814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.004 3.996 3 Si 0.902 3.098 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.256 4.256 8 H 0.065 0.935 9 N -0.591 5.591 10 C 0.168 3.832 11 C -0.142 4.142 12 C -0.100 4.100 13 C -0.118 4.118 14 H 0.074 0.926 15 C 0.127 3.873 16 N -0.713 5.713 17 C 0.548 3.452 18 O -0.505 6.505 19 C -0.006 4.006 20 C -0.139 4.139 21 C 0.165 3.835 22 N -0.460 5.460 23 C 0.214 3.786 24 N -0.406 5.406 25 H 0.457 0.543 26 N 0.000 5.000 27 N -0.209 5.209 28 C 0.002 3.998 29 C 0.153 3.847 30 H 0.255 0.745 31 H 0.086 0.914 32 H 0.018 0.982 33 H 0.054 0.946 34 H 0.050 0.950 35 H 0.048 0.952 36 H 0.057 0.943 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.402 0.598 40 H 0.162 0.838 41 H 0.185 0.815 42 H 0.020 0.980 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.448 -12.313 2.638 19.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.195 4.195 3 Si 0.732 3.268 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.209 1.209 7 C -0.386 4.386 8 H 0.083 0.917 9 N -0.313 5.313 10 C 0.043 3.957 11 C -0.181 4.181 12 C -0.138 4.138 13 C -0.139 4.139 14 H 0.093 0.907 15 C 0.004 3.996 16 N -0.366 5.366 17 C 0.332 3.668 18 O -0.379 6.379 19 C -0.023 4.023 20 C -0.163 4.163 21 C -0.008 4.008 22 N -0.174 5.174 23 C -0.030 4.030 24 N -0.137 5.137 25 H 0.306 0.694 26 N 0.017 4.983 27 N -0.085 5.085 28 C -0.127 4.127 29 C 0.027 3.973 30 H 0.065 0.935 31 H 0.105 0.895 32 H 0.036 0.964 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.238 0.762 40 H 0.180 0.820 41 H 0.202 0.798 42 H 0.037 0.963 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 13.993 -14.412 3.022 20.313 hybrid contribution 0.883 2.143 0.034 2.318 sum 14.876 -12.269 3.055 19.523 Atomic orbital electron populations 1.70031 1.05300 1.25686 1.53459 1.25041 0.95257 0.98430 1.00816 0.86384 0.78943 0.83418 0.78083 1.21017 1.21661 1.20881 1.19103 0.92605 0.84898 1.41969 0.91742 1.44026 1.35870 1.01132 1.50305 1.20800 0.88525 0.98450 0.87952 1.22169 1.00135 0.95898 0.99874 1.21340 0.96672 0.97798 0.97985 1.21975 0.98999 0.93399 0.99521 0.90739 1.21553 0.84201 0.98310 0.95552 1.45964 1.25133 1.10941 1.54538 1.17859 0.84341 0.84596 0.79965 1.90873 1.59328 1.29239 1.58481 1.19733 0.95449 0.90726 0.96353 1.22517 0.96024 0.97996 0.99733 1.22899 0.92515 0.95036 0.90322 1.66338 1.33914 0.96450 1.20717 1.19877 0.94362 0.88692 1.00054 1.44701 1.22148 1.04212 1.42610 0.69447 1.78262 0.93311 1.18475 1.08214 1.75587 1.17630 1.02567 1.12673 1.20124 0.95550 0.93972 1.03054 1.20904 0.97468 0.86902 0.92067 0.93524 0.89544 0.96432 0.92736 0.93154 0.93352 0.92399 0.91522 0.91132 0.76154 0.82038 0.79798 0.96263 0.93209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.30 11.19 55.49 0.62 -24.67 16 2 C 0.00 0.09 4.91 -17.43 -0.09 0.01 16 3 Si 0.90 20.64 29.59 -169.99 -5.03 15.61 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.26 -6.57 9.58 -15.06 -0.14 -6.72 16 8 H 0.06 1.58 7.89 -52.49 -0.41 1.17 16 9 N -0.59 -13.78 3.00 -172.32 -0.52 -14.30 16 10 C 0.17 3.83 5.31 -3.71 -0.02 3.81 16 11 C -0.14 -2.54 6.08 -26.61 -0.16 -2.70 16 12 C -0.10 -1.55 5.17 -26.69 -0.14 -1.69 16 13 C -0.12 -1.79 2.37 -90.50 -0.21 -2.00 16 14 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 15 C 0.13 1.72 5.07 -4.04 -0.02 1.70 16 16 N -0.71 -8.68 5.29 -61.24 -0.32 -9.00 16 17 C 0.55 7.67 7.79 -12.32 -0.10 7.57 16 18 O -0.50 -9.03 16.27 5.32 0.09 -8.95 16 19 C -0.01 -0.07 5.92 -104.51 -0.62 -0.69 16 20 C -0.14 -1.09 9.61 -38.99 -0.37 -1.46 16 21 C 0.16 1.14 11.14 -17.52 -0.20 0.95 16 22 N -0.46 -4.27 10.35 -12.38 -0.13 -4.40 16 23 C 0.21 2.30 8.56 -156.20 -1.34 0.96 16 24 N -0.41 -3.61 7.06 31.11 0.22 -3.39 16 25 H 0.46 2.06 8.96 -190.25 -1.71 0.36 16 26 N 0.00 0.00 13.29 60.35 0.80 0.81 16 27 N -0.21 -3.11 11.92 32.23 0.38 -2.72 16 28 C 0.00 0.03 6.97 -84.72 -0.59 -0.56 16 29 C 0.15 2.87 5.60 -3.71 -0.02 2.85 16 30 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 31 H 0.09 2.22 6.04 -51.93 -0.31 1.91 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.40 4.00 5.84 -40.82 -0.24 3.76 16 40 H 0.16 0.82 6.53 -52.49 -0.34 0.48 16 41 H 0.19 0.56 8.06 -52.49 -0.42 0.14 16 42 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.05 0.86 7.14 -51.93 -0.37 0.49 16 LS Contribution 355.41 15.07 5.36 5.36 Total: -1.00 -34.33 355.41 -9.29 -43.63 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -6.75 Total: 0.01 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: -4.02 Total: 2.02 kcal Atomic # 7 Polarization: -58.74 SS G_CDS: 1.06 Total: -57.68 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: 0.09 Total: -8.95 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.03 Total: 15.61 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.33 -9.29 -43.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023483509.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.961 kcal (2) G-P(sol) polarization free energy of solvation -34.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds