Wall clock time and date at job start Tue Mar 31 2020 06:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86795 * 120.00131 * 2 1 4 4 H 1.48501 * 109.47015 * 85.01529 * 3 2 1 5 5 H 1.48503 * 109.47138 * 205.00814 * 3 2 1 6 6 H 1.48501 * 109.47337 * 325.01276 * 3 2 1 7 7 C 1.38820 * 119.99802 * 179.72099 * 2 1 3 8 8 H 1.08000 * 119.99603 * 187.32426 * 7 2 1 9 9 N 1.36932 * 119.99684 * 7.33337 * 7 2 1 10 10 C 1.47019 * 125.65217 * 5.85283 * 9 7 2 11 11 C 1.54325 * 107.27013 * 181.02773 * 10 9 7 12 12 C 1.55153 * 102.94611 * 22.19195 * 11 10 9 13 13 H 1.09005 * 111.00179 * 82.60882 * 12 11 10 14 14 C 1.53000 * 111.00726 * 206.42580 * 12 11 10 15 15 N 1.46501 * 109.47048 * 185.00004 * 14 12 11 16 16 C 1.34773 * 119.99714 * 179.97438 * 15 14 12 17 17 O 1.21285 * 120.00204 * 0.02562 * 16 15 14 18 18 C 1.50706 * 119.99936 * 179.97438 * 16 15 14 19 19 H 1.09003 * 109.63460 * 300.00433 * 18 16 15 20 20 C 1.53308 * 109.63574 * 179.59844 * 18 16 15 21 21 C 1.52722 * 108.56260 * 170.72549 * 20 18 16 22 22 C 1.50441 * 110.59163 * 50.73372 * 21 20 18 23 23 N 1.32895 * 118.53349 * 162.72125 * 22 21 20 24 24 C 1.31595 * 121.06371 * 179.44856 * 23 22 21 25 25 N 1.31815 * 121.67165 * 0.02562 * 24 23 22 26 26 C 1.32194 * 120.63924 * 0.11935 * 25 24 23 27 27 C 1.37772 * 122.58158 * 342.37746 * 22 21 20 28 28 C 1.50334 * 122.79615 * 0.69137 * 27 22 21 29 29 C 1.47433 * 125.64393 * 185.55353 * 9 7 2 30 30 H 0.97001 * 119.99909 * 359.97438 * 1 2 3 31 31 H 1.09006 * 109.88333 * 300.44155 * 10 9 7 32 32 H 1.08993 * 109.88049 * 61.45568 * 10 9 7 33 33 H 1.09003 * 110.71922 * 140.55547 * 11 10 9 34 34 H 1.09002 * 110.71993 * 263.82612 * 11 10 9 35 35 H 1.09005 * 109.46971 * 304.99499 * 14 12 11 36 36 H 1.08996 * 109.47103 * 64.99597 * 14 12 11 37 37 H 0.96998 * 120.00024 * 0.02562 * 15 14 12 38 38 H 1.08997 * 109.63191 * 290.23567 * 20 18 16 39 39 H 1.09000 * 109.62662 * 50.81555 * 20 18 16 40 40 H 1.08999 * 109.12518 * 290.45589 * 21 20 18 41 41 H 1.09005 * 109.18446 * 171.04249 * 21 20 18 42 42 H 1.08001 * 119.16892 * 180.02562 * 24 23 22 43 43 H 1.08003 * 120.36065 * 179.97438 * 26 25 24 44 44 H 1.08999 * 109.30953 * 222.10536 * 28 27 22 45 45 H 1.09000 * 109.14928 * 102.60240 * 28 27 22 46 46 H 1.09005 * 110.36270 * 274.74201 * 29 9 7 47 47 H 1.08997 * 110.36806 * 37.06239 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1072 1.3948 5 1 3.5965 1.4119 -0.5919 6 1 1.5044 2.6199 -0.8028 7 6 2.0102 -1.2022 0.0059 8 1 3.0836 -1.2054 0.1251 9 7 1.3339 -2.3839 -0.1398 10 6 -0.1009 -2.5199 -0.4305 11 6 -0.4174 -4.0295 -0.4790 12 6 0.7388 -4.6538 0.3459 13 1 0.5282 -4.6031 1.4142 14 6 1.0067 -6.0959 -0.0894 15 7 2.0187 -6.6906 0.7872 16 6 2.4155 -7.9637 0.5916 17 8 1.9351 -8.6168 -0.3104 18 6 3.4570 -8.5753 1.4929 19 1 4.3809 -8.0005 1.4278 20 6 3.7205 -10.0242 1.0667 21 6 4.9328 -10.5444 1.8361 22 6 4.7723 -10.2915 3.3103 23 7 5.5396 -10.9690 4.1579 24 6 5.4484 -10.7792 5.4569 25 7 4.5971 -9.9146 5.9719 26 6 3.7998 -9.2069 5.1902 27 6 3.8677 -9.3820 3.8129 28 6 2.9522 -8.5743 2.9355 29 6 1.9251 -3.7306 -0.0371 30 1 -0.4850 0.8401 0.0004 31 1 -0.6854 -2.0437 0.3567 32 1 -0.3295 -2.0597 -1.3917 33 1 -1.3802 -4.2368 -0.0118 34 1 -0.3994 -4.3945 -1.5059 35 1 0.0842 -6.6728 -0.0229 36 1 1.3669 -6.1040 -1.1181 37 1 2.4026 -6.1684 1.5088 38 1 2.8512 -10.6386 1.3008 39 1 3.9202 -10.0602 -0.0043 40 1 5.8280 -10.0357 1.4784 41 1 5.0340 -11.6159 1.6632 42 1 6.0872 -11.3462 6.1179 43 1 3.1037 -8.5000 5.6170 44 1 2.9129 -7.5489 3.3029 45 1 1.9524 -9.0072 2.9678 46 1 2.3499 -4.0323 -0.9945 47 1 2.6882 -3.7515 0.7409 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028590796.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:27 Heat of formation + Delta-G solvation = -2.560351 kcal Electronic energy + Delta-G solvation = -27558.560204 eV Core-core repulsion = 23740.170159 eV Total energy + Delta-G solvation = -3818.390046 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.36713 -40.92990 -39.30545 -37.66891 -36.00975 -35.06821 -34.27492 -32.46004 -31.89974 -31.13976 -29.74937 -27.35478 -26.35293 -25.55310 -24.60026 -23.97894 -22.30752 -21.77102 -21.38440 -20.51597 -18.97802 -18.70181 -17.95659 -17.76139 -17.20982 -16.80587 -16.62022 -16.09840 -15.93434 -15.59403 -15.33648 -15.06499 -14.87318 -14.76933 -14.52284 -14.34046 -14.01841 -13.91752 -13.77852 -13.45108 -13.12217 -12.94528 -12.85475 -12.72550 -12.61364 -12.18318 -12.02015 -11.93960 -11.87105 -11.84190 -11.79398 -11.53317 -11.42158 -11.36922 -10.74650 -10.69305 -10.19448 -10.16388 -10.01190 -8.86981 -7.82361 -5.20470 -0.07597 0.06510 1.46383 1.47814 1.56912 1.66501 2.22061 2.50271 2.75777 3.04210 3.29013 3.33386 3.45914 3.49930 3.62975 3.65131 3.77539 3.85891 4.02100 4.06083 4.08185 4.26514 4.30369 4.38263 4.47612 4.49139 4.58484 4.66172 4.68647 4.74965 4.84155 4.86161 4.91448 4.96401 5.06983 5.10237 5.11646 5.13253 5.25801 5.39431 5.47500 5.48819 5.54037 5.64754 5.83230 6.01136 6.23558 6.60958 7.10917 7.11196 7.29060 7.79981 8.44178 9.25482 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.016188 B = 0.002285 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.222726 B =12252.634548 C =13215.658753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.068 4.068 3 Si 0.975 3.025 4 H -0.285 1.285 5 H -0.270 1.270 6 H -0.297 1.297 7 C -0.241 4.241 8 H 0.082 0.918 9 N -0.628 5.628 10 C 0.174 3.826 11 C -0.122 4.122 12 C -0.094 4.094 13 H 0.091 0.909 14 C 0.144 3.856 15 N -0.716 5.716 16 C 0.520 3.480 17 O -0.580 6.580 18 C -0.102 4.102 19 H 0.119 0.881 20 C -0.094 4.094 21 C -0.067 4.067 22 C 0.167 3.833 23 N -0.541 5.541 24 C 0.280 3.720 25 N -0.542 5.542 26 C 0.147 3.853 27 C -0.178 4.178 28 C -0.059 4.059 29 C 0.137 3.863 30 H 0.246 0.754 31 H 0.029 0.971 32 H -0.011 1.011 33 H 0.085 0.915 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.057 0.943 37 H 0.413 0.587 38 H 0.066 0.934 39 H 0.083 0.917 40 H 0.103 0.897 41 H 0.098 0.902 42 H 0.216 0.784 43 H 0.194 0.806 44 H 0.111 0.889 45 H 0.091 0.909 46 H 0.019 0.981 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.731 -22.422 8.421 25.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.261 4.261 3 Si 0.803 3.197 4 H -0.212 1.212 5 H -0.194 1.194 6 H -0.223 1.223 7 C -0.370 4.370 8 H 0.100 0.900 9 N -0.354 5.354 10 C 0.049 3.951 11 C -0.161 4.161 12 C -0.113 4.113 13 H 0.110 0.890 14 C 0.019 3.981 15 N -0.367 5.367 16 C 0.308 3.692 17 O -0.460 6.460 18 C -0.123 4.123 19 H 0.137 0.863 20 C -0.132 4.132 21 C -0.105 4.105 22 C 0.024 3.976 23 N -0.256 5.256 24 C -0.008 4.008 25 N -0.256 5.256 26 C -0.019 4.019 27 C -0.182 4.182 28 C -0.097 4.097 29 C 0.012 3.988 30 H 0.055 0.945 31 H 0.047 0.953 32 H 0.007 0.993 33 H 0.103 0.897 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.075 0.925 37 H 0.250 0.750 38 H 0.085 0.915 39 H 0.101 0.899 40 H 0.121 0.879 41 H 0.116 0.884 42 H 0.232 0.768 43 H 0.211 0.789 44 H 0.129 0.871 45 H 0.110 0.890 46 H 0.037 0.963 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 7.960 -23.197 8.393 25.921 hybrid contribution -0.164 1.996 -0.358 2.034 sum 7.796 -21.202 8.036 23.976 Atomic orbital electron populations 1.70174 1.06323 1.25169 1.58177 1.25644 0.96533 1.01035 1.02861 0.85113 0.77775 0.79400 0.77363 1.21163 1.19431 1.22329 1.19442 0.91454 0.84015 1.42064 0.89988 1.44804 1.05909 1.01330 1.83386 1.21023 0.84915 0.92336 0.96805 1.22693 0.98479 0.94739 1.00174 1.22454 0.95726 0.92473 1.00671 0.89025 1.21136 0.91758 0.91483 0.93678 1.46008 1.42432 1.13412 1.34850 1.20853 0.82567 0.81272 0.84548 1.90701 1.58097 1.62404 1.34770 1.21357 0.98423 0.98346 0.94152 0.86262 1.21335 0.97656 0.93491 1.00735 1.20431 0.99769 1.03802 0.86478 1.21693 0.89254 0.89306 0.97385 1.68430 1.25346 1.26281 1.05496 1.25382 0.93505 0.92243 0.89660 1.68487 1.07194 1.08292 1.41637 1.23784 0.94065 0.94555 0.89534 1.21177 1.00179 1.00100 0.96725 1.20312 0.97659 1.01169 0.90542 1.21841 0.95011 0.84274 0.97691 0.94482 0.95296 0.99260 0.89668 0.91202 0.90809 0.92452 0.74999 0.91514 0.89871 0.87917 0.88403 0.76761 0.78904 0.87068 0.89040 0.96304 0.93241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.57 10.45 21.65 0.23 -56.35 16 2 C -0.07 -3.80 5.45 84.86 0.46 -3.34 16 3 Si 0.98 45.11 29.56 68.60 2.03 47.14 16 4 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 5 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 6 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 7 C -0.24 -13.16 10.26 84.04 0.86 -12.30 16 8 H 0.08 4.26 7.84 -2.91 -0.02 4.24 16 9 N -0.63 -31.04 3.39 -691.53 -2.35 -33.39 16 10 C 0.17 8.34 5.45 86.73 0.47 8.81 16 11 C -0.12 -4.08 6.42 31.78 0.20 -3.87 16 12 C -0.09 -2.66 3.06 -9.33 -0.03 -2.69 16 13 H 0.09 2.46 8.14 -2.38 -0.02 2.44 16 14 C 0.14 3.36 5.13 86.38 0.44 3.81 16 15 N -0.72 -13.25 5.41 -463.05 -2.51 -15.76 16 16 C 0.52 10.30 7.14 87.66 0.63 10.92 16 17 O -0.58 -16.38 15.85 -3.05 -0.05 -16.43 16 18 C -0.10 -1.32 2.54 -11.49 -0.03 -1.35 16 19 H 0.12 1.23 8.11 -2.39 -0.02 1.21 16 20 C -0.09 -1.30 4.71 30.61 0.14 -1.15 16 21 C -0.07 -0.84 5.95 29.67 0.18 -0.66 16 22 C 0.17 2.64 6.63 42.21 0.28 2.92 16 23 N -0.54 -9.77 10.32 -188.72 -1.95 -11.71 16 24 C 0.28 4.55 12.29 180.94 2.22 6.77 16 25 N -0.54 -9.40 10.44 -199.93 -2.09 -11.49 16 26 C 0.15 2.02 10.93 84.82 0.93 2.95 16 27 C -0.18 -2.37 5.74 -19.90 -0.11 -2.49 16 28 C -0.06 -0.59 4.89 29.68 0.15 -0.45 16 29 C 0.14 4.99 6.65 86.93 0.58 5.57 16 30 H 0.25 14.28 8.31 -92.71 -0.77 13.50 16 31 H 0.03 1.57 6.88 -2.38 -0.02 1.55 16 32 H -0.01 -0.59 7.97 -2.39 -0.02 -0.61 16 33 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 34 H 0.07 2.19 8.04 -2.39 -0.02 2.17 16 35 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 36 H 0.06 1.52 7.96 -2.39 -0.02 1.50 16 37 H 0.41 5.83 8.12 -92.71 -0.75 5.08 16 38 H 0.07 1.04 8.10 -2.39 -0.02 1.02 16 39 H 0.08 1.29 7.81 -2.39 -0.02 1.27 16 40 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 42 H 0.22 2.17 8.06 -2.91 -0.02 2.15 16 43 H 0.19 1.50 8.06 -2.91 -0.02 1.48 16 44 H 0.11 0.68 7.85 -2.39 -0.02 0.66 16 45 H 0.09 0.95 8.11 -2.39 -0.02 0.93 16 46 H 0.02 0.71 7.91 -2.38 -0.02 0.69 16 47 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -74.63 377.97 0.91 -73.72 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: 0.22 Total: 10.81 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: 7.37 Total: 13.45 kcal Atomic # 7 Polarization: -120.03 SS G_CDS: -8.66 Total: -128.69 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: -0.05 Total: -16.43 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -74.63 0.91 -73.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028590796.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.157 kcal (2) G-P(sol) polarization free energy of solvation -74.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds