Wall clock time and date at job start Tue Mar 31 2020 05:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.40167 * 120.36327 * 2 1 4 4 N 1.31260 * 120.35498 * 179.97438 * 3 2 1 5 5 C 1.33987 * 120.88459 * 0.03856 * 4 3 2 6 6 N 1.32499 * 132.35204 * 179.97438 * 5 4 3 7 7 C 1.33467 * 109.75744 * 179.97438 * 6 5 4 8 8 C 1.48122 * 125.32303 * 179.97438 * 7 6 5 9 9 O 1.21524 * 119.99950 * 180.02562 * 8 7 6 10 10 N 1.34774 * 120.00265 * 0.02952 * 8 7 6 11 11 C 1.46503 * 120.00479 * 179.72403 * 10 8 7 12 12 C 1.52989 * 109.47376 * 185.11327 * 11 10 8 13 13 H 1.08998 * 109.87615 * 305.50607 * 12 11 10 14 14 C 1.54330 * 109.88533 * 66.68145 * 12 11 10 15 15 C 1.55160 * 102.94154 * 141.61062 * 14 12 11 16 16 C 1.54918 * 101.58321 * 324.49950 * 15 14 12 17 17 N 1.47025 * 109.88499 * 184.48918 * 12 11 10 18 18 C 1.36946 * 125.64422 * 61.67482 * 17 12 11 19 19 H 1.08004 * 119.99789 * 14.82376 * 18 17 12 20 20 C 1.38806 * 119.99749 * 194.82250 * 18 17 12 21 21 N 1.31619 * 120.00528 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99897 * 180.02562 * 20 18 17 23 23 H 1.48508 * 109.46885 * 0.02562 * 22 20 18 24 24 H 1.48493 * 109.47098 * 120.00184 * 22 20 18 25 25 H 1.48502 * 109.47121 * 240.00394 * 22 20 18 26 26 N 1.31987 * 109.35156 * 0.26880 * 7 6 5 27 27 N 1.36877 * 120.22044 * 359.96054 * 5 4 3 28 28 C 1.35680 * 120.36123 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.47432 * 270.02360 * 1 2 3 30 30 H 1.08997 * 109.47041 * 30.03017 * 1 2 3 31 31 H 1.09000 * 109.47010 * 150.02839 * 1 2 3 32 32 H 1.07995 * 119.82204 * 359.97438 * 3 2 1 33 33 H 0.97006 * 120.00156 * 359.97438 * 10 8 7 34 34 H 1.09001 * 109.46579 * 305.11569 * 11 10 8 35 35 H 1.08998 * 109.47092 * 65.10907 * 11 10 8 36 36 H 1.08989 * 110.72251 * 259.97352 * 14 12 11 37 37 H 1.09002 * 110.71671 * 23.24874 * 14 12 11 38 38 H 1.09002 * 111.00415 * 206.42958 * 15 14 12 39 39 H 1.08997 * 111.00740 * 82.57510 * 15 14 12 40 40 H 1.09002 * 110.36239 * 278.17403 * 16 15 14 41 41 H 1.09000 * 110.45788 * 155.89605 * 16 15 14 42 42 H 0.96998 * 120.00479 * 179.97438 * 21 20 18 43 43 H 1.08004 * 120.49126 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2156 1.2094 0.0000 4 7 3.5282 1.2092 0.0005 5 6 4.2158 0.0593 0.0003 6 7 5.5143 -0.2044 0.0002 7 6 5.7065 -1.5251 0.0005 8 6 7.0258 -2.1985 0.0000 9 8 7.0885 -3.4121 -0.0002 10 7 8.1567 -1.4654 -0.0002 11 6 9.4616 -2.1313 0.0054 12 6 10.5687 -1.0831 0.1324 13 1 10.4625 -0.3349 -0.6530 14 6 10.4957 -0.4079 1.5183 15 6 11.9897 -0.2327 1.8985 16 6 12.6173 -1.5125 1.2917 17 7 11.8846 -1.7308 0.0313 18 6 12.3526 -2.4220 -1.0544 19 1 11.8554 -2.3295 -2.0087 20 6 13.4659 -3.2413 -0.9283 21 7 14.0716 -3.3544 0.2348 22 14 14.1047 -4.1836 -2.4094 23 1 13.2540 -3.8862 -3.5898 24 1 15.5035 -3.7727 -2.6918 25 1 14.0647 -5.6404 -2.1242 26 7 4.5372 -2.1373 -0.0051 27 7 3.5542 -1.1390 0.0003 28 6 2.1929 -1.1707 0.0005 29 1 -0.3634 0.0004 1.0276 30 1 -0.3633 0.8897 -0.5143 31 1 -0.3633 -0.8902 -0.5134 32 1 1.6786 2.1464 -0.0004 33 1 8.1067 -0.4966 -0.0004 34 1 9.5144 -2.8198 0.8488 35 1 9.5907 -2.6854 -0.9244 36 1 9.9991 0.5599 1.4501 37 1 9.9884 -1.0533 2.2354 38 1 12.1174 -0.2104 2.9808 39 1 12.4075 0.6630 1.4389 40 1 12.4769 -2.3591 1.9638 41 1 13.6779 -1.3590 1.0924 42 1 14.8494 -3.9272 0.3229 43 1 1.6668 -2.1140 0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027957888.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:15 Heat of formation + Delta-G solvation = 130.595120 kcal Electronic energy + Delta-G solvation = -27107.823197 eV Core-core repulsion = 23191.666863 eV Total energy + Delta-G solvation = -3916.156334 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.31672 -39.93729 -38.90182 -37.55671 -35.18649 -34.38560 -33.52231 -32.45696 -31.17790 -29.77825 -28.95229 -27.75508 -25.90028 -25.03955 -24.34646 -23.34050 -22.92830 -20.53532 -20.10570 -19.57359 -18.99459 -18.42640 -17.43841 -17.11700 -16.57954 -16.18999 -15.74865 -15.12271 -14.78834 -14.72741 -14.38062 -14.23969 -13.84451 -13.81321 -13.41216 -13.16528 -13.13372 -12.98098 -12.88022 -12.21583 -12.04832 -11.86231 -11.70956 -11.30975 -10.92249 -10.78797 -10.69651 -10.52643 -10.29498 -10.20463 -10.03800 -10.03131 -9.86133 -9.78442 -9.67903 -9.20737 -8.75777 -8.56675 -6.82093 -5.75262 -3.11896 -0.14331 0.14720 1.32019 1.55208 2.64535 2.77154 3.03501 3.31540 3.41621 3.48134 3.50045 3.66627 3.71403 4.02783 4.25751 4.38878 4.51349 4.70014 4.86586 5.03236 5.17878 5.32556 5.35135 5.43657 5.52494 5.55423 5.62253 5.65074 5.68259 5.85501 6.07274 6.14578 6.30264 6.48674 6.51081 6.58564 6.71548 6.79542 6.89005 7.06215 7.29235 7.54348 7.63730 7.69932 7.81850 8.22015 8.28203 9.19173 9.79539 10.46965 11.36766 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.023263 B = 0.002323 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.337115 B =12049.698006 C =12755.576726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.187 4.187 3 C 0.212 3.788 4 N -0.444 5.444 5 C 0.436 3.564 6 N -0.496 5.496 7 C 0.247 3.753 8 C 0.601 3.399 9 O -0.508 6.508 10 N -0.691 5.691 11 C 0.107 3.893 12 C 0.152 3.848 13 H 0.041 0.959 14 C -0.127 4.127 15 C -0.148 4.148 16 C 0.172 3.828 17 N -0.588 5.588 18 C -0.234 4.234 19 H 0.077 0.923 20 C -0.002 4.002 21 N -0.914 5.914 22 Si 0.911 3.089 23 H -0.278 1.278 24 H -0.290 1.290 25 H -0.289 1.289 26 N -0.269 5.269 27 N -0.326 5.326 28 C 0.167 3.833 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.193 0.807 33 H 0.409 0.591 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.027 0.973 41 H 0.072 0.928 42 H 0.253 0.747 43 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.818 10.961 1.964 30.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.194 4.194 3 C 0.024 3.976 4 N -0.157 5.157 5 C 0.076 3.924 6 N -0.230 5.230 7 C -0.037 4.037 8 C 0.379 3.621 9 O -0.380 6.380 10 N -0.343 5.343 11 C -0.017 4.017 12 C 0.043 3.957 13 H 0.059 0.941 14 C -0.165 4.165 15 C -0.187 4.187 16 C 0.047 3.953 17 N -0.312 5.312 18 C -0.362 4.362 19 H 0.095 0.905 20 C -0.199 4.199 21 N -0.560 5.560 22 Si 0.741 3.259 23 H -0.203 1.203 24 H -0.217 1.217 25 H -0.216 1.216 26 N -0.102 5.102 27 N -0.106 5.106 28 C 0.031 3.969 29 H 0.100 0.900 30 H 0.101 0.899 31 H 0.095 0.905 32 H 0.209 0.791 33 H 0.245 0.755 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.045 0.955 41 H 0.091 0.909 42 H 0.064 0.936 43 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -27.401 9.972 1.904 29.222 hybrid contribution -0.488 -0.759 -0.720 1.155 sum -27.889 9.213 1.184 29.395 Atomic orbital electron populations 1.20644 0.86938 1.04361 1.03650 1.20667 0.99422 0.92020 1.07313 1.23637 0.88075 0.98961 0.86917 1.68093 1.08715 1.22345 1.16572 1.22693 0.89381 0.82887 0.97436 1.70853 1.10828 1.13820 1.27485 1.24489 0.95234 0.87578 0.96360 1.16389 0.80726 0.86004 0.78960 1.90873 1.85798 1.12335 1.48997 1.45945 1.05442 1.11041 1.71824 1.22488 0.78781 0.97318 1.03141 1.21152 0.86381 0.92831 0.95343 0.94092 1.22625 0.97589 0.99478 0.96852 1.23007 0.95381 1.00822 0.99479 1.21467 0.96720 0.91029 0.86078 1.44509 1.09422 1.62685 1.14554 1.19047 1.10336 1.19023 0.87802 0.90516 1.24928 0.99214 0.98783 0.96960 1.69948 1.22320 1.41449 1.22330 0.86070 0.78391 0.79748 0.81714 1.20345 1.21725 1.21603 1.78985 0.95200 1.06852 1.29191 1.49038 1.07080 1.08864 1.45598 1.22057 0.79330 1.01682 0.93878 0.89977 0.89861 0.90490 0.79069 0.75544 0.90978 0.90718 0.92093 0.91807 0.92326 0.92241 0.95537 0.90936 0.93641 0.79840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.00 10.03 36.01 0.36 0.36 16 2 C -0.19 -0.71 5.87 -104.81 -0.61 -1.33 16 3 C 0.21 1.07 10.96 -17.07 -0.19 0.88 16 4 N -0.44 -4.62 10.48 -13.79 -0.14 -4.77 16 5 C 0.44 5.86 8.99 -323.04 -2.90 2.95 16 6 N -0.50 -7.80 10.89 -12.24 -0.13 -7.93 16 7 C 0.25 4.14 7.92 -156.79 -1.24 2.90 16 8 C 0.60 11.05 7.84 -12.20 -0.10 10.95 16 9 O -0.51 -10.97 17.07 5.34 0.09 -10.88 16 10 N -0.69 -11.79 5.36 -61.16 -0.33 -12.12 16 11 C 0.11 2.13 5.10 -4.05 -0.02 2.11 16 12 C 0.15 3.07 3.19 -66.95 -0.21 2.86 16 13 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 14 C -0.13 -2.22 6.20 -24.89 -0.15 -2.38 16 15 C -0.15 -2.78 7.09 -24.58 -0.17 -2.95 16 16 C 0.17 4.14 5.41 -2.53 -0.01 4.12 16 17 N -0.59 -14.72 3.13 -162.57 -0.51 -15.23 16 18 C -0.23 -6.44 9.72 -15.06 -0.15 -6.59 16 19 H 0.08 2.07 7.83 -52.48 -0.41 1.66 16 20 C 0.00 -0.04 5.47 -17.43 -0.10 -0.14 16 21 N -0.91 -26.79 10.58 55.49 0.59 -26.20 16 22 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 26 N -0.27 -4.26 12.78 32.02 0.41 -3.85 16 27 N -0.33 -3.95 3.91 -13.80 -0.05 -4.00 16 28 C 0.17 1.11 10.97 -16.54 -0.18 0.93 16 29 H 0.08 -0.05 8.14 -51.93 -0.42 -0.47 16 30 H 0.08 -0.11 8.10 -51.93 -0.42 -0.53 16 31 H 0.08 -0.04 8.09 -51.93 -0.42 -0.46 16 32 H 0.19 0.10 8.06 -52.49 -0.42 -0.33 16 33 H 0.41 6.19 8.07 -40.82 -0.33 5.86 16 34 H 0.07 1.56 8.03 -51.93 -0.42 1.14 16 35 H 0.07 1.64 7.86 -51.93 -0.41 1.24 16 36 H 0.06 0.90 8.14 -51.94 -0.42 0.48 16 37 H 0.06 1.10 7.78 -51.93 -0.40 0.70 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 40 H 0.03 0.69 8.06 -51.93 -0.42 0.28 16 41 H 0.07 1.94 6.94 -51.93 -0.36 1.57 16 42 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 43 H 0.18 0.65 8.06 -52.48 -0.42 0.22 16 LS Contribution 365.69 15.07 5.51 5.51 Total: -1.00 -36.45 365.69 -10.96 -47.41 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -5.68 Total: 0.07 kcal Atomic # 6 Polarization: 20.37 SS G_CDS: -5.68 Total: 14.68 kcal Atomic # 7 Polarization: -73.92 SS G_CDS: -0.17 Total: -74.09 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: 0.09 Total: -10.88 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -36.45 -10.96 -47.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027957888.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.001 kcal (2) G-P(sol) polarization free energy of solvation -36.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds