Wall clock time and date at job start Tue Mar 31 2020 04:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 119.99899 * 2 1 4 4 H 1.48506 * 109.47182 * 240.00044 * 3 2 1 5 5 H 1.48498 * 109.47048 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47036 * 120.00221 * 3 2 1 7 7 C 1.38811 * 120.00386 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00380 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99683 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99732 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.46881 * 155.00396 * 10 9 7 12 12 C 1.53005 * 109.47042 * 179.97438 * 11 10 9 13 13 C 1.53001 * 109.47142 * 299.99971 * 12 11 10 14 14 N 1.46501 * 109.47010 * 179.97438 * 13 12 11 15 15 C 1.34774 * 119.99636 * 155.00035 * 14 13 12 16 16 O 1.21538 * 120.00266 * 359.97438 * 15 14 13 17 17 C 1.47882 * 119.99756 * 180.02562 * 15 14 13 18 18 C 1.39451 * 121.11304 * 359.71022 * 17 15 14 19 19 C 1.38614 * 119.37669 * 180.31083 * 18 17 15 20 20 N 1.31585 * 121.63462 * 359.94931 * 19 18 17 21 21 C 1.32210 * 121.86662 * 0.03353 * 20 19 18 22 22 N 1.37211 * 134.67345 * 179.97438 * 21 20 19 23 23 H 0.96995 * 125.87152 * 359.97438 * 22 21 20 24 24 N 1.28778 * 108.26009 * 180.02562 * 22 21 20 25 25 N 1.28692 * 111.76095 * 0.02562 * 24 22 21 26 26 C 1.34390 * 109.14897 * 359.97438 * 25 24 22 27 27 C 1.53004 * 109.47128 * 60.00081 * 13 12 11 28 28 C 1.53001 * 109.47010 * 275.00188 * 10 9 7 29 29 H 0.97003 * 119.99872 * 0.02562 * 1 2 3 30 30 H 0.97001 * 119.99689 * 0.02562 * 9 7 2 31 31 H 1.08995 * 109.47259 * 35.00111 * 10 9 7 32 32 H 1.09006 * 109.47059 * 60.00042 * 11 10 9 33 33 H 1.09000 * 109.46947 * 299.99893 * 11 10 9 34 34 H 1.08996 * 109.46996 * 179.97438 * 12 11 10 35 35 H 1.09000 * 109.46591 * 60.00070 * 12 11 10 36 36 H 1.09001 * 109.47003 * 300.00184 * 13 12 11 37 37 H 0.96995 * 119.99662 * 335.00257 * 14 13 12 38 38 H 1.08002 * 120.31049 * 0.26279 * 18 17 15 39 39 H 1.07997 * 119.18709 * 180.02562 * 19 18 17 40 40 H 1.09000 * 109.47370 * 59.99432 * 27 13 12 41 41 H 1.09002 * 109.47106 * 180.02562 * 27 13 12 42 42 H 1.09006 * 109.47414 * 300.00254 * 28 10 9 43 43 H 1.08996 * 109.47508 * 60.00183 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 6 1.1810 -4.7521 0.6090 12 6 1.9458 -6.0773 0.6085 13 6 2.3093 -6.4558 -0.8288 14 7 3.0421 -7.7243 -0.8292 15 6 3.0331 -8.5073 -1.9262 16 8 2.4167 -8.1612 -2.9148 17 6 3.7724 -9.7881 -1.9265 18 6 4.4913 -10.2054 -0.8068 19 6 5.1767 -11.4095 -0.8487 20 7 5.1661 -12.1727 -1.9206 21 6 4.5035 -11.8327 -3.0130 22 7 4.3151 -12.4067 -4.2449 23 1 4.6847 -13.2537 -4.5398 24 7 3.5642 -11.6273 -4.9427 25 7 3.2293 -10.5730 -4.2851 26 6 3.7792 -10.6243 -3.0600 27 6 3.1865 -5.3604 -1.4383 28 6 2.4222 -4.0355 -1.4376 29 1 -0.4850 0.8401 -0.0004 30 1 0.3556 -2.3880 -0.0005 31 1 2.9689 -3.5505 0.5889 32 1 0.2703 -4.8584 0.0195 33 1 0.9217 -4.4823 1.6328 34 1 1.3211 -6.8575 1.0431 35 1 2.8566 -5.9713 1.1977 36 1 1.3984 -6.5617 -1.4180 37 1 3.5337 -8.0006 -0.0400 38 1 4.5145 -9.5957 0.0844 39 1 5.7321 -11.7299 0.0203 40 1 4.0973 -5.2543 -0.8491 41 1 3.4451 -5.6298 -2.4624 42 1 1.5114 -4.1417 -2.0271 43 1 3.0470 -3.2552 -1.8719 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026526698.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:35 Heat of formation + Delta-G solvation = 98.414960 kcal Electronic energy + Delta-G solvation = -27191.549719 eV Core-core repulsion = 23273.997948 eV Total energy + Delta-G solvation = -3917.551771 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.85944 -40.43196 -39.24618 -37.92989 -34.96878 -34.63811 -33.30552 -32.27101 -31.29983 -30.54253 -30.40972 -27.56332 -25.90802 -24.37379 -23.95692 -23.23238 -22.38949 -21.55237 -20.79507 -19.76687 -19.12897 -18.88955 -17.88785 -17.06261 -17.00277 -16.41793 -15.80955 -15.41845 -15.14849 -14.98070 -14.36766 -14.04730 -13.81924 -13.71875 -13.55705 -13.37137 -13.03184 -12.75318 -12.56760 -12.12354 -12.06999 -11.94699 -11.81868 -11.45381 -11.06229 -10.80548 -10.77694 -10.70107 -10.50628 -10.20163 -10.11396 -9.90108 -9.82278 -9.76853 -9.57686 -9.57600 -9.04352 -8.83355 -6.92356 -5.73540 -3.02079 -0.44201 0.33849 1.66505 1.75486 2.48186 2.71669 3.22052 3.28944 3.45672 3.50206 3.51161 3.72523 3.92708 4.00771 4.23332 4.59113 4.61499 4.81813 4.96131 4.97489 5.02104 5.17794 5.26077 5.52494 5.58919 5.62716 5.67013 5.71651 5.82992 5.87159 6.02159 6.10103 6.20263 6.22859 6.29131 6.46813 6.56167 6.63743 6.73416 6.94457 6.99879 7.16817 7.27530 7.72001 7.72190 7.98118 8.45368 9.56160 10.14912 10.49206 11.49124 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.028594 B = 0.002105 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.006524 B =13298.579148 C =13625.162459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.287 1.287 7 C -0.237 4.237 8 H 0.069 0.931 9 N -0.726 5.726 10 C 0.177 3.823 11 C -0.121 4.121 12 C -0.118 4.118 13 C 0.146 3.854 14 N -0.716 5.716 15 C 0.548 3.452 16 O -0.495 6.495 17 C -0.005 4.005 18 C -0.143 4.143 19 C 0.162 3.838 20 N -0.459 5.459 21 C 0.214 3.786 22 N -0.406 5.406 23 H 0.458 0.542 24 N 0.004 4.996 25 N -0.207 5.207 26 C 0.003 3.997 27 C -0.124 4.124 28 C -0.133 4.133 29 H 0.255 0.745 30 H 0.384 0.616 31 H 0.046 0.954 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.091 0.909 37 H 0.397 0.603 38 H 0.160 0.840 39 H 0.184 0.816 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.057 0.943 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.647 -28.678 0.833 30.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.369 4.369 8 H 0.087 0.913 9 N -0.366 5.366 10 C 0.067 3.933 11 C -0.160 4.160 12 C -0.157 4.157 13 C 0.042 3.958 14 N -0.368 5.368 15 C 0.332 3.668 16 O -0.368 6.368 17 C -0.021 4.021 18 C -0.166 4.166 19 C -0.011 4.011 20 N -0.173 5.173 21 C -0.030 4.030 22 N -0.136 5.136 23 H 0.306 0.694 24 N 0.021 4.979 25 N -0.083 5.083 26 C -0.127 4.127 27 C -0.164 4.164 28 C -0.174 4.174 29 H 0.065 0.935 30 H 0.217 0.783 31 H 0.064 0.936 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.109 0.891 37 H 0.231 0.769 38 H 0.177 0.823 39 H 0.200 0.800 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 10.962 -28.756 -1.341 30.804 hybrid contribution 0.837 0.738 1.057 1.537 sum 11.799 -28.018 -0.284 30.403 Atomic orbital electron populations 1.69651 1.05083 1.25709 1.57742 1.24741 0.95507 0.97658 1.03154 0.86289 0.78526 0.83699 0.77800 1.21307 1.21742 1.21336 1.19188 0.90918 0.84169 1.42581 0.91293 1.42426 1.05797 0.99788 1.88569 1.20239 0.94271 0.85983 0.92769 1.21758 0.98988 0.93371 1.01848 1.21754 1.00912 0.98411 0.94613 1.21203 0.95527 0.81192 0.97831 1.46054 1.53213 1.21991 1.15505 1.17875 0.81681 0.83166 0.84102 1.90908 1.41147 1.72364 1.32364 1.19778 0.96746 0.94466 0.91147 1.22430 0.97289 0.98439 0.98471 1.22857 0.94613 0.89276 0.94315 1.66323 1.18575 1.34437 0.97979 1.19879 1.00431 0.92882 0.89801 1.44737 1.39023 1.21423 1.08393 0.69384 1.78300 1.03707 0.97344 1.18584 1.75628 1.18449 1.11661 1.02556 1.20150 1.01417 0.95947 0.95145 1.21901 0.98559 0.95346 1.00550 1.22226 0.99848 0.94430 1.00857 0.93501 0.78290 0.93600 0.91894 0.91283 0.91761 0.91465 0.89070 0.76851 0.82301 0.79956 0.92213 0.92242 0.92408 0.91751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.25 13.06 55.49 0.72 -27.53 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.42 29.55 -169.99 -5.02 17.40 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 7 C -0.24 -6.54 9.93 -15.06 -0.15 -6.69 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 N -0.73 -17.94 5.12 -53.42 -0.27 -18.21 16 10 C 0.18 3.37 2.77 -67.93 -0.19 3.18 16 11 C -0.12 -1.84 5.39 -26.73 -0.14 -1.99 16 12 C -0.12 -1.33 5.39 -26.73 -0.14 -1.47 16 13 C 0.15 1.80 2.46 -67.93 -0.17 1.64 16 14 N -0.72 -6.94 5.03 -54.74 -0.28 -7.22 16 15 C 0.55 6.78 7.76 -12.31 -0.10 6.69 16 16 O -0.49 -8.48 15.93 5.33 0.08 -8.40 16 17 C 0.00 -0.05 5.92 -104.50 -0.62 -0.67 16 18 C -0.14 -0.74 9.61 -38.99 -0.37 -1.11 16 19 C 0.16 0.75 11.14 -17.52 -0.20 0.55 16 20 N -0.46 -3.45 10.35 -12.39 -0.13 -3.58 16 21 C 0.21 2.00 8.56 -156.21 -1.34 0.66 16 22 N -0.41 -3.18 7.06 31.11 0.22 -2.96 16 23 H 0.46 1.60 8.96 -190.26 -1.71 -0.10 16 24 N 0.00 0.04 13.29 60.35 0.80 0.84 16 25 N -0.21 -2.91 11.92 32.23 0.38 -2.53 16 26 C 0.00 0.03 6.97 -84.72 -0.59 -0.56 16 27 C -0.12 -1.78 5.49 -26.75 -0.15 -1.92 16 28 C -0.13 -2.37 5.50 -26.75 -0.15 -2.52 16 29 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 30 H 0.38 10.13 7.80 -40.82 -0.32 9.81 16 31 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.09 1.34 7.58 -51.93 -0.39 0.95 16 37 H 0.40 2.30 6.75 -40.82 -0.28 2.03 16 38 H 0.16 0.22 6.53 -52.49 -0.34 -0.12 16 39 H 0.18 0.07 8.06 -52.49 -0.42 -0.35 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 360.06 15.07 5.43 5.43 Total: -1.00 -36.95 360.06 -9.26 -46.21 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -6.81 Total: 5.27 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: -4.39 Total: -4.73 kcal Atomic # 7 Polarization: -62.63 SS G_CDS: 1.45 Total: -61.18 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: 0.08 Total: -8.40 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -36.95 -9.26 -46.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026526698.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.627 kcal (2) G-P(sol) polarization free energy of solvation -36.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds