Wall clock time and date at job start Tue Mar 31 2020 06:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86795 * 120.00131 * 2 1 4 4 H 1.48501 * 109.47015 * 85.01529 * 3 2 1 5 5 H 1.48503 * 109.47138 * 205.00814 * 3 2 1 6 6 H 1.48501 * 109.47337 * 325.01276 * 3 2 1 7 7 C 1.38820 * 119.99802 * 179.72099 * 2 1 3 8 8 H 1.08000 * 119.99603 * 187.32426 * 7 2 1 9 9 N 1.36932 * 119.99684 * 7.33337 * 7 2 1 10 10 C 1.47019 * 125.65217 * 5.85283 * 9 7 2 11 11 C 1.54325 * 107.27013 * 181.02773 * 10 9 7 12 12 C 1.55153 * 102.94611 * 22.19195 * 11 10 9 13 13 H 1.09005 * 111.00179 * 82.60882 * 12 11 10 14 14 C 1.53000 * 111.00726 * 206.42580 * 12 11 10 15 15 N 1.46501 * 109.47048 * 185.00004 * 14 12 11 16 16 C 1.34773 * 119.99714 * 179.97438 * 15 14 12 17 17 O 1.21285 * 120.00204 * 0.02562 * 16 15 14 18 18 C 1.50706 * 119.99936 * 179.97438 * 16 15 14 19 19 H 1.09003 * 109.63460 * 300.00433 * 18 16 15 20 20 C 1.53308 * 109.63574 * 179.59844 * 18 16 15 21 21 C 1.52722 * 108.56260 * 170.72549 * 20 18 16 22 22 C 1.50441 * 110.59163 * 50.73372 * 21 20 18 23 23 N 1.32895 * 118.53349 * 162.72125 * 22 21 20 24 24 C 1.31595 * 121.06371 * 179.44856 * 23 22 21 25 25 N 1.31815 * 121.67165 * 0.02562 * 24 23 22 26 26 C 1.32194 * 120.63924 * 0.11935 * 25 24 23 27 27 C 1.37772 * 122.58158 * 342.37746 * 22 21 20 28 28 C 1.50334 * 122.79615 * 0.69137 * 27 22 21 29 29 C 1.47433 * 125.64393 * 185.55353 * 9 7 2 30 30 H 0.97001 * 119.99909 * 359.97438 * 1 2 3 31 31 H 1.09006 * 109.88333 * 300.44155 * 10 9 7 32 32 H 1.08993 * 109.88049 * 61.45568 * 10 9 7 33 33 H 1.09003 * 110.71922 * 140.55547 * 11 10 9 34 34 H 1.09002 * 110.71993 * 263.82612 * 11 10 9 35 35 H 1.09005 * 109.46971 * 304.99499 * 14 12 11 36 36 H 1.08996 * 109.47103 * 64.99597 * 14 12 11 37 37 H 0.96998 * 120.00024 * 0.02562 * 15 14 12 38 38 H 1.08997 * 109.63191 * 290.23567 * 20 18 16 39 39 H 1.09000 * 109.62662 * 50.81555 * 20 18 16 40 40 H 1.08999 * 109.12518 * 290.45589 * 21 20 18 41 41 H 1.09005 * 109.18446 * 171.04249 * 21 20 18 42 42 H 1.08001 * 119.16892 * 180.02562 * 24 23 22 43 43 H 1.08003 * 120.36065 * 179.97438 * 26 25 24 44 44 H 1.08999 * 109.30953 * 222.10536 * 28 27 22 45 45 H 1.09000 * 109.14928 * 102.60240 * 28 27 22 46 46 H 1.09005 * 110.36270 * 274.74201 * 29 9 7 47 47 H 1.08997 * 110.36806 * 37.06239 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1072 1.3948 5 1 3.5965 1.4119 -0.5919 6 1 1.5044 2.6199 -0.8028 7 6 2.0102 -1.2022 0.0059 8 1 3.0836 -1.2054 0.1251 9 7 1.3339 -2.3839 -0.1398 10 6 -0.1009 -2.5199 -0.4305 11 6 -0.4174 -4.0295 -0.4790 12 6 0.7388 -4.6538 0.3459 13 1 0.5282 -4.6031 1.4142 14 6 1.0067 -6.0959 -0.0894 15 7 2.0187 -6.6906 0.7872 16 6 2.4155 -7.9637 0.5916 17 8 1.9351 -8.6168 -0.3104 18 6 3.4570 -8.5753 1.4929 19 1 4.3809 -8.0005 1.4278 20 6 3.7205 -10.0242 1.0667 21 6 4.9328 -10.5444 1.8361 22 6 4.7723 -10.2915 3.3103 23 7 5.5396 -10.9690 4.1579 24 6 5.4484 -10.7792 5.4569 25 7 4.5971 -9.9146 5.9719 26 6 3.7998 -9.2069 5.1902 27 6 3.8677 -9.3820 3.8129 28 6 2.9522 -8.5743 2.9355 29 6 1.9251 -3.7306 -0.0371 30 1 -0.4850 0.8401 0.0004 31 1 -0.6854 -2.0437 0.3567 32 1 -0.3295 -2.0597 -1.3917 33 1 -1.3802 -4.2368 -0.0118 34 1 -0.3994 -4.3945 -1.5059 35 1 0.0842 -6.6728 -0.0229 36 1 1.3669 -6.1040 -1.1181 37 1 2.4026 -6.1684 1.5088 38 1 2.8512 -10.6386 1.3008 39 1 3.9202 -10.0602 -0.0043 40 1 5.8280 -10.0357 1.4784 41 1 5.0340 -11.6159 1.6632 42 1 6.0872 -11.3462 6.1179 43 1 3.1037 -8.5000 5.6170 44 1 2.9129 -7.5489 3.3029 45 1 1.9524 -9.0072 2.9678 46 1 2.3499 -4.0323 -0.9945 47 1 2.6882 -3.7515 0.7409 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028590796.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:28 Heat of formation + Delta-G solvation = 18.505814 kcal Electronic energy + Delta-G solvation = -27557.646707 eV Core-core repulsion = 23740.170159 eV Total energy + Delta-G solvation = -3817.476548 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.75859 -40.04067 -37.85173 -36.90847 -34.77675 -34.42190 -32.57705 -31.82893 -30.90020 -29.70975 -28.28164 -26.00027 -25.39001 -24.57080 -23.41321 -23.38444 -21.37305 -20.32840 -20.03939 -19.54591 -18.17565 -17.36556 -17.13348 -16.74900 -16.13273 -15.85742 -15.42584 -14.85443 -14.66325 -14.61537 -14.32082 -14.24766 -14.12777 -13.77836 -13.61966 -13.34229 -13.07326 -12.52033 -12.42469 -12.24099 -12.01685 -11.80627 -11.56067 -11.40597 -11.32214 -11.18978 -10.93875 -10.82439 -10.75606 -10.44205 -10.18953 -10.07272 -9.90728 -9.74267 -9.70012 -9.61033 -9.54893 -9.03642 -8.65766 -6.86231 -5.73736 -3.10201 0.51364 0.66897 2.52288 3.09666 3.36288 3.36663 3.42562 3.44506 3.61030 3.83183 4.02886 4.11619 4.21508 4.39502 4.46059 4.60567 4.83398 4.87457 4.96245 5.00932 5.10166 5.13066 5.17324 5.19073 5.36425 5.39023 5.45086 5.49235 5.61774 5.65349 5.72462 5.83926 5.86039 5.99033 6.01643 6.05273 6.29858 6.36972 6.45298 6.48945 6.60682 6.63650 6.86051 7.45049 7.45920 7.61848 7.71414 7.79244 8.14472 8.23650 9.17327 9.78674 10.44546 11.35578 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.016188 B = 0.002285 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.222726 B =12252.634548 C =13215.658753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.008 4.008 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.281 1.281 6 H -0.290 1.290 7 C -0.230 4.230 8 H 0.077 0.923 9 N -0.605 5.605 10 C 0.170 3.830 11 C -0.133 4.133 12 C -0.117 4.117 13 H 0.080 0.920 14 C 0.131 3.869 15 N -0.723 5.723 16 C 0.517 3.483 17 O -0.541 6.541 18 C -0.110 4.110 19 H 0.104 0.896 20 C -0.099 4.099 21 C -0.074 4.074 22 C 0.182 3.818 23 N -0.522 5.522 24 C 0.289 3.711 25 N -0.522 5.522 26 C 0.153 3.847 27 C -0.178 4.178 28 C -0.064 4.064 29 C 0.142 3.858 30 H 0.252 0.748 31 H 0.063 0.937 32 H 0.029 0.971 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.402 0.598 38 H 0.074 0.926 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.195 0.805 43 H 0.170 0.830 44 H 0.090 0.910 45 H 0.090 0.910 46 H 0.019 0.981 47 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.727 -21.476 7.449 23.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.205 4.205 3 Si 0.741 3.259 4 H -0.216 1.216 5 H -0.207 1.207 6 H -0.216 1.216 7 C -0.358 4.358 8 H 0.094 0.906 9 N -0.331 5.331 10 C 0.045 3.955 11 C -0.172 4.172 12 C -0.137 4.137 13 H 0.098 0.902 14 C 0.008 3.992 15 N -0.374 5.374 16 C 0.303 3.697 17 O -0.418 6.418 18 C -0.131 4.131 19 H 0.122 0.878 20 C -0.137 4.137 21 C -0.112 4.112 22 C 0.038 3.962 23 N -0.236 5.236 24 C 0.001 3.999 25 N -0.236 5.236 26 C -0.014 4.014 27 C -0.182 4.182 28 C -0.103 4.103 29 C 0.016 3.984 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.047 0.953 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.236 0.764 38 H 0.093 0.907 39 H 0.108 0.892 40 H 0.112 0.888 41 H 0.114 0.886 42 H 0.212 0.788 43 H 0.187 0.813 44 H 0.108 0.892 45 H 0.108 0.892 46 H 0.037 0.963 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 6.921 -22.227 7.402 24.428 hybrid contribution 0.124 1.737 -0.038 1.742 sum 7.045 -20.489 7.364 22.884 Atomic orbital electron populations 1.69952 1.04941 1.25035 1.56719 1.24815 0.95670 0.97742 1.02233 0.86123 0.78702 0.83577 0.77494 1.21628 1.20657 1.21613 1.19036 0.90870 0.82656 1.43278 0.90557 1.44476 1.05223 0.99879 1.83542 1.21234 0.85451 0.88572 1.00222 1.22824 0.96567 0.99215 0.98635 1.22658 0.98641 0.91969 1.00429 0.90165 1.21425 0.90743 0.93099 0.93965 1.46121 1.42975 1.13298 1.34965 1.20379 0.82734 0.81720 0.84902 1.90708 1.56628 1.61502 1.32951 1.21386 0.98994 0.98571 0.94184 0.87830 1.21410 0.97692 0.93496 1.01106 1.20472 0.99838 1.03537 0.87348 1.21392 0.88968 0.89059 0.96823 1.68405 1.24595 1.25583 1.05002 1.24917 0.93321 0.92164 0.89492 1.68437 1.06497 1.07611 1.41028 1.23334 0.94142 0.94573 0.89401 1.21093 1.00331 1.00287 0.96538 1.20310 0.98086 1.00115 0.91777 1.21642 0.93422 0.86127 0.97259 0.93751 0.91887 0.95315 0.91926 0.92307 0.91644 0.91317 0.76404 0.90680 0.89155 0.88846 0.88647 0.78812 0.81278 0.89180 0.89207 0.96299 0.94638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.61 10.45 55.49 0.58 -26.03 16 2 C -0.01 -0.23 5.45 -17.43 -0.09 -0.32 16 3 Si 0.91 21.77 29.56 -169.99 -5.02 16.74 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.23 -6.28 10.26 -15.06 -0.15 -6.44 16 8 H 0.08 2.01 7.84 -52.49 -0.41 1.60 16 9 N -0.61 -14.96 3.39 -169.93 -0.58 -15.53 16 10 C 0.17 3.99 5.45 -3.07 -0.02 3.97 16 11 C -0.13 -2.33 6.42 -24.90 -0.16 -2.49 16 12 C -0.12 -1.81 3.06 -88.35 -0.27 -2.08 16 13 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 14 C 0.13 1.72 5.13 -4.04 -0.02 1.70 16 15 N -0.72 -7.81 5.41 -60.29 -0.33 -8.13 16 16 C 0.52 5.75 7.14 -10.98 -0.08 5.67 16 17 O -0.54 -8.07 15.85 5.55 0.09 -7.98 16 18 C -0.11 -0.85 2.54 -91.69 -0.23 -1.09 16 19 H 0.10 0.71 8.11 -51.93 -0.42 0.28 16 20 C -0.10 -0.76 4.71 -26.71 -0.13 -0.89 16 21 C -0.07 -0.52 5.95 -28.15 -0.17 -0.69 16 22 C 0.18 1.58 6.63 -82.43 -0.55 1.03 16 23 N -0.52 -5.02 10.32 -11.00 -0.11 -5.14 16 24 C 0.29 2.52 12.29 -92.31 -1.13 1.39 16 25 N -0.52 -4.93 10.44 -14.55 -0.15 -5.08 16 26 C 0.15 1.22 10.93 -17.11 -0.19 1.03 16 27 C -0.18 -1.39 5.74 -104.68 -0.60 -1.99 16 28 C -0.06 -0.42 4.89 -28.14 -0.14 -0.56 16 29 C 0.14 2.71 6.65 -2.41 -0.02 2.70 16 30 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 31 H 0.06 1.65 6.88 -51.93 -0.36 1.29 16 32 H 0.03 0.75 7.97 -51.93 -0.41 0.33 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.06 0.97 8.04 -51.93 -0.42 0.55 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.07 0.99 7.96 -51.93 -0.41 0.58 16 37 H 0.40 3.59 8.12 -40.82 -0.33 3.26 16 38 H 0.07 0.63 8.10 -51.93 -0.42 0.20 16 39 H 0.09 0.75 7.81 -51.93 -0.41 0.34 16 40 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.20 1.09 8.06 -52.49 -0.42 0.67 16 43 H 0.17 0.90 8.06 -52.48 -0.42 0.48 16 44 H 0.09 0.46 7.85 -51.93 -0.41 0.05 16 45 H 0.09 0.60 8.11 -51.93 -0.42 0.18 16 46 H 0.02 0.37 7.91 -51.93 -0.41 -0.04 16 47 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 377.97 15.07 5.70 5.70 Total: -1.00 -33.71 377.97 -11.12 -44.83 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -7.35 Total: -0.32 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: -3.94 Total: 0.95 kcal Atomic # 7 Polarization: -59.33 SS G_CDS: -0.59 Total: -59.92 kcal Atomic # 8 Polarization: -8.07 SS G_CDS: 0.09 Total: -7.98 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.71 -11.12 -44.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028590796.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.334 kcal (2) G-P(sol) polarization free energy of solvation -33.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds