Wall clock time and date at job start Tue Mar 31 2020 04:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 119.99899 * 2 1 4 4 H 1.48506 * 109.47182 * 240.00044 * 3 2 1 5 5 H 1.48498 * 109.47048 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47036 * 120.00221 * 3 2 1 7 7 C 1.38811 * 120.00386 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00380 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99683 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99732 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.46881 * 155.00396 * 10 9 7 12 12 C 1.53005 * 109.47042 * 179.97438 * 11 10 9 13 13 C 1.53001 * 109.47142 * 299.99971 * 12 11 10 14 14 N 1.46501 * 109.47010 * 179.97438 * 13 12 11 15 15 C 1.34774 * 119.99636 * 155.00035 * 14 13 12 16 16 O 1.21538 * 120.00266 * 359.97438 * 15 14 13 17 17 C 1.47882 * 119.99756 * 180.02562 * 15 14 13 18 18 C 1.39451 * 121.11304 * 359.71022 * 17 15 14 19 19 C 1.38614 * 119.37669 * 180.31083 * 18 17 15 20 20 N 1.31585 * 121.63462 * 359.94931 * 19 18 17 21 21 C 1.32210 * 121.86662 * 0.03353 * 20 19 18 22 22 N 1.37211 * 134.67345 * 179.97438 * 21 20 19 23 23 H 0.96995 * 125.87152 * 359.97438 * 22 21 20 24 24 N 1.28778 * 108.26009 * 180.02562 * 22 21 20 25 25 N 1.28692 * 111.76095 * 0.02562 * 24 22 21 26 26 C 1.34390 * 109.14897 * 359.97438 * 25 24 22 27 27 C 1.53004 * 109.47128 * 60.00081 * 13 12 11 28 28 C 1.53001 * 109.47010 * 275.00188 * 10 9 7 29 29 H 0.97003 * 119.99872 * 0.02562 * 1 2 3 30 30 H 0.97001 * 119.99689 * 0.02562 * 9 7 2 31 31 H 1.08995 * 109.47259 * 35.00111 * 10 9 7 32 32 H 1.09006 * 109.47059 * 60.00042 * 11 10 9 33 33 H 1.09000 * 109.46947 * 299.99893 * 11 10 9 34 34 H 1.08996 * 109.46996 * 179.97438 * 12 11 10 35 35 H 1.09000 * 109.46591 * 60.00070 * 12 11 10 36 36 H 1.09001 * 109.47003 * 300.00184 * 13 12 11 37 37 H 0.96995 * 119.99662 * 335.00257 * 14 13 12 38 38 H 1.08002 * 120.31049 * 0.26279 * 18 17 15 39 39 H 1.07997 * 119.18709 * 180.02562 * 19 18 17 40 40 H 1.09000 * 109.47370 * 59.99432 * 27 13 12 41 41 H 1.09002 * 109.47106 * 180.02562 * 27 13 12 42 42 H 1.09006 * 109.47414 * 300.00254 * 28 10 9 43 43 H 1.08996 * 109.47508 * 60.00183 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 6 1.1810 -4.7521 0.6090 12 6 1.9458 -6.0773 0.6085 13 6 2.3093 -6.4558 -0.8288 14 7 3.0421 -7.7243 -0.8292 15 6 3.0331 -8.5073 -1.9262 16 8 2.4167 -8.1612 -2.9148 17 6 3.7724 -9.7881 -1.9265 18 6 4.4913 -10.2054 -0.8068 19 6 5.1767 -11.4095 -0.8487 20 7 5.1661 -12.1727 -1.9206 21 6 4.5035 -11.8327 -3.0130 22 7 4.3151 -12.4067 -4.2449 23 1 4.6847 -13.2537 -4.5398 24 7 3.5642 -11.6273 -4.9427 25 7 3.2293 -10.5730 -4.2851 26 6 3.7792 -10.6243 -3.0600 27 6 3.1865 -5.3604 -1.4383 28 6 2.4222 -4.0355 -1.4376 29 1 -0.4850 0.8401 -0.0004 30 1 0.3556 -2.3880 -0.0005 31 1 2.9689 -3.5505 0.5889 32 1 0.2703 -4.8584 0.0195 33 1 0.9217 -4.4823 1.6328 34 1 1.3211 -6.8575 1.0431 35 1 2.8566 -5.9713 1.1977 36 1 1.3984 -6.5617 -1.4180 37 1 3.5337 -8.0006 -0.0400 38 1 4.5145 -9.5957 0.0844 39 1 5.7321 -11.7299 0.0203 40 1 4.0973 -5.2543 -0.8491 41 1 3.4451 -5.6298 -2.4624 42 1 1.5114 -4.1417 -2.0271 43 1 3.0470 -3.2552 -1.8719 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026526698.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:35 Heat of formation + Delta-G solvation = 68.976317 kcal Electronic energy + Delta-G solvation = -27192.826274 eV Core-core repulsion = 23273.997948 eV Total energy + Delta-G solvation = -3918.828326 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.53723 -41.31292 -39.98452 -39.12671 -36.40088 -35.35646 -34.75518 -33.25320 -32.16577 -31.87261 -31.65280 -29.01272 -26.70346 -25.55418 -24.96722 -24.31447 -23.60003 -22.61365 -21.83630 -21.02281 -19.96643 -19.62818 -19.04499 -18.50155 -17.75888 -17.36653 -16.82941 -16.55095 -16.11764 -15.91526 -15.62459 -15.35012 -15.16537 -15.00927 -14.66901 -14.27789 -13.96962 -13.94181 -13.50827 -13.41222 -13.14346 -13.05192 -12.79982 -12.78752 -12.69269 -12.42514 -12.28272 -12.15701 -11.99355 -11.66810 -11.44441 -11.34627 -11.16224 -10.81838 -10.62046 -10.40209 -10.29131 -10.01511 -8.96760 -7.91132 -5.19035 -1.06794 -0.18810 0.97932 1.12811 1.47821 1.50976 1.56753 1.74975 1.87839 2.55693 2.58525 2.70191 3.15584 3.32374 3.40243 3.41618 3.73543 3.80676 3.87726 3.93333 4.15005 4.32558 4.34728 4.36755 4.41664 4.44326 4.57647 4.64209 4.69149 4.73672 4.89249 5.04823 5.15261 5.17857 5.21701 5.30201 5.31852 5.45497 5.54335 5.59273 5.64934 5.67875 6.31698 6.42980 6.50636 7.00122 7.17805 7.36928 8.15791 8.37154 9.32422 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.028594 B = 0.002105 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.006524 B =13298.579148 C =13625.162459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.081 4.081 3 Si 0.970 3.030 4 H -0.282 1.282 5 H -0.298 1.298 6 H -0.274 1.274 7 C -0.235 4.235 8 H 0.076 0.924 9 N -0.740 5.740 10 C 0.173 3.827 11 C -0.115 4.115 12 C -0.103 4.103 13 C 0.153 3.847 14 N -0.693 5.693 15 C 0.548 3.452 16 O -0.557 6.557 17 C -0.041 4.041 18 C -0.103 4.103 19 C 0.176 3.824 20 N -0.464 5.464 21 C 0.206 3.794 22 N -0.383 5.383 23 H 0.474 0.526 24 N -0.015 5.015 25 N -0.265 5.265 26 C -0.028 4.028 27 C -0.113 4.113 28 C -0.124 4.124 29 H 0.249 0.751 30 H 0.371 0.629 31 H 0.053 0.947 32 H 0.048 0.952 33 H 0.070 0.930 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.062 0.938 37 H 0.421 0.579 38 H 0.208 0.792 39 H 0.239 0.761 40 H 0.084 0.916 41 H 0.042 0.958 42 H 0.034 0.966 43 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.755 -30.982 4.217 34.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.273 4.273 3 Si 0.800 3.200 4 H -0.208 1.208 5 H -0.225 1.225 6 H -0.200 1.200 7 C -0.367 4.367 8 H 0.094 0.906 9 N -0.379 5.379 10 C 0.065 3.935 11 C -0.154 4.154 12 C -0.141 4.141 13 C 0.049 3.951 14 N -0.346 5.346 15 C 0.334 3.666 16 O -0.434 6.434 17 C -0.057 4.057 18 C -0.126 4.126 19 C 0.003 3.997 20 N -0.178 5.178 21 C -0.037 4.037 22 N -0.116 5.116 23 H 0.326 0.674 24 N 0.002 4.998 25 N -0.139 5.139 26 C -0.158 4.158 27 C -0.152 4.152 28 C -0.165 4.165 29 H 0.058 0.942 30 H 0.202 0.798 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.088 0.912 34 H 0.111 0.889 35 H 0.116 0.884 36 H 0.080 0.920 37 H 0.261 0.739 38 H 0.225 0.775 39 H 0.255 0.745 40 H 0.102 0.898 41 H 0.061 0.939 42 H 0.053 0.947 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 14.134 -31.137 2.049 34.256 hybrid contribution -0.017 1.334 0.100 1.338 sum 14.117 -29.803 2.149 33.047 Atomic orbital electron populations 1.69816 1.06609 1.25927 1.59950 1.25558 0.96363 1.01093 1.04255 0.85251 0.77189 0.79417 0.78171 1.20814 1.22452 1.20008 1.19597 0.91409 0.85306 1.40364 0.90588 1.42701 1.05459 1.01240 1.88546 1.20514 0.94721 0.84969 0.93343 1.21655 0.98320 0.94321 1.01067 1.21660 1.02160 0.96486 0.93840 1.20896 0.94258 0.81741 0.98242 1.45693 1.52605 1.20431 1.15856 1.18312 0.80839 0.83942 0.83525 1.90883 1.43904 1.73906 1.34719 1.19729 0.99433 0.93792 0.92706 1.23037 0.93418 0.98354 0.97758 1.23916 0.93090 0.88118 0.94539 1.66514 1.18250 1.35073 0.97978 1.19974 1.00807 0.92320 0.90592 1.44726 1.37561 1.21388 1.07955 0.67434 1.78181 1.04874 0.97632 1.19109 1.75533 1.20720 1.13207 1.04487 1.20563 1.02412 0.97684 0.95142 1.21763 0.99230 0.93784 1.00404 1.22039 0.98851 0.95976 0.99659 0.94201 0.79804 0.92928 0.93276 0.91158 0.88883 0.88443 0.92014 0.73944 0.77548 0.74513 0.89774 0.93918 0.94714 0.94276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.39 13.06 21.65 0.28 -60.11 16 2 C -0.08 -4.69 5.50 84.86 0.47 -4.23 16 3 Si 0.97 46.57 29.55 68.60 2.03 48.59 16 4 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 5 H -0.30 -14.50 7.11 99.48 0.71 -13.80 16 6 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 7 C -0.23 -13.03 9.93 84.03 0.83 -12.20 16 8 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 9 N -0.74 -37.29 5.12 -322.94 -1.65 -38.95 16 10 C 0.17 6.48 2.77 44.99 0.12 6.61 16 11 C -0.11 -3.35 5.39 30.60 0.16 -3.19 16 12 C -0.10 -1.94 5.39 30.60 0.16 -1.77 16 13 C 0.15 3.53 2.46 44.99 0.11 3.65 16 14 N -0.69 -11.36 5.03 -445.37 -2.24 -13.61 16 15 C 0.55 13.14 7.76 86.80 0.67 13.82 16 16 O -0.56 -20.15 15.93 -3.84 -0.06 -20.21 16 17 C -0.04 -0.73 5.92 -19.79 -0.12 -0.85 16 18 C -0.10 -0.52 9.61 22.65 0.22 -0.30 16 19 C 0.18 0.61 11.14 84.82 0.94 1.56 16 20 N -0.46 -5.33 10.35 -193.10 -2.00 -7.33 16 21 C 0.21 3.61 8.56 134.17 1.15 4.76 16 22 N -0.38 -5.98 7.06 -55.48 -0.39 -6.38 16 23 H 0.47 3.10 8.96 -219.84 -1.97 1.13 16 24 N -0.02 -0.37 13.29 37.02 0.49 0.12 16 25 N -0.26 -7.97 11.92 -51.94 -0.62 -8.59 16 26 C -0.03 -0.66 6.97 40.06 0.28 -0.38 16 27 C -0.11 -3.12 5.49 30.58 0.17 -2.96 16 28 C -0.12 -4.55 5.50 30.58 0.17 -4.39 16 29 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 30 H 0.37 20.27 7.80 -92.71 -0.72 19.54 16 31 H 0.05 1.92 8.08 -2.39 -0.02 1.90 16 32 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 33 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.06 1.85 7.58 -2.39 -0.02 1.83 16 37 H 0.42 2.52 6.75 -92.71 -0.63 1.89 16 38 H 0.21 -1.06 6.53 -2.91 -0.02 -1.08 16 39 H 0.24 -1.77 8.06 -2.91 -0.02 -1.79 16 40 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.03 1.40 8.14 -2.38 -0.02 1.38 16 43 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -89.12 360.06 -1.04 -90.16 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: -2.23 Total: 16.16 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: 5.35 Total: 0.13 kcal Atomic # 7 Polarization: -128.71 SS G_CDS: -6.13 Total: -134.84 kcal Atomic # 8 Polarization: -20.15 SS G_CDS: -0.06 Total: -20.21 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.59 kcal Total: -89.12 -1.04 -90.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026526698.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.140 kcal (2) G-P(sol) polarization free energy of solvation -89.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds