Wall clock time and date at job start Tue Mar 31 2020 04:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86802 * 119.99660 * 2 1 4 4 H 1.48496 * 109.47245 * 269.99957 * 3 2 1 5 5 H 1.48498 * 109.47404 * 30.00141 * 3 2 1 6 6 H 1.48506 * 109.46794 * 149.99860 * 3 2 1 7 7 C 1.38806 * 120.00233 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00105 * 179.97438 * 7 2 1 9 9 N 1.36943 * 120.00072 * 0.02562 * 7 2 1 10 10 C 1.46499 * 120.00193 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.46988 * 155.00050 * 10 9 7 12 12 C 1.53003 * 109.47080 * 180.02562 * 11 10 9 13 13 C 1.53007 * 109.46810 * 299.99990 * 12 11 10 14 14 N 1.46499 * 109.47219 * 180.02562 * 13 12 11 15 15 C 1.34773 * 120.00321 * 154.99747 * 14 13 12 16 16 O 1.21571 * 119.99634 * 0.02562 * 15 14 13 17 17 C 1.47719 * 119.99956 * 179.97438 * 15 14 13 18 18 C 1.40114 * 120.35342 * 0.02562 * 17 15 14 19 19 N 1.31265 * 121.14834 * 179.72038 * 18 17 15 20 20 C 1.32713 * 121.80105 * 0.25627 * 19 18 17 21 21 N 1.37116 * 133.40549 * 179.97438 * 20 19 18 22 22 H 0.97006 * 126.59267 * 0.03030 * 21 20 19 23 23 N 1.40184 * 106.82209 * 180.02562 * 21 20 19 24 24 N 1.28672 * 109.51194 * 0.02562 * 23 21 20 25 25 C 1.35333 * 109.99424 * 359.97438 * 24 23 21 26 26 C 1.39435 * 120.34825 * 180.23255 * 17 15 14 27 27 C 1.52996 * 109.47291 * 60.00139 * 13 12 11 28 28 C 1.52998 * 109.47134 * 275.00380 * 10 9 7 29 29 H 0.96996 * 120.00470 * 359.97438 * 1 2 3 30 30 H 0.96995 * 119.99673 * 0.02562 * 9 7 2 31 31 H 1.09000 * 109.46928 * 34.99963 * 10 9 7 32 32 H 1.09000 * 109.47358 * 60.00176 * 11 10 9 33 33 H 1.08998 * 109.46968 * 300.00014 * 11 10 9 34 34 H 1.08995 * 109.47147 * 180.02562 * 12 11 10 35 35 H 1.09000 * 109.47244 * 59.99662 * 12 11 10 36 36 H 1.09000 * 109.46949 * 299.99853 * 13 12 11 37 37 H 0.97006 * 119.99521 * 334.99851 * 14 13 12 38 38 H 1.08002 * 119.42781 * 0.02562 * 18 17 15 39 39 H 1.08001 * 120.95460 * 0.02562 * 26 17 15 40 40 H 1.09000 * 109.47358 * 59.99964 * 27 13 12 41 41 H 1.09002 * 109.47417 * 179.97438 * 27 13 12 42 42 H 1.09000 * 109.46872 * 299.99617 * 28 10 9 43 43 H 1.08994 * 109.47488 * 60.00178 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2020 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.1809 -4.7521 0.6101 12 6 1.9462 -6.0770 0.6107 13 6 2.3106 -6.4561 -0.8262 14 7 3.0428 -7.7249 -0.8257 15 6 3.0343 -8.5083 -1.9224 16 8 2.4193 -8.1617 -2.9122 17 6 3.7731 -9.7875 -1.9221 18 6 4.4847 -10.1938 -0.7856 19 7 5.1420 -11.3299 -0.7663 20 6 5.1684 -12.1405 -1.8168 21 7 5.7622 -13.3529 -2.0566 22 1 6.3100 -13.8610 -1.4379 23 7 5.4255 -13.7173 -3.3677 24 7 4.6859 -12.8037 -3.8912 25 6 4.4845 -11.8048 -3.0006 26 6 3.7731 -10.6012 -3.0543 27 6 3.1878 -5.3607 -1.4358 28 6 2.4221 -4.0355 -1.4364 29 1 -0.4851 0.8400 0.0004 30 1 0.3556 -2.3881 -0.0002 31 1 2.9688 -3.5505 0.5900 32 1 0.2702 -4.8584 0.0207 33 1 0.9217 -4.4822 1.6339 34 1 1.3211 -6.8574 1.0446 35 1 2.8567 -5.9704 1.2004 36 1 1.4001 -6.5626 -1.4158 37 1 3.5337 -8.0013 -0.0361 38 1 4.4884 -9.5637 0.0916 39 1 3.2368 -10.3123 -3.9461 40 1 4.0983 -5.2542 -0.8461 41 1 3.4477 -5.6310 -2.4592 42 1 1.5114 -4.1418 -2.0259 43 1 3.0470 -3.2553 -1.8707 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026506478.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:02 Heat of formation + Delta-G solvation = 65.365249 kcal Electronic energy + Delta-G solvation = -26832.961681 eV Core-core repulsion = 22913.976767 eV Total energy + Delta-G solvation = -3918.984914 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.56446 -41.32919 -39.77789 -38.93836 -36.39064 -35.19307 -34.71519 -32.95043 -32.65180 -31.63462 -31.58165 -28.91712 -26.24405 -25.75699 -25.11481 -23.89215 -23.57502 -22.58491 -21.77300 -20.94003 -19.87990 -19.66852 -18.99842 -18.17365 -17.68041 -17.31865 -16.99342 -16.68852 -16.12344 -15.82867 -15.36623 -15.25788 -14.97189 -14.95364 -14.65324 -14.37843 -14.14280 -13.94293 -13.75010 -13.40038 -13.18377 -13.10718 -13.00986 -12.81459 -12.71818 -12.40110 -12.26136 -12.09730 -11.95350 -11.65510 -11.43949 -11.32183 -11.13615 -10.80963 -10.71350 -10.55258 -10.33841 -9.97560 -8.94869 -7.90417 -5.17837 -0.98923 -0.57957 0.84666 0.88240 1.48706 1.50257 1.58223 1.63588 1.92873 2.50269 2.59113 2.68759 3.03205 3.06501 3.40901 3.42784 3.55951 3.72252 3.85821 3.92251 3.97316 4.13743 4.36307 4.45454 4.47809 4.48741 4.58985 4.67252 4.68463 4.72758 4.91198 4.95016 5.08187 5.19506 5.22797 5.33938 5.35818 5.48673 5.56475 5.62593 5.64452 5.71817 6.27947 6.32807 6.51238 6.56149 7.18121 7.38135 8.17549 8.38449 9.33267 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.036518 B = 0.001897 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.566605 B =14759.891268 C =14843.407430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.081 4.081 3 Si 0.969 3.031 4 H -0.292 1.292 5 H -0.297 1.297 6 H -0.267 1.267 7 C -0.233 4.233 8 H 0.076 0.924 9 N -0.740 5.740 10 C 0.170 3.830 11 C -0.115 4.115 12 C -0.106 4.106 13 C 0.153 3.847 14 N -0.698 5.698 15 C 0.571 3.429 16 O -0.571 6.571 17 C -0.201 4.201 18 C 0.230 3.770 19 N -0.489 5.489 20 C 0.290 3.710 21 N -0.464 5.464 22 H 0.469 0.531 23 N 0.010 4.990 24 N -0.215 5.215 25 C -0.090 4.090 26 C 0.079 3.921 27 C -0.114 4.114 28 C -0.124 4.124 29 H 0.249 0.751 30 H 0.371 0.629 31 H 0.050 0.950 32 H 0.051 0.949 33 H 0.066 0.934 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.069 0.931 37 H 0.419 0.581 38 H 0.222 0.778 39 H 0.162 0.838 40 H 0.080 0.920 41 H 0.050 0.950 42 H 0.038 0.962 43 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.448 -28.497 2.400 31.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.272 4.272 3 Si 0.798 3.202 4 H -0.219 1.219 5 H -0.224 1.224 6 H -0.192 1.192 7 C -0.365 4.365 8 H 0.094 0.906 9 N -0.379 5.379 10 C 0.062 3.938 11 C -0.153 4.153 12 C -0.144 4.144 13 C 0.049 3.951 14 N -0.350 5.350 15 C 0.358 3.642 16 O -0.451 6.451 17 C -0.210 4.210 18 C 0.057 3.943 19 N -0.203 5.203 20 C 0.045 3.955 21 N -0.192 5.192 22 H 0.321 0.679 23 N 0.027 4.973 24 N -0.096 5.096 25 C -0.216 4.216 26 C 0.048 3.952 27 C -0.153 4.153 28 C -0.165 4.165 29 H 0.058 0.942 30 H 0.202 0.798 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.085 0.915 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.087 0.913 37 H 0.258 0.742 38 H 0.238 0.762 39 H 0.180 0.820 40 H 0.099 0.901 41 H 0.068 0.932 42 H 0.056 0.944 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 12.800 -29.545 1.311 32.225 hybrid contribution -0.245 1.777 0.142 1.799 sum 12.554 -27.768 1.452 30.509 Atomic orbital electron populations 1.69812 1.06563 1.25803 1.60073 1.25529 0.96346 1.01003 1.04365 0.85203 0.77861 0.79912 0.77203 1.21924 1.22410 1.19201 1.19629 0.91403 0.85328 1.40108 0.90615 1.42700 1.05462 1.01228 1.88536 1.20537 0.94627 0.84958 0.93630 1.21645 0.98404 0.94344 1.00948 1.21675 1.02011 0.96471 0.94275 1.20899 0.94472 0.81726 0.98005 1.45740 1.52642 1.20534 1.16041 1.17907 0.79935 0.83195 0.83195 1.90842 1.45178 1.74362 1.34700 1.20635 1.06023 0.97578 0.96790 1.23707 0.84657 0.89148 0.96830 1.66857 1.22717 1.05042 1.25725 1.19763 0.94170 0.89387 0.92224 1.47549 1.42516 1.15298 1.13816 0.67874 1.81710 1.10258 1.16689 0.88621 1.74908 1.09807 0.99680 1.25185 1.20546 1.08454 0.99183 0.93394 1.21172 0.88566 0.86875 0.98591 1.21790 0.99076 0.93667 1.00754 1.22042 0.98999 0.96105 0.99364 0.94242 0.79785 0.93241 0.92992 0.91526 0.88888 0.88846 0.91277 0.74206 0.76167 0.82028 0.90117 0.93162 0.94357 0.94312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.53 13.06 21.65 0.28 -59.25 16 2 C -0.08 -4.61 5.50 84.86 0.47 -4.14 16 3 Si 0.97 46.03 29.55 68.60 2.03 48.05 16 4 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 5 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 6 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 7 C -0.23 -12.70 9.93 84.03 0.83 -11.86 16 8 H 0.08 3.96 7.83 -2.91 -0.02 3.93 16 9 N -0.74 -36.37 5.12 -322.95 -1.65 -38.03 16 10 C 0.17 6.17 2.77 44.99 0.12 6.29 16 11 C -0.11 -3.18 5.39 30.59 0.16 -3.02 16 12 C -0.11 -1.83 5.39 30.60 0.16 -1.66 16 13 C 0.15 3.07 2.45 44.99 0.11 3.18 16 14 N -0.70 -9.14 5.03 -445.52 -2.24 -11.39 16 15 C 0.57 10.31 7.74 86.75 0.67 10.98 16 16 O -0.57 -15.97 16.06 -3.94 -0.06 -16.03 16 17 C -0.20 -2.70 5.88 -20.03 -0.12 -2.82 16 18 C 0.23 1.86 10.69 85.23 0.91 2.77 16 19 N -0.49 -5.75 10.37 -191.98 -1.99 -7.74 16 20 C 0.29 4.23 8.49 134.01 1.14 5.37 16 21 N -0.46 -5.40 7.52 -55.37 -0.42 -5.81 16 22 H 0.47 1.95 8.96 -213.26 -1.91 0.04 16 23 N 0.01 0.17 13.82 37.02 0.51 0.69 16 24 N -0.22 -4.34 12.40 -52.14 -0.65 -4.99 16 25 C -0.09 -1.60 7.27 39.63 0.29 -1.31 16 26 C 0.08 1.30 9.75 22.96 0.22 1.53 16 27 C -0.11 -2.82 5.50 30.61 0.17 -2.65 16 28 C -0.12 -4.25 5.51 30.61 0.17 -4.09 16 29 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 30 H 0.37 19.80 7.80 -92.71 -0.72 19.08 16 31 H 0.05 1.77 8.08 -2.39 -0.02 1.75 16 32 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.07 1.77 7.58 -2.39 -0.02 1.75 16 37 H 0.42 1.78 6.64 -92.70 -0.62 1.16 16 38 H 0.22 -0.27 6.39 -2.91 -0.02 -0.29 16 39 H 0.16 2.77 7.71 -2.91 -0.02 2.75 16 40 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -76.76 360.96 -1.03 -77.79 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: -2.16 Total: 18.14 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: 5.32 Total: -1.43 kcal Atomic # 7 Polarization: -120.36 SS G_CDS: -6.15 Total: -126.52 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: -0.06 Total: -16.03 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.05 kcal Total: -76.76 -1.03 -77.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026506478.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.152 kcal (2) G-P(sol) polarization free energy of solvation -76.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds