Wall clock time and date at job start Tue Mar 31 2020 04:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 120.00137 * 2 1 4 4 H 1.48508 * 109.46879 * 239.99941 * 3 2 1 5 5 H 1.48499 * 109.47207 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47131 * 120.00050 * 3 2 1 7 7 C 1.38811 * 120.00229 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00497 * 169.31022 * 7 2 1 9 9 N 1.36942 * 119.99472 * 349.03450 * 7 2 1 10 10 C 1.46924 * 120.63427 * 328.90531 * 9 7 2 11 11 C 1.53187 * 108.78131 * 233.59039 * 10 9 7 12 12 C 1.53048 * 109.30872 * 305.36683 * 11 10 9 13 13 C 1.53033 * 109.54059 * 61.36079 * 12 11 10 14 14 C 1.46925 * 120.62983 * 148.62929 * 9 7 2 15 15 H 1.09001 * 109.58767 * 246.20062 * 14 9 7 16 16 C 1.53004 * 109.58647 * 6.62893 * 14 9 7 17 17 N 1.46505 * 109.46777 * 300.53745 * 16 14 9 18 18 C 1.34776 * 120.00002 * 180.02562 * 17 16 14 19 19 O 1.21543 * 120.00019 * 0.02562 * 18 17 16 20 20 C 1.47878 * 120.00054 * 180.02562 * 18 17 16 21 21 C 1.39447 * 121.11252 * 359.71742 * 20 18 17 22 22 C 1.38622 * 119.37232 * 179.77634 * 21 20 18 23 23 N 1.31579 * 121.63706 * 0.51669 * 22 21 20 24 24 C 1.32213 * 121.86479 * 359.74031 * 23 22 21 25 25 N 1.37216 * 134.67165 * 180.02562 * 24 23 22 26 26 H 0.96996 * 125.87046 * 0.02562 * 25 24 23 27 27 N 1.28780 * 108.25973 * 180.02562 * 25 24 23 28 28 N 1.28691 * 111.76040 * 359.97438 * 27 25 24 29 29 C 1.34397 * 109.15180 * 0.02562 * 28 27 25 30 30 H 0.97005 * 119.99707 * 0.02562 * 1 2 3 31 31 H 1.09007 * 109.58139 * 353.37724 * 10 9 7 32 32 H 1.09001 * 109.58826 * 113.65598 * 10 9 7 33 33 H 1.08998 * 109.49515 * 65.31178 * 11 10 9 34 34 H 1.08999 * 109.50119 * 185.38130 * 11 10 9 35 35 H 1.08999 * 109.46041 * 181.38517 * 12 11 10 36 36 H 1.09005 * 109.45800 * 301.35451 * 12 11 10 37 37 H 1.09003 * 109.49944 * 58.59042 * 13 12 11 38 38 H 1.09001 * 109.49825 * 178.64507 * 13 12 11 39 39 H 1.08993 * 109.47633 * 60.53606 * 16 14 9 40 40 H 1.09001 * 109.47237 * 180.54584 * 16 14 9 41 41 H 0.97001 * 119.99626 * 0.02562 * 17 16 14 42 42 H 1.08005 * 120.31552 * 359.97438 * 21 20 18 43 43 H 1.08001 * 119.18340 * 180.23392 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2126 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0762 -1.2104 -0.1729 9 7 1.3443 -2.3771 0.2267 10 6 0.1588 -2.4108 1.0939 11 6 0.3675 -3.4775 2.1733 12 6 0.6964 -4.8150 1.5061 13 6 1.9917 -4.6812 0.7023 14 6 1.7981 -3.6270 -0.3982 15 1 1.0490 -3.9722 -1.1109 16 6 3.1254 -3.3870 -1.1205 17 7 2.9441 -2.3556 -2.1451 18 6 3.9856 -1.9778 -2.9126 19 8 5.0751 -2.4931 -2.7550 20 6 3.8029 -0.9365 -3.9465 21 6 2.5619 -0.3342 -4.1511 22 6 2.4324 0.6416 -5.1272 23 7 3.4505 1.0089 -5.8753 24 6 4.6504 0.4721 -5.7334 25 7 5.8646 0.6477 -6.3479 26 1 6.0522 1.2689 -7.0689 27 7 6.7124 -0.1540 -5.8030 28 7 6.1725 -0.8572 -4.8702 29 6 4.8749 -0.5245 -4.7621 30 1 -0.4850 0.8401 -0.0004 31 1 0.0224 -1.4369 1.5642 32 1 -0.7216 -2.6563 0.5000 33 1 1.1921 -3.1821 2.8221 34 1 -0.5423 -3.5795 2.7649 35 1 0.8212 -5.5814 2.2710 36 1 -0.1175 -5.0976 0.8384 37 1 2.8011 -4.3745 1.3649 38 1 2.2382 -5.6405 0.2470 39 1 3.8757 -3.0573 -0.4019 40 1 3.4554 -4.3129 -1.5915 41 1 2.0745 -1.9447 -2.2711 42 1 1.7105 -0.6229 -3.5525 43 1 1.4707 1.1087 -5.2804 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024545370.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:38 Heat of formation + Delta-G solvation = 118.494700 kcal Electronic energy + Delta-G solvation = -28921.183165 eV Core-core repulsion = 25004.502117 eV Total energy + Delta-G solvation = -3916.681048 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.39481 -39.73285 -38.61022 -37.65186 -34.32444 -34.13334 -33.14446 -32.13608 -30.83076 -30.51258 -29.93791 -26.43480 -25.48384 -24.56628 -23.86062 -22.89000 -22.17622 -20.96184 -20.49790 -19.24353 -18.65911 -18.45440 -17.33624 -16.61646 -16.46472 -15.71055 -15.53522 -15.18501 -14.61652 -14.40435 -14.07319 -13.82002 -13.52067 -13.46235 -13.21840 -12.93431 -12.73974 -12.46757 -12.33453 -12.06936 -11.88018 -11.65696 -11.45327 -11.23203 -10.99725 -10.84289 -10.61559 -10.35452 -10.20092 -10.05043 -10.04278 -9.59964 -9.48745 -9.27667 -9.27353 -9.08112 -8.66837 -8.29612 -6.73387 -5.92470 -3.40486 0.08056 0.88359 2.09436 2.19950 3.05696 3.25998 3.32806 3.38298 3.42981 3.77589 3.85344 4.24977 4.34365 4.45105 4.66219 4.82788 5.17763 5.23986 5.25599 5.45850 5.47378 5.55337 5.61855 5.64983 5.80591 5.93038 6.00473 6.10860 6.19629 6.25577 6.33616 6.37856 6.54002 6.56607 6.67286 6.70379 6.82003 6.92044 7.05055 7.35077 7.44114 7.62929 7.70325 8.08611 8.15233 8.33078 8.69473 9.08306 9.69034 10.27395 11.13057 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.014683 B = 0.004324 C = 0.003684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.501544 B = 6473.824972 C = 7598.369549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.011 3.989 3 Si 0.888 3.112 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.283 1.283 7 C -0.251 4.251 8 H 0.070 0.930 9 N -0.589 5.589 10 C 0.172 3.828 11 C -0.145 4.145 12 C -0.107 4.107 13 C -0.127 4.127 14 C 0.160 3.840 15 H 0.034 0.966 16 C 0.134 3.866 17 N -0.682 5.682 18 C 0.542 3.458 19 O -0.525 6.525 20 C 0.000 4.000 21 C -0.134 4.134 22 C 0.164 3.836 23 N -0.467 5.467 24 C 0.211 3.789 25 N -0.410 5.410 26 H 0.455 0.545 27 N -0.008 5.008 28 N -0.207 5.207 29 C 0.001 3.999 30 H 0.256 0.744 31 H 0.088 0.912 32 H 0.018 0.982 33 H 0.052 0.948 34 H 0.046 0.954 35 H 0.044 0.956 36 H 0.052 0.948 37 H 0.061 0.939 38 H 0.051 0.949 39 H 0.069 0.931 40 H 0.060 0.940 41 H 0.415 0.585 42 H 0.167 0.833 43 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.656 -1.540 -8.460 8.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.189 4.189 3 Si 0.717 3.283 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.210 1.210 7 C -0.381 4.381 8 H 0.087 0.913 9 N -0.314 5.314 10 C 0.047 3.953 11 C -0.184 4.184 12 C -0.145 4.145 13 C -0.167 4.167 14 C 0.053 3.947 15 H 0.052 0.948 16 C 0.011 3.989 17 N -0.334 5.334 18 C 0.326 3.674 19 O -0.402 6.402 20 C -0.017 4.017 21 C -0.158 4.158 22 C -0.007 4.007 23 N -0.181 5.181 24 C -0.033 4.033 25 N -0.140 5.140 26 H 0.302 0.698 27 N 0.009 4.991 28 N -0.083 5.083 29 C -0.128 4.128 30 H 0.066 0.934 31 H 0.106 0.894 32 H 0.037 0.963 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.088 0.912 40 H 0.078 0.922 41 H 0.254 0.746 42 H 0.184 0.816 43 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 2.748 -1.695 -8.922 9.489 hybrid contribution -0.837 1.491 0.214 1.723 sum 1.911 -0.204 -8.708 8.918 Atomic orbital electron populations 1.69967 1.05003 1.25641 1.53664 1.25049 0.95196 0.97844 1.00763 0.86597 0.79102 0.83911 0.78645 1.20779 1.21438 1.20953 1.19208 0.91346 0.83699 1.43842 0.91279 1.44093 1.32232 1.02775 1.52255 1.20805 0.87788 0.97351 0.89380 1.22201 0.99796 0.96719 0.99680 1.21363 0.97321 0.97410 0.98415 1.22011 0.98023 0.98140 0.98535 1.20838 0.92806 0.88644 0.92405 0.94814 1.21357 0.98518 0.89482 0.89575 1.45944 1.12982 1.40118 1.34343 1.17817 0.85213 0.82609 0.81728 1.90813 1.24862 1.55122 1.69382 1.19814 0.90899 0.96375 0.94580 1.22620 0.97705 0.96617 0.98868 1.22871 0.96188 0.92543 0.89138 1.66322 0.96936 1.27324 1.27518 1.19867 0.89327 0.98039 0.96020 1.44613 1.04873 1.33250 1.31285 0.69754 1.78208 1.16543 0.99659 1.04711 1.75536 1.05350 1.17456 1.09950 1.20124 0.93733 0.99420 0.99493 0.93423 0.89367 0.96342 0.92872 0.93562 0.93735 0.92874 0.92027 0.92998 0.91241 0.92192 0.74609 0.81592 0.80046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.53 11.05 55.49 0.61 -21.92 16 2 C 0.01 0.26 5.04 -17.43 -0.09 0.17 16 3 Si 0.89 20.10 29.57 -169.99 -5.03 15.08 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.25 -5.87 6.91 -15.06 -0.10 -5.97 16 8 H 0.07 1.69 5.87 -52.49 -0.31 1.38 16 9 N -0.59 -12.58 2.97 -164.52 -0.49 -13.07 16 10 C 0.17 3.66 5.25 -3.71 -0.02 3.64 16 11 C -0.14 -2.56 6.08 -26.61 -0.16 -2.72 16 12 C -0.11 -1.67 5.88 -26.69 -0.16 -1.83 16 13 C -0.13 -2.03 5.40 -26.39 -0.14 -2.17 16 14 C 0.16 2.88 3.04 -67.37 -0.20 2.68 16 15 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 16 C 0.13 2.41 4.44 -4.04 -0.02 2.39 16 17 N -0.68 -12.36 3.78 -61.24 -0.23 -12.59 16 18 C 0.54 10.46 7.79 -12.31 -0.10 10.36 16 19 O -0.52 -11.69 16.27 5.33 0.09 -11.60 16 20 C 0.00 0.00 5.92 -104.51 -0.62 -0.62 16 21 C -0.13 -1.88 9.61 -38.99 -0.37 -2.26 16 22 C 0.16 1.99 11.14 -17.52 -0.20 1.80 16 23 N -0.47 -6.32 10.35 -12.38 -0.13 -6.44 16 24 C 0.21 3.12 8.56 -156.20 -1.34 1.78 16 25 N -0.41 -5.02 7.06 31.11 0.22 -4.80 16 26 H 0.45 3.44 8.96 -190.26 -1.71 1.74 16 27 N -0.01 -0.13 13.29 60.35 0.80 0.68 16 28 N -0.21 -3.83 11.92 32.23 0.38 -3.45 16 29 C 0.00 0.02 6.97 -84.72 -0.59 -0.57 16 30 H 0.26 6.35 8.31 -40.82 -0.34 6.01 16 31 H 0.09 2.14 6.09 -51.92 -0.32 1.82 16 32 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.07 1.38 7.46 -51.93 -0.39 0.99 16 40 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.41 7.43 5.47 -40.82 -0.22 7.21 16 42 H 0.17 2.16 6.53 -52.48 -0.34 1.82 16 43 H 0.18 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 349.65 15.07 5.27 5.27 Total: -1.00 -30.22 349.65 -9.25 -39.47 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -6.65 Total: 6.70 kcal Atomic # 6 Polarization: 10.77 SS G_CDS: -4.11 Total: 6.67 kcal Atomic # 7 Polarization: -62.76 SS G_CDS: 1.17 Total: -61.58 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: 0.09 Total: -11.60 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.03 Total: 15.08 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.22 -9.25 -39.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024545370.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.969 kcal (2) G-P(sol) polarization free energy of solvation -30.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds