Wall clock time and date at job start Tue Mar 31 2020 06:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86793 * 120.00302 * 2 1 4 4 H 1.48501 * 109.47310 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47168 * 300.00158 * 3 2 1 6 6 H 1.48497 * 109.47144 * 60.00036 * 3 2 1 7 7 C 1.38819 * 119.99573 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99832 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99866 * 0.02562 * 7 2 1 10 10 C 1.47026 * 125.65326 * 0.02562 * 9 7 2 11 11 C 1.54316 * 107.27365 * 180.79632 * 10 9 7 12 12 C 1.55160 * 102.94268 * 22.19228 * 11 10 9 13 13 H 1.08991 * 111.00600 * 82.57442 * 12 11 10 14 14 C 1.53009 * 111.00399 * 206.42607 * 12 11 10 15 15 N 1.46493 * 109.46988 * 184.99925 * 14 12 11 16 16 C 1.34776 * 120.00047 * 180.02562 * 15 14 12 17 17 O 1.21288 * 119.99992 * 359.97438 * 16 15 14 18 18 C 1.50701 * 120.00491 * 180.02562 * 16 15 14 19 19 H 1.09006 * 109.62917 * 59.58997 * 18 16 15 20 20 C 1.53303 * 109.63634 * 179.97438 * 18 16 15 21 21 C 1.52812 * 108.51760 * 189.47899 * 20 18 16 22 22 C 1.50444 * 110.45609 * 308.97338 * 21 20 18 23 23 N 1.32890 * 118.54117 * 197.66885 * 22 21 20 24 24 C 1.31597 * 121.06304 * 180.22233 * 23 22 21 25 25 N 1.31818 * 121.67450 * 0.03136 * 24 23 22 26 26 C 1.32191 * 120.63971 * 359.88785 * 25 24 23 27 27 C 1.37778 * 122.57399 * 17.71629 * 22 21 20 28 28 C 1.50333 * 122.80258 * 359.35077 * 27 22 21 29 29 C 1.47425 * 125.64542 * 179.71718 * 9 7 2 30 30 H 0.97000 * 119.99477 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.87531 * 300.21350 * 10 9 7 32 32 H 1.09000 * 109.87938 * 61.37603 * 10 9 7 33 33 H 1.08997 * 110.72381 * 140.55486 * 11 10 9 34 34 H 1.09002 * 110.72355 * 263.82891 * 11 10 9 35 35 H 1.08996 * 109.46874 * 305.00213 * 14 12 11 36 36 H 1.09003 * 109.47050 * 64.99678 * 14 12 11 37 37 H 0.97004 * 120.00106 * 0.02562 * 15 14 12 38 38 H 1.08998 * 109.63104 * 309.19195 * 20 18 16 39 39 H 1.09001 * 109.62686 * 69.58021 * 20 18 16 40 40 H 1.09007 * 109.30711 * 69.27155 * 21 20 18 41 41 H 1.08996 * 109.31121 * 188.67046 * 21 20 18 42 42 H 1.07998 * 119.16465 * 180.02562 * 24 23 22 43 43 H 1.07995 * 120.36644 * 180.02562 * 26 25 24 44 44 H 1.09001 * 109.31063 * 257.28550 * 28 27 22 45 45 H 1.09006 * 109.31337 * 137.87865 * 28 27 22 46 46 H 1.09001 * 110.36478 * 274.97390 * 29 9 7 47 47 H 1.08998 * 110.36859 * 37.29768 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8916 2.3963 1.2125 7 6 2.0103 -1.2023 -0.0005 8 1 3.0903 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 -0.1376 -2.5328 -0.0028 11 6 -0.4486 -4.0441 0.0168 12 6 0.8515 -4.6590 0.5990 13 1 0.8561 -4.6043 1.6875 14 6 1.0367 -6.1015 0.1237 15 7 2.2054 -6.6873 0.7849 16 6 2.5639 -7.9587 0.5179 17 8 1.9187 -8.6181 -0.2695 18 6 3.7658 -8.5616 1.1984 19 1 3.6209 -8.5464 2.2787 20 6 3.9548 -10.0073 0.7246 21 6 5.0228 -10.6676 1.5956 22 6 6.2580 -9.8106 1.6533 23 7 7.3974 -10.3652 2.0536 24 6 8.5064 -9.6606 2.1268 25 7 8.5363 -8.3817 1.8090 26 6 7.4416 -7.7632 1.4009 27 6 6.2520 -8.4767 1.3087 28 6 5.0171 -7.7641 0.8321 29 6 1.9333 -3.7312 -0.0082 30 1 -0.4849 0.8401 -0.0004 31 1 -0.5579 -2.0563 0.8830 32 1 -0.5541 -2.0802 -0.9027 33 1 -1.2989 -4.2546 0.6655 34 1 -0.6316 -4.4134 -0.9924 35 1 0.1489 -6.6828 0.3727 36 1 1.1867 -6.1120 -0.9559 37 1 2.7212 -6.1600 1.4149 38 1 3.0150 -10.5506 0.8226 39 1 4.2737 -10.0123 -0.3177 40 1 4.6317 -10.8044 2.6038 41 1 5.2787 -11.6407 1.1764 42 1 9.4153 -10.1425 2.4558 43 1 7.4712 -6.7153 1.1413 44 1 5.0646 -7.6452 -0.2503 45 1 4.9663 -6.7799 1.2979 46 1 2.1664 -4.0370 -1.0281 47 1 2.8327 -3.7436 0.6075 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028590797.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:31 Heat of formation + Delta-G solvation = 18.683678 kcal Electronic energy + Delta-G solvation = -27661.624094 eV Core-core repulsion = 23844.155259 eV Total energy + Delta-G solvation = -3817.468835 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.73623 -40.03911 -37.85998 -36.89952 -34.77572 -34.40020 -32.58006 -31.80652 -30.88378 -29.70106 -28.29044 -25.98436 -25.38660 -24.55802 -23.39588 -23.37958 -21.37531 -20.33328 -20.03730 -19.52596 -18.15368 -17.35470 -17.14298 -16.77227 -16.15867 -15.63962 -15.44999 -15.14131 -14.66601 -14.45755 -14.28705 -14.20291 -14.06288 -13.77668 -13.56309 -13.44808 -13.01942 -12.54667 -12.38735 -12.19331 -12.03630 -11.81235 -11.52858 -11.45530 -11.31565 -11.17221 -10.93600 -10.84694 -10.74019 -10.44862 -10.17745 -10.03695 -9.93407 -9.74106 -9.68541 -9.58482 -9.52478 -9.03986 -8.64328 -6.87527 -5.75396 -3.09104 0.53861 0.69301 2.51930 3.09693 3.36659 3.38678 3.42119 3.44677 3.62752 3.86139 4.05155 4.13524 4.23902 4.40075 4.45798 4.61815 4.84578 4.89415 4.96103 5.01871 5.10176 5.14908 5.16866 5.22681 5.37419 5.38872 5.46727 5.50606 5.62919 5.66014 5.72216 5.84358 5.86726 5.99159 6.01535 6.07598 6.29799 6.36929 6.44176 6.48748 6.63106 6.63274 6.85685 7.45144 7.52152 7.59212 7.73789 7.78911 8.14235 8.21948 9.17986 9.78488 10.44219 11.36389 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.014320 B = 0.002513 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.795534 B =11137.333062 C =12940.647268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.009 4.009 3 Si 0.912 3.088 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.229 4.229 8 H 0.078 0.922 9 N -0.607 5.607 10 C 0.177 3.823 11 C -0.135 4.135 12 C -0.118 4.118 13 H 0.079 0.921 14 C 0.131 3.869 15 N -0.723 5.723 16 C 0.517 3.483 17 O -0.541 6.541 18 C -0.109 4.109 19 H 0.102 0.898 20 C -0.099 4.099 21 C -0.073 4.073 22 C 0.180 3.820 23 N -0.522 5.522 24 C 0.288 3.712 25 N -0.522 5.522 26 C 0.153 3.847 27 C -0.178 4.178 28 C -0.066 4.066 29 C 0.143 3.857 30 H 0.252 0.748 31 H 0.046 0.954 32 H 0.043 0.957 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.401 0.599 38 H 0.089 0.911 39 H 0.075 0.925 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.195 0.805 43 H 0.171 0.829 44 H 0.091 0.909 45 H 0.090 0.910 46 H 0.019 0.981 47 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.860 -20.592 4.827 23.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.357 4.357 8 H 0.096 0.904 9 N -0.333 5.333 10 C 0.052 3.948 11 C -0.174 4.174 12 C -0.137 4.137 13 H 0.098 0.902 14 C 0.008 3.992 15 N -0.374 5.374 16 C 0.302 3.698 17 O -0.418 6.418 18 C -0.130 4.130 19 H 0.121 0.879 20 C -0.137 4.137 21 C -0.111 4.111 22 C 0.036 3.964 23 N -0.236 5.236 24 C 0.000 4.000 25 N -0.235 5.235 26 C -0.014 4.014 27 C -0.182 4.182 28 C -0.104 4.104 29 C 0.016 3.984 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.236 0.764 38 H 0.107 0.893 39 H 0.094 0.906 40 H 0.111 0.889 41 H 0.113 0.887 42 H 0.212 0.788 43 H 0.188 0.812 44 H 0.109 0.891 45 H 0.109 0.891 46 H 0.036 0.964 47 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 10.183 -21.273 4.560 24.021 hybrid contribution 0.059 1.719 0.086 1.722 sum 10.242 -19.554 4.646 22.558 Atomic orbital electron populations 1.69979 1.04895 1.24949 1.57068 1.24817 0.95733 0.97723 1.02240 0.86049 0.78700 0.83767 0.77268 1.20501 1.21739 1.21748 1.19089 0.90420 0.82422 1.43791 0.90435 1.44492 1.01738 0.99880 1.87178 1.21151 0.84331 0.88179 1.01133 1.22859 0.95442 0.99396 0.99710 1.22618 0.98639 0.92030 1.00462 0.90248 1.21422 0.87233 0.93171 0.97382 1.46121 1.31424 1.13403 1.46420 1.20390 0.85492 0.81743 0.82142 1.90710 1.54706 1.60945 1.35409 1.21376 0.92910 0.96808 1.01938 0.87947 1.21423 0.99192 0.93282 0.99842 1.20478 0.90251 0.98290 1.02077 1.21386 0.94020 0.91080 0.89896 1.68400 0.99428 1.40378 1.15424 1.24914 0.96081 0.86957 0.92002 1.68442 1.30772 1.11656 1.12641 1.23362 0.87002 1.00627 0.90396 1.21097 0.98029 0.95769 1.03265 1.20314 0.89192 0.98308 1.02590 1.21573 0.93920 0.86164 0.96697 0.93779 0.93579 0.93870 0.91983 0.92195 0.91642 0.91284 0.76417 0.89277 0.90577 0.88929 0.88675 0.78832 0.81194 0.89064 0.89121 0.96370 0.94686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.70 10.31 55.49 0.57 -26.12 16 2 C -0.01 -0.25 5.49 -17.42 -0.10 -0.34 16 3 Si 0.91 21.72 29.55 -169.99 -5.02 16.70 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.23 -6.22 10.28 -15.06 -0.15 -6.37 16 8 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 9 N -0.61 -14.91 3.39 -170.07 -0.58 -15.48 16 10 C 0.18 4.15 5.37 -3.07 -0.02 4.13 16 11 C -0.14 -2.36 6.42 -24.90 -0.16 -2.52 16 12 C -0.12 -1.81 3.05 -88.46 -0.27 -2.08 16 13 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 14 C 0.13 1.72 5.13 -4.04 -0.02 1.70 16 15 N -0.72 -7.77 5.42 -60.29 -0.33 -8.10 16 16 C 0.52 5.73 7.13 -10.99 -0.08 5.65 16 17 O -0.54 -8.06 15.85 5.55 0.09 -7.97 16 18 C -0.11 -0.84 2.55 -91.70 -0.23 -1.08 16 19 H 0.10 0.65 8.10 -51.93 -0.42 0.23 16 20 C -0.10 -0.76 4.70 -26.67 -0.13 -0.89 16 21 C -0.07 -0.51 5.96 -28.10 -0.17 -0.68 16 22 C 0.18 1.59 6.62 -82.43 -0.55 1.05 16 23 N -0.52 -5.10 10.32 -11.00 -0.11 -5.21 16 24 C 0.29 2.59 12.29 -92.30 -1.13 1.46 16 25 N -0.52 -5.14 10.44 -14.55 -0.15 -5.29 16 26 C 0.15 1.30 10.94 -17.11 -0.19 1.12 16 27 C -0.18 -1.45 5.73 -104.68 -0.60 -2.05 16 28 C -0.07 -0.46 4.89 -28.15 -0.14 -0.60 16 29 C 0.14 2.70 6.65 -2.53 -0.02 2.68 16 30 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 31 H 0.05 1.20 7.40 -51.93 -0.38 0.81 16 32 H 0.04 1.14 7.49 -51.93 -0.39 0.75 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.06 0.99 8.04 -51.93 -0.42 0.58 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.07 0.99 7.96 -51.93 -0.41 0.58 16 37 H 0.40 3.56 8.17 -40.82 -0.33 3.22 16 38 H 0.09 0.72 7.82 -51.93 -0.41 0.32 16 39 H 0.08 0.65 8.10 -51.93 -0.42 0.23 16 40 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.20 1.14 8.06 -52.49 -0.42 0.71 16 43 H 0.17 1.05 8.06 -52.49 -0.42 0.63 16 44 H 0.09 0.69 8.11 -51.93 -0.42 0.27 16 45 H 0.09 0.52 7.89 -51.93 -0.41 0.11 16 46 H 0.02 0.36 7.91 -51.93 -0.41 -0.05 16 47 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 377.89 15.07 5.69 5.69 Total: -1.00 -33.63 377.89 -11.14 -44.76 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -7.35 Total: -0.16 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: -3.94 Total: 1.18 kcal Atomic # 7 Polarization: -59.61 SS G_CDS: -0.60 Total: -60.21 kcal Atomic # 8 Polarization: -8.06 SS G_CDS: 0.09 Total: -7.97 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.63 -11.14 -44.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028590797.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.448 kcal (2) G-P(sol) polarization free energy of solvation -33.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds