Wall clock time and date at job start Tue Mar 31 2020 04:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 120.00178 * 2 1 4 4 H 1.48504 * 109.46799 * 270.00239 * 3 2 1 5 5 H 1.48506 * 109.47122 * 29.99859 * 3 2 1 6 6 H 1.48493 * 109.47596 * 150.00162 * 3 2 1 7 7 C 1.38812 * 120.00071 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99838 * 168.80691 * 7 2 1 9 9 N 1.36932 * 119.99950 * 348.53383 * 7 2 1 10 10 C 1.46922 * 120.63153 * 328.91117 * 9 7 2 11 11 C 1.53199 * 108.77308 * 233.58626 * 10 9 7 12 12 C 1.53042 * 109.31032 * 305.35968 * 11 10 9 13 13 C 1.53031 * 109.53435 * 61.36853 * 12 11 10 14 14 C 1.46928 * 120.62883 * 148.62468 * 9 7 2 15 15 H 1.09001 * 109.58819 * 246.19734 * 14 9 7 16 16 C 1.52994 * 109.58725 * 6.63155 * 14 9 7 17 17 N 1.46494 * 109.47317 * 300.00740 * 16 14 9 18 18 C 1.34770 * 120.00467 * 180.02562 * 17 16 14 19 19 O 1.21523 * 119.99868 * 359.97438 * 18 17 16 20 20 C 1.48123 * 120.00396 * 180.02562 * 18 17 16 21 21 C 1.39813 * 119.37711 * 179.97438 * 20 18 17 22 22 C 1.36970 * 119.60956 * 179.97438 * 21 20 18 23 23 C 1.39813 * 118.25327 * 359.97438 * 22 21 20 24 24 N 1.34648 * 135.00445 * 179.97438 * 23 22 21 25 25 N 1.28674 * 109.16003 * 180.02562 * 24 23 22 26 26 N 1.28774 * 111.84584 * 359.97438 * 25 24 23 27 27 H 0.96995 * 125.85866 * 179.97438 * 26 25 24 28 28 C 1.37255 * 108.27959 * 0.02562 * 26 25 24 29 29 N 1.31960 * 134.70539 * 180.28884 * 28 26 25 30 30 H 0.97004 * 119.99456 * 359.97438 * 1 2 3 31 31 H 1.09007 * 109.58529 * 353.36770 * 10 9 7 32 32 H 1.08996 * 109.59069 * 113.65096 * 10 9 7 33 33 H 1.08990 * 109.49808 * 65.31575 * 11 10 9 34 34 H 1.09002 * 109.49320 * 185.37931 * 11 10 9 35 35 H 1.08997 * 109.45487 * 181.39006 * 12 11 10 36 36 H 1.09002 * 109.45686 * 301.36087 * 12 11 10 37 37 H 1.09000 * 109.50111 * 58.58920 * 13 12 11 38 38 H 1.09007 * 109.49501 * 178.65128 * 13 12 11 39 39 H 1.08998 * 109.47652 * 60.00945 * 16 14 9 40 40 H 1.09003 * 109.47344 * 180.02562 * 16 14 9 41 41 H 0.97006 * 119.99925 * 0.02562 * 17 16 14 42 42 H 1.08000 * 120.19668 * 359.97438 * 21 20 18 43 43 H 1.08000 * 120.87386 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.6999 7 6 2.0102 -1.2021 0.0005 8 1 3.0749 -1.2111 -0.1810 9 7 1.3461 -2.3761 0.2368 10 6 0.1672 -2.4059 1.1131 11 6 0.3842 -3.4680 2.1955 12 6 0.7079 -4.8084 1.5317 13 6 1.9971 -4.6781 0.7176 14 6 1.7952 -3.6287 -0.3862 15 1 1.0407 -3.9770 -1.0916 16 6 3.1169 -3.3918 -1.1195 17 7 2.9249 -2.3740 -2.1555 18 6 3.9599 -2.0012 -2.9340 19 8 5.0527 -2.5089 -2.7761 20 6 3.7660 -0.9717 -3.9812 21 6 4.8489 -0.5944 -4.7810 22 6 4.6747 0.3567 -5.7511 23 6 3.4043 0.9196 -5.9056 24 7 2.8666 1.8478 -6.7195 25 7 1.6215 1.9934 -6.4296 26 7 1.2610 1.2219 -5.4636 27 1 0.3707 1.1665 -5.0827 28 6 2.3531 0.4926 -5.0646 29 7 2.5677 -0.4311 -4.1469 30 1 -0.4849 0.8401 0.0004 31 1 0.0343 -1.4300 1.5802 32 1 -0.7177 -2.6539 0.5269 33 1 1.2135 -3.1698 2.8367 34 1 -0.5212 -3.5674 2.7944 35 1 0.8385 -5.5714 2.2990 36 1 -0.1111 -5.0938 0.8714 37 1 2.8115 -4.3685 1.3727 38 1 2.2401 -5.6393 0.2645 39 1 3.8701 -3.0500 -0.4096 40 1 3.4480 -4.3219 -1.5812 41 1 2.0527 -1.9684 -2.2813 42 1 5.8170 -1.0502 -4.6347 43 1 5.4972 0.6638 -6.3801 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024469690.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:06 Heat of formation + Delta-G solvation = 114.860400 kcal Electronic energy + Delta-G solvation = -28880.326981 eV Core-core repulsion = 24963.488338 eV Total energy + Delta-G solvation = -3916.838643 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.42513 -39.98828 -38.46570 -37.55920 -34.50803 -34.16671 -33.12343 -31.96562 -31.23533 -30.46424 -29.92327 -26.55329 -25.53639 -24.61847 -23.70523 -22.75975 -22.18152 -20.99305 -20.38539 -19.21815 -18.90854 -18.45880 -17.70352 -16.65235 -16.40932 -15.72966 -15.56742 -15.11836 -14.58443 -14.23280 -14.07075 -13.85915 -13.56318 -13.44572 -13.10641 -13.00673 -12.80414 -12.46041 -12.45113 -12.07865 -11.87484 -11.80657 -11.73956 -11.26607 -11.02105 -10.82439 -10.61465 -10.35599 -10.20799 -10.13366 -10.03921 -9.62045 -9.49500 -9.34189 -9.32101 -9.13418 -8.65578 -8.32273 -6.70425 -5.89879 -3.36505 0.08458 0.90704 2.04725 2.10177 2.90869 3.24948 3.33483 3.37383 3.43381 3.69658 3.82726 4.18690 4.32124 4.36930 4.70281 4.88388 5.18637 5.26573 5.27364 5.40430 5.46430 5.60017 5.62941 5.65613 5.79105 5.91814 5.98796 6.08610 6.17703 6.22994 6.32460 6.35745 6.52743 6.55210 6.66890 6.69874 6.81638 6.90585 7.01656 7.35215 7.37462 7.63321 7.72182 8.01254 8.12068 8.35234 8.63551 9.10807 9.71937 10.29783 11.16404 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.013469 B = 0.004473 C = 0.003844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.314351 B = 6258.071602 C = 7283.160239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.014 3.986 3 Si 0.890 3.110 4 H -0.290 1.290 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.248 4.248 8 H 0.068 0.932 9 N -0.589 5.589 10 C 0.173 3.827 11 C -0.144 4.144 12 C -0.107 4.107 13 C -0.127 4.127 14 C 0.159 3.841 15 H 0.033 0.967 16 C 0.130 3.870 17 N -0.665 5.665 18 C 0.559 3.441 19 O -0.549 6.549 20 C 0.158 3.842 21 C -0.123 4.123 22 C -0.009 4.009 23 C -0.030 4.030 24 N -0.244 5.244 25 N 0.004 4.996 26 N -0.399 5.399 27 H 0.461 0.539 28 C 0.221 3.779 29 N -0.429 5.429 30 H 0.253 0.747 31 H 0.087 0.913 32 H 0.018 0.982 33 H 0.053 0.947 34 H 0.046 0.954 35 H 0.044 0.956 36 H 0.052 0.948 37 H 0.061 0.939 38 H 0.051 0.949 39 H 0.071 0.929 40 H 0.061 0.939 41 H 0.426 0.574 42 H 0.166 0.834 43 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.268 -3.936 -6.956 8.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.185 4.185 3 Si 0.720 3.280 4 H -0.218 1.218 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.378 4.378 8 H 0.086 0.914 9 N -0.313 5.313 10 C 0.047 3.953 11 C -0.183 4.183 12 C -0.145 4.145 13 C -0.166 4.166 14 C 0.052 3.948 15 H 0.051 0.949 16 C 0.006 3.994 17 N -0.315 5.315 18 C 0.342 3.658 19 O -0.427 6.427 20 C 0.003 3.997 21 C -0.147 4.147 22 C -0.040 4.040 23 C -0.157 4.157 24 N -0.121 5.121 25 N 0.021 4.979 26 N -0.131 5.131 27 H 0.310 0.690 28 C -0.023 4.023 29 N -0.145 5.145 30 H 0.063 0.937 31 H 0.105 0.895 32 H 0.036 0.964 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.089 0.911 40 H 0.079 0.921 41 H 0.266 0.734 42 H 0.183 0.817 43 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 2.742 -3.297 -7.344 8.505 hybrid contribution 0.159 0.761 0.579 0.969 sum 2.901 -2.537 -6.765 7.786 Atomic orbital electron populations 1.69981 1.05043 1.25300 1.53828 1.25014 0.95152 0.97853 1.00521 0.86495 0.79557 0.84351 0.77624 1.21754 1.21547 1.20367 1.19144 0.91292 0.83690 1.43627 0.91400 1.44083 1.32877 1.02640 1.51675 1.20787 0.87880 0.97370 0.89223 1.22197 0.99823 0.96678 0.99646 1.21360 0.97372 0.97408 0.98376 1.22010 0.98065 0.98099 0.98466 1.20834 0.92849 0.88743 0.92351 0.94925 1.21424 0.98694 0.89825 0.89415 1.45992 1.13786 1.39585 1.32102 1.17633 0.85022 0.81790 0.81357 1.90755 1.24936 1.56112 1.70926 1.21415 0.87582 0.95143 0.95594 1.21746 1.01050 0.97362 0.94558 1.20448 0.93810 0.93118 0.96579 1.20666 0.96723 1.00085 0.98257 1.75352 0.99457 1.15748 1.21551 1.78056 1.09146 1.09794 1.00884 1.44700 1.12479 1.29016 1.26888 0.69043 1.19820 0.88097 0.97327 0.97085 1.66397 1.24163 1.07467 1.16454 0.93702 0.89451 0.96431 0.92833 0.93569 0.93709 0.92899 0.91996 0.93010 0.91052 0.92076 0.73357 0.81687 0.82539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.70 11.08 55.49 0.61 -23.08 16 2 C 0.01 0.36 5.03 -17.43 -0.09 0.27 16 3 Si 0.89 21.15 29.57 -169.99 -5.03 16.12 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.25 -6.02 6.95 -15.06 -0.10 -6.13 16 8 H 0.07 1.70 5.87 -52.48 -0.31 1.39 16 9 N -0.59 -13.00 2.97 -164.52 -0.49 -13.48 16 10 C 0.17 3.78 5.25 -3.71 -0.02 3.76 16 11 C -0.14 -2.59 6.08 -26.61 -0.16 -2.75 16 12 C -0.11 -1.69 5.88 -26.69 -0.16 -1.85 16 13 C -0.13 -2.02 5.40 -26.39 -0.14 -2.16 16 14 C 0.16 2.94 3.03 -67.37 -0.20 2.74 16 15 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 16 C 0.13 2.32 4.44 -4.05 -0.02 2.30 16 17 N -0.66 -12.46 3.83 -61.17 -0.23 -12.69 16 18 C 0.56 10.18 7.81 -12.21 -0.10 10.08 16 19 O -0.55 -10.61 16.29 5.35 0.09 -10.53 16 20 C 0.16 2.60 6.74 -82.93 -0.56 2.04 16 21 C -0.12 -1.62 9.55 -39.45 -0.38 -2.00 16 22 C -0.01 -0.11 10.16 -39.45 -0.40 -0.51 16 23 C -0.03 -0.44 7.38 -84.91 -0.63 -1.06 16 24 N -0.24 -3.69 12.43 32.12 0.40 -3.29 16 25 N 0.00 0.06 13.28 60.35 0.80 0.87 16 26 N -0.40 -5.50 7.06 31.13 0.22 -5.28 16 27 H 0.46 5.06 8.96 -190.26 -1.71 3.35 16 28 C 0.22 3.53 8.56 -156.27 -1.34 2.19 16 29 N -0.43 -7.41 9.54 -8.90 -0.08 -7.49 16 30 H 0.25 6.60 8.31 -40.82 -0.34 6.26 16 31 H 0.09 2.18 6.11 -51.93 -0.32 1.86 16 32 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.05 0.71 8.14 -51.92 -0.42 0.28 16 39 H 0.07 1.38 7.43 -51.93 -0.39 0.99 16 40 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.43 8.65 6.67 -40.82 -0.27 8.38 16 42 H 0.17 1.84 7.61 -52.49 -0.40 1.45 16 43 H 0.16 1.31 8.06 -52.49 -0.42 0.88 16 LS Contribution 351.93 15.07 5.30 5.30 Total: -1.00 -28.98 351.93 -9.45 -38.43 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -6.75 Total: 8.21 kcal Atomic # 6 Polarization: 11.21 SS G_CDS: -4.29 Total: 6.92 kcal Atomic # 7 Polarization: -65.69 SS G_CDS: 1.23 Total: -64.46 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.09 Total: -10.53 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.03 Total: 16.12 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -28.98 -9.45 -38.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024469690.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.293 kcal (2) G-P(sol) polarization free energy of solvation -28.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds