Wall clock time and date at job start Tue Mar 31 2020 04:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86801 * 119.99764 * 2 1 4 4 H 1.48500 * 109.47232 * 359.97438 * 3 2 1 5 5 H 1.48504 * 109.47153 * 120.00043 * 3 2 1 6 6 H 1.48502 * 109.46979 * 239.99739 * 3 2 1 7 7 C 1.38812 * 120.00164 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00090 * 167.46331 * 7 2 1 9 9 N 1.36940 * 119.99929 * 347.45464 * 7 2 1 10 10 C 1.46926 * 120.63024 * 328.91235 * 9 7 2 11 11 C 1.53189 * 108.77288 * 233.58186 * 10 9 7 12 12 C 1.53044 * 109.31300 * 305.36612 * 11 10 9 13 13 C 1.53039 * 109.53818 * 61.37027 * 12 11 10 14 14 C 1.46930 * 120.62859 * 148.62937 * 9 7 2 15 15 H 1.09004 * 109.58524 * 246.20572 * 14 9 7 16 16 C 1.53003 * 109.58462 * 6.62991 * 14 9 7 17 17 N 1.46498 * 109.47219 * 299.60349 * 16 14 9 18 18 C 1.34777 * 119.99893 * 180.02562 * 17 16 14 19 19 O 1.21569 * 119.99955 * 0.02562 * 18 17 16 20 20 C 1.47722 * 120.00098 * 179.97438 * 18 17 16 21 21 C 1.40128 * 120.34776 * 359.72498 * 20 18 17 22 22 N 1.31259 * 121.14479 * 179.71255 * 21 20 18 23 23 C 1.32724 * 121.80160 * 0.55539 * 22 21 20 24 24 N 1.37109 * 133.40361 * 179.73907 * 23 22 21 25 25 H 0.97006 * 126.59075 * 0.03689 * 24 23 22 26 26 N 1.40193 * 106.81871 * 179.97438 * 24 23 22 27 27 N 1.28667 * 109.51166 * 0.02562 * 26 24 23 28 28 C 1.35336 * 109.99570 * 359.97438 * 27 26 24 29 29 C 1.39427 * 120.35240 * 179.97438 * 20 18 17 30 30 H 0.97005 * 120.00484 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.58509 * 353.37123 * 10 9 7 32 32 H 1.09007 * 109.58232 * 113.65463 * 10 9 7 33 33 H 1.09000 * 109.50008 * 65.32117 * 11 10 9 34 34 H 1.09001 * 109.49671 * 185.38208 * 11 10 9 35 35 H 1.09005 * 109.45559 * 181.38902 * 12 11 10 36 36 H 1.08995 * 109.46095 * 301.35574 * 12 11 10 37 37 H 1.08996 * 109.49658 * 58.58090 * 13 12 11 38 38 H 1.08995 * 109.49411 * 178.65460 * 13 12 11 39 39 H 1.09000 * 109.47267 * 59.60264 * 16 14 9 40 40 H 1.09005 * 109.46599 * 179.60304 * 16 14 9 41 41 H 0.96998 * 120.00067 * 359.97438 * 17 16 14 42 42 H 1.07992 * 119.42266 * 359.97438 * 21 20 18 43 43 H 1.07996 * 120.95260 * 359.97438 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 1.2850 2.7465 -0.0006 5 1 3.1038 1.6965 1.2125 6 1 3.1038 1.6964 -1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0709 -1.2134 -0.2025 9 7 1.3500 -2.3738 0.2587 10 6 0.1855 -2.3953 1.1543 11 6 0.4202 -3.4472 2.2429 12 6 0.7333 -4.7938 1.5865 13 6 2.0092 -4.6712 0.7504 14 6 1.7891 -3.6323 -0.3596 15 1 1.0233 -3.9871 -1.0495 16 6 3.0987 -3.4023 -1.1166 17 7 2.8874 -2.4014 -2.1653 18 6 3.9093 -2.0372 -2.9650 19 8 5.0063 -2.5397 -2.8165 20 6 3.6961 -1.0284 -4.0228 21 6 2.4330 -0.4496 -4.2049 22 7 2.2274 0.4523 -5.1362 23 6 3.1963 0.8489 -5.9519 24 7 3.2485 1.7478 -6.9858 25 1 2.5160 2.2900 -7.3182 26 7 4.5643 1.7340 -7.4694 27 7 5.2634 0.8950 -6.7890 28 6 4.4935 0.3132 -5.8402 29 6 4.7481 -0.6459 -4.8540 30 1 -0.4851 0.8400 -0.0004 31 1 0.0602 -1.4150 1.6142 32 1 -0.7087 -2.6488 0.5848 33 1 1.2599 -3.1430 2.8678 34 1 -0.4753 -3.5408 2.8573 35 1 0.8764 -5.5496 2.3588 36 1 -0.0963 -5.0854 0.9424 37 1 2.8339 -4.3555 1.3893 38 1 2.2447 -5.6366 0.3025 39 1 3.8613 -3.0469 -0.4236 40 1 3.4263 -4.3385 -1.5686 41 1 2.0118 -2.0013 -2.2845 42 1 1.6156 -0.7476 -3.5652 43 1 5.7315 -1.0773 -4.7395 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024482243.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:09 Heat of formation + Delta-G solvation = 110.899692 kcal Electronic energy + Delta-G solvation = -28606.824932 eV Core-core repulsion = 24689.814539 eV Total energy + Delta-G solvation = -3917.010392 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.46705 -39.81175 -38.34114 -37.59178 -34.41373 -34.06463 -33.15213 -31.79194 -31.39905 -30.23959 -29.92346 -26.34837 -25.23909 -24.72030 -23.76438 -22.78704 -22.20213 -20.90131 -20.49196 -19.23217 -18.76913 -18.36666 -17.07452 -16.60283 -16.23730 -16.14070 -15.68469 -15.12927 -14.49348 -14.14283 -14.01338 -13.83760 -13.49999 -13.45875 -13.24865 -13.06744 -12.87919 -12.69214 -12.49359 -12.14553 -12.04018 -11.89602 -11.58517 -11.27598 -11.01802 -10.84542 -10.63183 -10.37101 -10.21761 -10.09210 -10.05554 -9.60476 -9.51657 -9.43841 -9.36848 -9.15011 -8.68692 -8.36601 -6.74745 -5.93243 -3.40873 0.09659 0.59603 1.86289 1.94354 2.93590 3.26039 3.34013 3.36714 3.37890 3.75975 3.84116 4.15600 4.17801 4.34277 4.58441 4.69867 5.05601 5.16292 5.23435 5.27161 5.43894 5.57231 5.59467 5.62556 5.81245 5.90502 5.97970 6.05699 6.08895 6.22304 6.31732 6.35264 6.51812 6.54378 6.65382 6.68676 6.79496 6.88589 6.99644 7.33056 7.39267 7.60397 7.61637 7.69554 8.01477 8.31833 8.59625 9.07311 9.68544 10.26972 11.12671 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.015382 B = 0.003949 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.860346 B = 7089.237372 C = 8156.983290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.012 3.988 3 Si 0.888 3.112 4 H -0.290 1.290 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.255 4.255 8 H 0.070 0.930 9 N -0.589 5.589 10 C 0.173 3.827 11 C -0.144 4.144 12 C -0.108 4.108 13 C -0.127 4.127 14 C 0.159 3.841 15 H 0.034 0.966 16 C 0.134 3.866 17 N -0.684 5.684 18 C 0.561 3.439 19 O -0.553 6.553 20 C -0.195 4.195 21 C 0.224 3.776 22 N -0.489 5.489 23 C 0.293 3.707 24 N -0.485 5.485 25 H 0.453 0.547 26 N 0.010 4.990 27 N -0.193 5.193 28 C -0.079 4.079 29 C 0.076 3.924 30 H 0.256 0.744 31 H 0.086 0.914 32 H 0.019 0.981 33 H 0.053 0.947 34 H 0.046 0.954 35 H 0.044 0.956 36 H 0.053 0.947 37 H 0.061 0.939 38 H 0.051 0.949 39 H 0.070 0.930 40 H 0.060 0.940 41 H 0.414 0.586 42 H 0.187 0.813 43 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.416 -3.477 -7.054 7.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.188 4.188 3 Si 0.718 3.282 4 H -0.216 1.216 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.385 4.385 8 H 0.087 0.913 9 N -0.313 5.313 10 C 0.047 3.953 11 C -0.184 4.184 12 C -0.145 4.145 13 C -0.167 4.167 14 C 0.052 3.948 15 H 0.052 0.948 16 C 0.011 3.989 17 N -0.334 5.334 18 C 0.346 3.654 19 O -0.433 6.433 20 C -0.204 4.204 21 C 0.051 3.949 22 N -0.203 5.203 23 C 0.048 3.952 24 N -0.211 5.211 25 H 0.301 0.699 26 N 0.027 4.973 27 N -0.074 5.074 28 C -0.204 4.204 29 C 0.045 3.955 30 H 0.066 0.934 31 H 0.104 0.896 32 H 0.037 0.963 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.089 0.911 40 H 0.078 0.922 41 H 0.253 0.747 42 H 0.203 0.797 43 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 2.270 -2.697 -8.129 8.861 hybrid contribution -0.485 0.971 0.673 1.278 sum 1.785 -1.726 -7.456 7.859 Atomic orbital electron populations 1.69962 1.05046 1.25744 1.53260 1.25045 0.95161 0.97895 1.00670 0.86595 0.79126 0.84001 0.78470 1.21558 1.20909 1.20889 1.19164 0.91648 0.83841 1.43810 0.91258 1.44087 1.34172 1.02407 1.50661 1.20782 0.88132 0.97428 0.88937 1.22195 0.99897 0.96637 0.99640 1.21363 0.97455 0.97391 0.98316 1.22009 0.98128 0.98164 0.98389 1.20842 0.92989 0.88641 0.92290 0.94826 1.21364 0.98595 0.90056 0.88922 1.45923 1.13346 1.41962 1.32196 1.17610 0.84929 0.81602 0.81258 1.90750 1.24351 1.56195 1.71984 1.20924 0.95199 1.03316 1.00938 1.23354 0.95963 0.85979 0.89604 1.66765 1.32056 1.15445 1.05990 1.19655 0.92069 0.92264 0.91216 1.47466 1.12350 1.34698 1.26595 0.69925 1.81670 0.84898 1.14515 1.16223 1.74842 1.25115 1.04024 1.03446 1.20382 0.92095 1.05567 1.02340 1.21042 1.00141 0.87971 0.86340 0.93383 0.89592 0.96298 0.92846 0.93566 0.93731 0.92865 0.92020 0.93008 0.91146 0.92168 0.74712 0.79650 0.81760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.73 11.14 55.49 0.62 -22.11 16 2 C 0.01 0.29 5.00 -17.43 -0.09 0.21 16 3 Si 0.89 20.25 29.57 -169.99 -5.03 15.22 16 4 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.26 -5.86 6.98 -15.06 -0.11 -5.96 16 8 H 0.07 1.64 5.87 -52.49 -0.31 1.33 16 9 N -0.59 -12.36 2.97 -164.51 -0.49 -12.84 16 10 C 0.17 3.63 5.26 -3.71 -0.02 3.62 16 11 C -0.14 -2.52 6.08 -26.61 -0.16 -2.68 16 12 C -0.11 -1.64 5.88 -26.69 -0.16 -1.79 16 13 C -0.13 -1.95 5.40 -26.39 -0.14 -2.10 16 14 C 0.16 2.77 3.03 -67.37 -0.20 2.57 16 15 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 16 C 0.13 2.26 4.44 -4.04 -0.02 2.24 16 17 N -0.68 -11.53 3.81 -61.29 -0.23 -11.76 16 18 C 0.56 9.56 7.77 -12.38 -0.10 9.46 16 19 O -0.55 -10.67 16.39 5.31 0.09 -10.58 16 20 C -0.20 -2.97 5.88 -104.87 -0.62 -3.59 16 21 C 0.22 3.32 10.69 -17.09 -0.18 3.14 16 22 N -0.49 -7.33 10.37 -12.03 -0.12 -7.46 16 23 C 0.29 4.20 8.49 -155.93 -1.32 2.87 16 24 N -0.49 -5.69 7.52 31.15 0.23 -5.45 16 25 H 0.45 3.65 8.96 -182.52 -1.64 2.01 16 26 N 0.01 0.13 13.82 60.35 0.83 0.96 16 27 N -0.19 -2.82 12.40 32.17 0.40 -2.42 16 28 C -0.08 -1.16 7.27 -84.74 -0.62 -1.77 16 29 C 0.08 1.10 9.75 -38.52 -0.38 0.72 16 30 H 0.26 6.48 8.31 -40.82 -0.34 6.14 16 31 H 0.09 2.07 6.15 -51.93 -0.32 1.75 16 32 H 0.02 0.42 8.14 -51.92 -0.42 0.00 16 33 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.07 1.31 7.41 -51.93 -0.38 0.93 16 40 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.41 7.06 5.44 -40.82 -0.22 6.84 16 42 H 0.19 2.62 6.39 -52.49 -0.34 2.28 16 43 H 0.16 2.18 7.71 -52.49 -0.40 1.77 16 LS Contribution 350.77 15.07 5.29 5.29 Total: -1.00 -27.81 350.77 -9.07 -36.88 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -6.55 Total: 7.34 kcal Atomic # 6 Polarization: 11.04 SS G_CDS: -4.11 Total: 6.93 kcal Atomic # 7 Polarization: -62.32 SS G_CDS: 1.24 Total: -61.08 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.09 Total: -10.58 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.03 Total: 15.22 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -27.81 -9.07 -36.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024482243.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.776 kcal (2) G-P(sol) polarization free energy of solvation -27.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds