Wall clock time and date at job start Tue Mar 31 2020 04:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35676 * 120.48256 * 2 1 4 4 C 1.40175 * 119.27412 * 179.97438 * 3 2 1 5 5 N 1.31260 * 120.35328 * 0.02562 * 4 3 2 6 6 C 1.33991 * 120.88055 * 359.97438 * 5 4 3 7 7 N 1.32495 * 132.34059 * 179.97438 * 6 5 4 8 8 C 1.33458 * 109.75398 * 180.02562 * 7 6 5 9 9 C 1.48136 * 125.32411 * 179.97438 * 8 7 6 10 10 O 1.21517 * 120.00137 * 180.02562 * 9 8 7 11 11 N 1.34770 * 119.99804 * 0.02562 * 9 8 7 12 12 C 1.46508 * 120.00142 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.47067 * 173.73882 * 12 11 9 14 14 H 1.09003 * 109.87672 * 57.77316 * 13 12 11 15 15 C 1.54322 * 109.88169 * 178.95233 * 13 12 11 16 16 C 1.55155 * 102.94725 * 141.60917 * 15 13 12 17 17 C 1.54912 * 101.57900 * 324.49887 * 16 15 13 18 18 N 1.47027 * 109.88309 * 296.75652 * 13 12 11 19 19 C 1.36939 * 125.64684 * 61.68042 * 18 13 12 20 20 H 1.07997 * 119.99768 * 323.00644 * 19 18 13 21 21 C 1.38811 * 119.99905 * 143.00858 * 19 18 13 22 22 N 1.31620 * 120.00167 * 164.80241 * 21 19 18 23 23 Si 1.86800 * 119.99997 * 344.79223 * 21 19 18 24 24 H 1.48506 * 109.46798 * 92.99260 * 23 21 19 25 25 H 1.48500 * 109.47211 * 212.98929 * 23 21 19 26 26 H 1.48500 * 109.47173 * 332.99583 * 23 21 19 27 27 N 1.31984 * 109.35610 * 0.02562 * 8 7 6 28 28 N 1.36165 * 120.48491 * 179.97438 * 2 1 3 29 29 H 1.09005 * 109.47190 * 270.02120 * 1 2 3 30 30 H 1.08998 * 109.47119 * 30.02291 * 1 2 3 31 31 H 1.09001 * 109.47144 * 150.02562 * 1 2 3 32 32 H 1.07996 * 120.36651 * 359.97438 * 3 2 1 33 33 H 1.08001 * 119.82391 * 180.02562 * 4 3 2 34 34 H 0.97006 * 120.00566 * 0.02562 * 11 9 8 35 35 H 1.09000 * 109.46451 * 293.73473 * 12 11 9 36 36 H 1.08992 * 109.46933 * 53.73492 * 12 11 9 37 37 H 1.09005 * 110.71871 * 259.96874 * 15 13 12 38 38 H 1.08996 * 110.71852 * 23.24180 * 15 13 12 39 39 H 1.09000 * 111.00671 * 206.42670 * 16 15 13 40 40 H 1.09001 * 111.00690 * 82.56920 * 16 15 13 41 41 H 1.09006 * 110.36897 * 278.17070 * 17 16 15 42 42 H 1.08997 * 110.46490 * 155.89730 * 17 16 15 43 43 H 0.96994 * 119.99862 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.1692 0.0000 4 6 3.5967 1.1397 0.0005 5 7 4.2360 -0.0067 0.0005 6 6 3.5665 -1.1674 0.0005 7 7 3.9690 -2.4298 0.0001 8 6 2.9094 -3.2411 -0.0002 9 6 2.9640 -4.7214 -0.0013 10 8 1.9348 -5.3675 -0.0020 11 7 4.1553 -5.3517 -0.0015 12 6 4.2094 -6.8158 -0.0031 13 6 5.6612 -7.2723 -0.1604 14 1 6.2690 -6.8585 0.6444 15 6 5.7322 -8.8137 -0.1369 16 6 6.8173 -9.1279 -1.2004 17 6 6.5533 -8.0203 -2.2507 18 7 6.1861 -6.8309 -1.4609 19 6 6.3135 -5.5304 -1.8704 20 1 5.5658 -4.8017 -1.5943 21 6 7.4037 -5.1488 -2.6402 22 7 7.3867 -3.9995 -3.2814 23 14 8.8952 -6.2665 -2.7662 24 1 8.7573 -7.1436 -3.9566 25 1 10.1225 -5.4410 -2.8991 26 1 8.9914 -7.1033 -1.5432 27 7 1.8050 -2.5183 -0.0006 28 7 2.1978 -1.1734 0.0005 29 1 -0.3634 0.0004 1.0277 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3633 -0.8902 -0.5134 32 1 1.6692 2.1124 -0.0004 33 1 4.1535 2.0651 0.0010 34 1 4.9769 -4.8361 -0.0006 35 1 3.8090 -7.1951 0.9370 36 1 3.6157 -7.2004 -0.8324 37 1 6.0406 -9.1706 0.8458 38 1 4.7744 -9.2482 -0.4231 39 1 6.6676 -10.1181 -1.6307 40 1 7.8176 -9.0347 -0.7774 41 1 5.7320 -8.3080 -2.9073 42 1 7.4535 -7.8255 -2.8337 43 1 8.1483 -3.7330 -3.8196 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028302554.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:45 Heat of formation + Delta-G solvation = 142.104172 kcal Electronic energy + Delta-G solvation = -28171.384177 eV Core-core repulsion = 24255.726912 eV Total energy + Delta-G solvation = -3915.657265 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.94361 -39.60800 -38.59717 -37.72760 -35.37946 -34.13160 -32.58461 -31.94715 -30.96237 -29.92883 -29.50035 -28.75988 -25.94056 -24.53136 -24.24711 -23.33142 -21.92003 -20.86158 -19.95677 -19.57790 -18.63848 -18.15460 -17.31380 -16.80762 -16.35089 -16.16854 -15.69484 -15.33575 -14.87186 -14.47318 -14.38764 -13.89510 -13.64467 -13.59428 -13.36413 -13.05415 -12.77230 -12.73112 -12.69870 -12.47580 -12.29918 -11.95301 -11.59352 -11.28945 -11.23880 -10.89819 -10.72375 -10.46048 -10.23859 -10.15960 -10.11799 -9.89855 -9.79703 -9.74280 -9.48634 -8.82743 -8.57806 -8.42453 -6.78158 -5.92444 -3.41407 0.22080 0.54298 1.65835 1.91852 3.04672 3.16427 3.34427 3.35594 3.48634 3.53571 3.67222 3.87547 4.09697 4.49475 4.55409 4.70311 4.90298 4.93926 4.99469 5.00324 5.04574 5.17346 5.35265 5.42373 5.50256 5.54500 5.71831 5.82745 5.94339 5.95247 6.00953 6.07897 6.11172 6.13511 6.27321 6.32600 6.40373 6.60722 6.83887 6.88192 6.91967 7.31605 7.69535 7.94249 8.06828 8.38689 8.53042 8.87283 9.69438 10.26197 11.21383 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.015198 B = 0.003633 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.906487 B = 7705.935803 C = 9181.602139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.201 3.799 3 C -0.230 4.230 4 C 0.206 3.794 5 N -0.445 5.445 6 C 0.445 3.555 7 N -0.479 5.479 8 C 0.249 3.751 9 C 0.604 3.396 10 O -0.529 6.529 11 N -0.675 5.675 12 C 0.115 3.885 13 C 0.142 3.858 14 H 0.051 0.949 15 C -0.120 4.120 16 C -0.136 4.136 17 C 0.117 3.883 18 N -0.601 5.601 19 C -0.261 4.261 20 H 0.095 0.905 21 C 0.038 3.962 22 N -0.898 5.898 23 Si 0.892 3.108 24 H -0.289 1.289 25 H -0.305 1.305 26 H -0.268 1.268 27 N -0.276 5.276 28 N -0.329 5.329 29 H 0.095 0.905 30 H 0.097 0.903 31 H 0.090 0.910 32 H 0.173 0.827 33 H 0.191 0.809 34 H 0.426 0.574 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.031 0.969 42 H 0.041 0.959 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.607 8.324 8.732 16.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.083 3.917 3 C -0.255 4.255 4 C 0.019 3.981 5 N -0.159 5.159 6 C 0.085 3.915 7 N -0.211 5.211 8 C -0.035 4.035 9 C 0.383 3.617 10 O -0.403 6.403 11 N -0.329 5.329 12 C -0.011 4.011 13 C 0.034 3.966 14 H 0.069 0.931 15 C -0.158 4.158 16 C -0.174 4.174 17 C -0.008 4.008 18 N -0.328 5.328 19 C -0.388 4.388 20 H 0.112 0.888 21 C -0.163 4.163 22 N -0.538 5.538 23 Si 0.723 3.277 24 H -0.217 1.217 25 H -0.233 1.233 26 H -0.193 1.193 27 N -0.110 5.110 28 N -0.111 5.111 29 H 0.114 0.886 30 H 0.115 0.885 31 H 0.109 0.891 32 H 0.190 0.810 33 H 0.208 0.792 34 H 0.268 0.732 35 H 0.078 0.922 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.049 0.951 42 H 0.059 0.941 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.603 7.155 8.591 15.408 hybrid contribution 0.552 0.232 -0.418 0.730 sum -10.051 7.387 8.173 14.912 Atomic orbital electron populations 1.21065 0.86430 1.05592 1.04841 1.20897 0.96637 0.82056 0.92152 1.21789 0.95797 0.97762 1.10197 1.23613 0.91665 0.95852 0.86965 1.68095 1.36146 0.95025 1.16632 1.22765 0.78147 0.93721 0.96907 1.70999 1.27822 0.96257 1.26045 1.24330 0.85736 0.97064 0.96390 1.16329 0.84958 0.81813 0.78552 1.90783 1.33868 1.64852 1.50842 1.46075 1.08231 1.08545 1.70077 1.22128 0.99794 0.78275 1.00868 1.21300 0.91641 0.92849 0.90768 0.93091 1.22476 0.99245 0.95064 0.99039 1.22782 0.98855 0.98448 0.97330 1.21906 0.97837 0.87392 0.93633 1.44709 1.75788 1.01859 1.10411 1.18728 1.04996 0.83315 1.31804 0.88803 1.25461 0.97248 0.95472 0.98136 1.69809 1.31000 1.22227 1.30810 0.86694 0.83132 0.79745 0.78092 1.21679 1.23299 1.19325 1.78822 1.19423 0.82893 1.29836 1.49114 1.09266 1.06297 1.46469 0.88640 0.88457 0.89074 0.80975 0.79198 0.73174 0.92172 0.91091 0.91308 0.91185 0.91551 0.91548 0.95130 0.94117 0.92682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.83 10.13 36.01 0.36 -0.46 16 2 C 0.20 2.09 6.86 -81.59 -0.56 1.53 16 3 C -0.23 -1.62 9.72 -39.77 -0.39 -2.01 16 4 C 0.21 1.87 11.27 -17.07 -0.19 1.67 16 5 N -0.44 -6.92 10.48 -13.79 -0.14 -7.06 16 6 C 0.45 8.23 8.98 -323.04 -2.90 5.33 16 7 N -0.48 -10.30 10.89 -12.23 -0.13 -10.43 16 8 C 0.25 5.21 7.92 -156.80 -1.24 3.97 16 9 C 0.60 12.95 7.84 -12.20 -0.10 12.85 16 10 O -0.53 -11.99 17.06 5.35 0.09 -11.90 16 11 N -0.68 -14.01 4.35 -61.16 -0.27 -14.27 16 12 C 0.11 2.14 5.17 -4.04 -0.02 2.12 16 13 C 0.14 2.70 3.32 -66.95 -0.22 2.48 16 14 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 15 C -0.12 -1.84 6.48 -24.90 -0.16 -2.00 16 16 C -0.14 -2.28 7.09 -24.58 -0.17 -2.46 16 17 C 0.12 2.49 6.18 -2.53 -0.02 2.48 16 18 N -0.60 -14.10 2.67 -162.57 -0.43 -14.53 16 19 C -0.26 -7.20 9.48 -15.06 -0.14 -7.34 16 20 H 0.09 2.75 5.49 -52.49 -0.29 2.46 16 21 C 0.04 1.11 5.47 -17.43 -0.10 1.01 16 22 N -0.90 -27.78 13.97 55.49 0.78 -27.01 16 23 Si 0.89 22.66 24.77 -169.99 -4.21 18.45 16 24 H -0.29 -7.23 6.82 56.52 0.39 -6.85 16 25 H -0.30 -7.90 7.11 56.52 0.40 -7.50 16 26 H -0.27 -6.55 6.96 56.52 0.39 -6.16 16 27 N -0.28 -5.26 12.67 32.02 0.41 -4.86 16 28 N -0.33 -5.29 3.91 -10.07 -0.04 -5.33 16 29 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.10 0.33 8.09 -51.93 -0.42 -0.09 16 31 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.17 0.36 8.06 -52.49 -0.42 -0.06 16 33 H 0.19 0.80 8.06 -52.49 -0.42 0.37 16 34 H 0.43 9.47 5.89 -40.82 -0.24 9.23 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.07 1.41 8.12 -51.93 -0.42 0.99 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.07 0.98 7.85 -51.93 -0.41 0.58 16 39 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.07 1.14 8.09 -51.93 -0.42 0.72 16 41 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.04 0.95 3.13 -51.93 -0.16 0.79 16 43 H 0.26 7.75 8.31 -40.82 -0.34 7.42 16 LS Contribution 355.63 15.07 5.36 5.36 Total: -1.00 -37.92 355.63 -9.77 -47.69 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -5.33 Total: 4.72 kcal Atomic # 6 Polarization: 25.03 SS G_CDS: -5.85 Total: 19.18 kcal Atomic # 7 Polarization: -83.66 SS G_CDS: 0.16 Total: -83.50 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: 0.09 Total: -11.90 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -4.21 Total: 18.45 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -37.92 -9.77 -47.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028302554.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.790 kcal (2) G-P(sol) polarization free energy of solvation -37.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 151.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds