Wall clock time and date at job start Tue Mar 31 2020 04:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 119.99825 * 2 1 4 4 H 1.48495 * 109.47394 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.46962 * 120.00200 * 3 2 1 6 6 H 1.48502 * 109.47095 * 239.99730 * 3 2 1 7 7 C 1.38812 * 120.00234 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00314 * 193.98987 * 7 2 1 9 9 N 1.36941 * 119.99811 * 13.98351 * 7 2 1 10 10 C 1.46919 * 120.63107 * 31.09516 * 9 7 2 11 11 C 1.53192 * 108.77941 * 126.36825 * 10 9 7 12 12 C 1.53042 * 109.31165 * 54.63269 * 11 10 9 13 13 C 1.53043 * 109.53965 * 298.63882 * 12 11 10 14 14 C 1.46928 * 120.62715 * 210.81163 * 9 7 2 15 15 H 1.09006 * 109.58153 * 113.84643 * 14 9 7 16 16 C 1.52996 * 109.59024 * 353.42238 * 14 9 7 17 17 N 1.46498 * 109.47235 * 60.22257 * 16 14 9 18 18 C 1.34782 * 119.99890 * 179.97438 * 17 16 14 19 19 O 1.21561 * 120.00180 * 0.02562 * 18 17 16 20 20 C 1.47724 * 119.99639 * 180.02562 * 18 17 16 21 21 C 1.40119 * 120.35212 * 0.02562 * 20 18 17 22 22 N 1.31263 * 121.14518 * 179.97438 * 21 20 18 23 23 C 1.32715 * 121.80382 * 0.02562 * 22 21 20 24 24 N 1.37113 * 133.40526 * 180.02562 * 23 22 21 25 25 H 0.96996 * 126.59083 * 0.02562 * 24 23 22 26 26 N 1.40194 * 106.81978 * 180.02562 * 24 23 22 27 27 N 1.28663 * 109.50730 * 359.97438 * 26 24 23 28 28 C 1.35332 * 110.00114 * 359.97438 * 27 26 24 29 29 C 1.39428 * 120.34822 * 179.72434 * 20 18 17 30 30 H 0.96998 * 120.00039 * 359.97438 * 1 2 3 31 31 H 1.09004 * 109.58590 * 246.15766 * 10 9 7 32 32 H 1.08999 * 109.59035 * 6.43557 * 10 9 7 33 33 H 1.08992 * 109.50185 * 174.58577 * 11 10 9 34 34 H 1.08998 * 109.49520 * 294.68460 * 11 10 9 35 35 H 1.08999 * 109.45964 * 58.65547 * 12 11 10 36 36 H 1.08997 * 109.45896 * 178.63389 * 12 11 10 37 37 H 1.08998 * 109.49835 * 181.31687 * 13 12 11 38 38 H 1.09000 * 109.49397 * 301.38259 * 13 12 11 39 39 H 1.08998 * 109.46969 * 180.22803 * 16 14 9 40 40 H 1.08997 * 109.47304 * 300.22431 * 16 14 9 41 41 H 0.97001 * 119.99778 * 0.02562 * 17 16 14 42 42 H 1.07995 * 119.42559 * 359.97438 * 21 20 18 43 43 H 1.08000 * 120.95411 * 0.02562 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2852 2.7464 0.0006 5 1 3.1039 1.6964 1.2125 6 1 3.1040 1.6964 -1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0663 -1.2161 0.2256 9 7 1.3560 -2.3704 -0.2876 10 6 0.2114 -2.3805 -1.2086 11 6 0.4703 -3.4178 -2.3057 12 6 0.7699 -4.7729 -1.6605 13 6 2.0271 -4.6609 -0.7951 14 6 1.7894 -3.6385 0.3147 15 1 1.0147 -4.0069 0.9874 16 6 3.0875 -3.4190 1.0941 17 7 2.8600 -2.4341 2.1544 18 6 3.8698 -2.0813 2.9744 19 8 4.9695 -2.5800 2.8339 20 6 3.6402 -1.0885 4.0440 21 6 2.3755 -0.5094 4.2129 22 7 2.1540 0.3739 5.1583 23 6 3.1106 0.7589 5.9938 24 7 3.1465 1.6414 7.0425 25 1 2.4083 2.1764 7.3736 26 7 4.4554 1.6218 7.5445 27 7 5.1654 0.7948 6.8608 28 6 4.4098 0.2261 5.8928 29 6 4.6781 -0.7225 4.9000 30 1 -0.4850 0.8400 0.0004 31 1 -0.6945 -2.6442 -0.6628 32 1 0.0939 -1.3936 -1.6564 33 1 -0.4116 -3.5041 -2.9403 34 1 1.3233 -3.1052 -2.9080 35 1 -0.0734 -5.0733 -1.0386 36 1 0.9306 -5.5183 -2.4393 37 1 2.2532 -5.6320 -0.3545 38 1 2.8656 -4.3371 -1.4117 39 1 3.4093 -4.3617 1.5367 40 1 3.8599 -3.0529 0.4178 41 1 1.9824 -2.0364 2.2668 42 1 1.5690 -0.7947 3.5537 43 1 5.6622 -1.1553 4.7968 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024482244.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:12 Heat of formation + Delta-G solvation = 110.950382 kcal Electronic energy + Delta-G solvation = -28605.589424 eV Core-core repulsion = 24688.581229 eV Total energy + Delta-G solvation = -3917.008194 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.46534 -39.81396 -38.35700 -37.61159 -34.41466 -34.06266 -33.16071 -31.78997 -31.40673 -30.24048 -29.95638 -26.34398 -25.24212 -24.71822 -23.76041 -22.78458 -22.22342 -20.90833 -20.49043 -19.22742 -18.76611 -18.36472 -17.07263 -16.60210 -16.23503 -16.13945 -15.69311 -15.12849 -14.49081 -14.14920 -14.01727 -13.84196 -13.50298 -13.45762 -13.24485 -13.06659 -12.88345 -12.69079 -12.49841 -12.15734 -12.04660 -11.89979 -11.58389 -11.28265 -11.02743 -10.84890 -10.63081 -10.36492 -10.21730 -10.09056 -10.06008 -9.60531 -9.51868 -9.43546 -9.36943 -9.14814 -8.68692 -8.36411 -6.75399 -5.93797 -3.40316 0.09896 0.59899 1.86515 1.94662 2.93866 3.26277 3.34262 3.37043 3.38174 3.76352 3.84409 4.15898 4.18073 4.34394 4.58748 4.70311 5.05796 5.15408 5.23727 5.27429 5.42706 5.57035 5.58984 5.63143 5.81511 5.89842 5.97839 6.05833 6.09107 6.22996 6.31278 6.34913 6.52113 6.53979 6.64715 6.67990 6.78879 6.88327 6.99701 7.31742 7.39624 7.58545 7.61916 7.69627 8.01856 8.31222 8.59926 9.06927 9.68529 10.26855 11.12534 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.015321 B = 0.003949 C = 0.003431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.111926 B = 7089.507530 C = 8159.802033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.013 3.987 3 Si 0.888 3.112 4 H -0.290 1.290 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.256 4.256 8 H 0.070 0.930 9 N -0.588 5.588 10 C 0.173 3.827 11 C -0.145 4.145 12 C -0.107 4.107 13 C -0.128 4.128 14 C 0.160 3.840 15 H 0.033 0.967 16 C 0.134 3.866 17 N -0.684 5.684 18 C 0.561 3.439 19 O -0.553 6.553 20 C -0.195 4.195 21 C 0.224 3.776 22 N -0.489 5.489 23 C 0.293 3.707 24 N -0.486 5.486 25 H 0.453 0.547 26 N 0.010 4.990 27 N -0.193 5.193 28 C -0.079 4.079 29 C 0.076 3.924 30 H 0.256 0.744 31 H 0.019 0.981 32 H 0.084 0.916 33 H 0.046 0.954 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.044 0.956 37 H 0.052 0.948 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.070 0.930 41 H 0.414 0.586 42 H 0.187 0.813 43 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.321 -3.612 6.967 7.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.187 4.187 3 Si 0.718 3.282 4 H -0.216 1.216 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.386 4.386 8 H 0.088 0.912 9 N -0.313 5.313 10 C 0.048 3.952 11 C -0.184 4.184 12 C -0.145 4.145 13 C -0.168 4.168 14 C 0.053 3.947 15 H 0.051 0.949 16 C 0.010 3.990 17 N -0.334 5.334 18 C 0.346 3.654 19 O -0.433 6.433 20 C -0.204 4.204 21 C 0.051 3.949 22 N -0.203 5.203 23 C 0.048 3.952 24 N -0.211 5.211 25 H 0.301 0.699 26 N 0.027 4.973 27 N -0.074 5.074 28 C -0.204 4.204 29 C 0.045 3.955 30 H 0.066 0.934 31 H 0.037 0.963 32 H 0.103 0.897 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.253 0.747 42 H 0.204 0.796 43 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 2.154 -2.850 8.072 8.827 hybrid contribution -0.468 0.977 -0.694 1.287 sum 1.687 -1.873 7.378 7.797 Atomic orbital electron populations 1.69979 1.05051 1.25765 1.53094 1.25028 0.95131 0.97906 1.00676 0.86602 0.79154 0.84013 0.78474 1.21564 1.20886 1.20913 1.19164 0.92016 0.84041 1.43341 0.91244 1.44061 1.35777 1.01900 1.49546 1.20765 0.88460 0.97516 0.88504 1.22194 0.99993 0.96577 0.99629 1.21361 0.97545 0.97383 0.98222 1.21870 0.98281 0.98258 0.98353 1.20654 0.93113 0.88569 0.92349 0.94899 1.21374 0.98598 0.90393 0.88594 1.45934 1.13725 1.42856 1.30917 1.17612 0.84953 0.81494 0.81346 1.90747 1.23915 1.55870 1.72761 1.20924 0.95338 1.03510 1.00604 1.23360 0.95730 0.85963 0.89832 1.66765 1.32343 1.15763 1.05388 1.19654 0.92072 0.92424 0.91050 1.47464 1.12624 1.35597 1.25432 0.69930 1.81669 0.84974 1.14517 1.16148 1.74837 1.24998 1.04295 1.03304 1.20381 0.92262 1.05748 1.01997 1.21044 1.00105 0.87978 0.86377 0.93391 0.96275 0.89744 0.93540 0.92834 0.92843 0.93702 0.92926 0.92046 0.92168 0.91158 0.74674 0.79621 0.81767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.70 11.23 55.49 0.62 -22.08 16 2 C 0.01 0.30 4.97 -17.43 -0.09 0.22 16 3 Si 0.89 20.25 29.58 -169.99 -5.03 15.22 16 4 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.26 -5.88 6.98 -15.06 -0.11 -5.98 16 8 H 0.07 1.64 5.84 -52.49 -0.31 1.33 16 9 N -0.59 -12.34 2.98 -165.03 -0.49 -12.83 16 10 C 0.17 3.64 5.27 -3.71 -0.02 3.62 16 11 C -0.14 -2.52 6.08 -26.61 -0.16 -2.68 16 12 C -0.11 -1.63 5.89 -26.69 -0.16 -1.79 16 13 C -0.13 -1.96 5.35 -26.83 -0.14 -2.10 16 14 C 0.16 2.79 2.99 -67.82 -0.20 2.58 16 15 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 16 C 0.13 2.26 4.42 -4.04 -0.02 2.24 16 17 N -0.68 -11.53 3.79 -61.29 -0.23 -11.76 16 18 C 0.56 9.56 7.77 -12.38 -0.10 9.46 16 19 O -0.55 -10.68 16.39 5.31 0.09 -10.59 16 20 C -0.20 -2.97 5.88 -104.87 -0.62 -3.59 16 21 C 0.22 3.32 10.69 -17.09 -0.18 3.14 16 22 N -0.49 -7.33 10.37 -12.03 -0.12 -7.46 16 23 C 0.29 4.20 8.49 -155.94 -1.32 2.87 16 24 N -0.49 -5.69 7.52 31.14 0.23 -5.46 16 25 H 0.45 3.65 8.96 -182.53 -1.64 2.01 16 26 N 0.01 0.13 13.82 60.35 0.83 0.96 16 27 N -0.19 -2.82 12.40 32.17 0.40 -2.42 16 28 C -0.08 -1.16 7.27 -84.74 -0.62 -1.77 16 29 C 0.08 1.10 9.75 -38.51 -0.38 0.72 16 30 H 0.26 6.48 8.31 -40.82 -0.34 6.14 16 31 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.08 2.03 6.19 -51.93 -0.32 1.71 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.07 1.31 7.42 -51.93 -0.39 0.92 16 41 H 0.41 7.08 5.43 -40.82 -0.22 6.86 16 42 H 0.19 2.63 6.39 -52.49 -0.34 2.30 16 43 H 0.16 2.17 7.71 -52.49 -0.40 1.77 16 LS Contribution 350.75 15.07 5.29 5.29 Total: -1.00 -27.80 350.75 -9.07 -36.87 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -6.55 Total: 7.32 kcal Atomic # 6 Polarization: 11.04 SS G_CDS: -4.11 Total: 6.94 kcal Atomic # 7 Polarization: -62.28 SS G_CDS: 1.24 Total: -61.04 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.09 Total: -10.59 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.03 Total: 15.22 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -27.80 -9.07 -36.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024482244.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.824 kcal (2) G-P(sol) polarization free energy of solvation -27.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds