Wall clock time and date at job start Tue Mar 31 2020 06:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86793 * 120.00302 * 2 1 4 4 H 1.48501 * 109.47310 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47168 * 300.00158 * 3 2 1 6 6 H 1.48497 * 109.47144 * 60.00036 * 3 2 1 7 7 C 1.38819 * 119.99573 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99832 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99866 * 0.02562 * 7 2 1 10 10 C 1.47026 * 125.65326 * 0.02562 * 9 7 2 11 11 C 1.54316 * 107.27365 * 180.79632 * 10 9 7 12 12 C 1.55160 * 102.94268 * 22.19228 * 11 10 9 13 13 H 1.08991 * 111.00600 * 82.57442 * 12 11 10 14 14 C 1.53009 * 111.00399 * 206.42607 * 12 11 10 15 15 N 1.46493 * 109.46988 * 184.99925 * 14 12 11 16 16 C 1.34776 * 120.00047 * 180.02562 * 15 14 12 17 17 O 1.21288 * 119.99992 * 359.97438 * 16 15 14 18 18 C 1.50701 * 120.00491 * 180.02562 * 16 15 14 19 19 H 1.09006 * 109.62917 * 59.58997 * 18 16 15 20 20 C 1.53303 * 109.63634 * 179.97438 * 18 16 15 21 21 C 1.52812 * 108.51760 * 189.47899 * 20 18 16 22 22 C 1.50444 * 110.45609 * 308.97338 * 21 20 18 23 23 N 1.32890 * 118.54117 * 197.66885 * 22 21 20 24 24 C 1.31597 * 121.06304 * 180.22233 * 23 22 21 25 25 N 1.31818 * 121.67450 * 0.03136 * 24 23 22 26 26 C 1.32191 * 120.63971 * 359.88785 * 25 24 23 27 27 C 1.37778 * 122.57399 * 17.71629 * 22 21 20 28 28 C 1.50333 * 122.80258 * 359.35077 * 27 22 21 29 29 C 1.47425 * 125.64542 * 179.71718 * 9 7 2 30 30 H 0.97000 * 119.99477 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.87531 * 300.21350 * 10 9 7 32 32 H 1.09000 * 109.87938 * 61.37603 * 10 9 7 33 33 H 1.08997 * 110.72381 * 140.55486 * 11 10 9 34 34 H 1.09002 * 110.72355 * 263.82891 * 11 10 9 35 35 H 1.08996 * 109.46874 * 305.00213 * 14 12 11 36 36 H 1.09003 * 109.47050 * 64.99678 * 14 12 11 37 37 H 0.97004 * 120.00106 * 0.02562 * 15 14 12 38 38 H 1.08998 * 109.63104 * 309.19195 * 20 18 16 39 39 H 1.09001 * 109.62686 * 69.58021 * 20 18 16 40 40 H 1.09007 * 109.30711 * 69.27155 * 21 20 18 41 41 H 1.08996 * 109.31121 * 188.67046 * 21 20 18 42 42 H 1.07998 * 119.16465 * 180.02562 * 24 23 22 43 43 H 1.07995 * 120.36644 * 180.02562 * 26 25 24 44 44 H 1.09001 * 109.31063 * 257.28550 * 28 27 22 45 45 H 1.09006 * 109.31337 * 137.87865 * 28 27 22 46 46 H 1.09001 * 110.36478 * 274.97390 * 29 9 7 47 47 H 1.08998 * 110.36859 * 37.29768 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8916 2.3963 1.2125 7 6 2.0103 -1.2023 -0.0005 8 1 3.0903 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 -0.1376 -2.5328 -0.0028 11 6 -0.4486 -4.0441 0.0168 12 6 0.8515 -4.6590 0.5990 13 1 0.8561 -4.6043 1.6875 14 6 1.0367 -6.1015 0.1237 15 7 2.2054 -6.6873 0.7849 16 6 2.5639 -7.9587 0.5179 17 8 1.9187 -8.6181 -0.2695 18 6 3.7658 -8.5616 1.1984 19 1 3.6209 -8.5464 2.2787 20 6 3.9548 -10.0073 0.7246 21 6 5.0228 -10.6676 1.5956 22 6 6.2580 -9.8106 1.6533 23 7 7.3974 -10.3652 2.0536 24 6 8.5064 -9.6606 2.1268 25 7 8.5363 -8.3817 1.8090 26 6 7.4416 -7.7632 1.4009 27 6 6.2520 -8.4767 1.3087 28 6 5.0171 -7.7641 0.8321 29 6 1.9333 -3.7312 -0.0082 30 1 -0.4849 0.8401 -0.0004 31 1 -0.5579 -2.0563 0.8830 32 1 -0.5541 -2.0802 -0.9027 33 1 -1.2989 -4.2546 0.6655 34 1 -0.6316 -4.4134 -0.9924 35 1 0.1489 -6.6828 0.3727 36 1 1.1867 -6.1120 -0.9559 37 1 2.7212 -6.1600 1.4149 38 1 3.0150 -10.5506 0.8226 39 1 4.2737 -10.0123 -0.3177 40 1 4.6317 -10.8044 2.6038 41 1 5.2787 -11.6407 1.1764 42 1 9.4153 -10.1425 2.4558 43 1 7.4712 -6.7153 1.1413 44 1 5.0646 -7.6452 -0.2503 45 1 4.9663 -6.7799 1.2979 46 1 2.1664 -4.0370 -1.0281 47 1 2.8327 -3.7436 0.6075 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028590797.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:31 Heat of formation + Delta-G solvation = -2.337955 kcal Electronic energy + Delta-G solvation = -27662.535661 eV Core-core repulsion = 23844.155259 eV Total energy + Delta-G solvation = -3818.380402 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.36954 -40.93118 -39.31143 -37.66898 -36.00983 -35.06931 -34.27181 -32.45753 -31.88826 -31.13403 -29.75731 -27.34755 -26.35824 -25.55490 -24.59990 -23.98220 -22.31418 -21.75786 -21.39351 -20.49984 -18.97923 -18.70058 -17.96913 -17.80057 -17.21852 -16.72681 -16.41502 -16.38072 -15.98935 -15.56694 -15.17544 -15.10196 -14.84624 -14.77553 -14.52192 -14.36916 -14.02868 -13.87799 -13.77412 -13.44224 -13.12924 -12.99562 -12.83541 -12.73826 -12.64055 -12.18269 -11.96652 -11.93826 -11.86493 -11.83251 -11.78838 -11.51256 -11.43401 -11.36962 -10.72953 -10.69513 -10.20108 -10.16678 -10.01253 -8.87442 -7.83700 -5.18684 -0.08043 0.05863 1.47171 1.47820 1.57934 1.66268 2.22295 2.50739 2.75329 3.04387 3.28514 3.35225 3.45528 3.49828 3.63081 3.65379 3.76441 3.88087 4.00572 4.06504 4.08611 4.26478 4.29881 4.37636 4.48380 4.49185 4.58114 4.65329 4.68303 4.76092 4.83212 4.87467 4.91921 4.97291 5.07492 5.10159 5.10983 5.13628 5.26640 5.40378 5.48441 5.48608 5.54160 5.70103 5.80428 6.00647 6.22160 6.61045 7.10494 7.12290 7.29214 7.80650 8.44677 9.27109 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.014320 B = 0.002513 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.795534 B =11137.333062 C =12940.647268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.070 4.070 3 Si 0.976 3.024 4 H -0.263 1.263 5 H -0.296 1.296 6 H -0.293 1.293 7 C -0.237 4.237 8 H 0.086 0.914 9 N -0.630 5.630 10 C 0.182 3.818 11 C -0.124 4.124 12 C -0.094 4.094 13 H 0.091 0.909 14 C 0.144 3.856 15 N -0.715 5.715 16 C 0.520 3.480 17 O -0.580 6.580 18 C -0.100 4.100 19 H 0.125 0.875 20 C -0.094 4.094 21 C -0.066 4.066 22 C 0.168 3.832 23 N -0.540 5.540 24 C 0.280 3.720 25 N -0.543 5.543 26 C 0.146 3.854 27 C -0.177 4.177 28 C -0.060 4.060 29 C 0.138 3.862 30 H 0.245 0.755 31 H 0.011 0.989 32 H 0.002 0.998 33 H 0.084 0.916 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.058 0.942 37 H 0.414 0.586 38 H 0.085 0.915 39 H 0.063 0.937 40 H 0.106 0.894 41 H 0.098 0.902 42 H 0.217 0.783 43 H 0.190 0.810 44 H 0.086 0.914 45 H 0.109 0.891 46 H 0.018 0.982 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.157 -21.744 5.849 25.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.263 4.263 3 Si 0.805 3.195 4 H -0.187 1.187 5 H -0.223 1.223 6 H -0.220 1.220 7 C -0.366 4.366 8 H 0.104 0.896 9 N -0.356 5.356 10 C 0.057 3.943 11 C -0.163 4.163 12 C -0.114 4.114 13 H 0.109 0.891 14 C 0.020 3.980 15 N -0.367 5.367 16 C 0.307 3.693 17 O -0.460 6.460 18 C -0.121 4.121 19 H 0.143 0.857 20 C -0.133 4.133 21 C -0.103 4.103 22 C 0.025 3.975 23 N -0.254 5.254 24 C -0.008 4.008 25 N -0.256 5.256 26 C -0.021 4.021 27 C -0.181 4.181 28 C -0.099 4.099 29 C 0.013 3.987 30 H 0.054 0.946 31 H 0.030 0.970 32 H 0.020 0.980 33 H 0.102 0.898 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.076 0.924 37 H 0.250 0.750 38 H 0.104 0.896 39 H 0.082 0.918 40 H 0.124 0.876 41 H 0.116 0.884 42 H 0.233 0.767 43 H 0.207 0.793 44 H 0.104 0.896 45 H 0.128 0.872 46 H 0.036 0.964 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 11.523 -22.451 5.599 25.849 hybrid contribution -0.317 2.040 -0.265 2.082 sum 11.206 -20.411 5.334 23.888 Atomic orbital electron populations 1.70205 1.06353 1.25062 1.58675 1.25659 0.96586 1.01090 1.02972 0.85034 0.78365 0.79583 0.76524 1.18678 1.22350 1.22022 1.19518 0.91088 0.83704 1.42287 0.89650 1.44829 1.02452 1.01377 1.86928 1.20914 0.83964 0.91902 0.97525 1.22720 0.97410 0.94929 1.01216 1.22416 0.95726 0.92531 1.00733 0.89100 1.21128 0.88525 0.91571 0.96815 1.46004 1.30836 1.13527 1.46324 1.20872 0.85756 0.81281 0.81380 1.90703 1.56195 1.61866 1.37219 1.21352 0.91537 0.96435 1.02744 0.85737 1.21353 0.99174 0.93439 0.99312 1.20453 0.89306 0.97951 1.02638 1.21723 0.94370 0.91676 0.89779 1.68438 0.99926 1.40832 1.16202 1.25396 0.96763 0.86957 0.91657 1.68486 1.31504 1.12155 1.13497 1.23753 0.86844 1.01589 0.89872 1.21157 0.98315 0.95572 1.03089 1.20303 0.88236 0.98915 1.02427 1.21781 0.95455 0.84184 0.97251 0.94562 0.97040 0.98019 0.89755 0.91219 0.90951 0.92388 0.74976 0.89633 0.91827 0.87551 0.88407 0.76695 0.79270 0.89551 0.87237 0.96406 0.92899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.06 10.31 21.65 0.22 -56.84 16 2 C -0.07 -3.95 5.49 84.86 0.47 -3.49 16 3 Si 0.98 45.02 29.55 68.60 2.03 47.05 16 4 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 5 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 6 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 7 C -0.24 -12.85 10.28 84.04 0.86 -11.98 16 8 H 0.09 4.37 7.83 -2.91 -0.02 4.35 16 9 N -0.63 -30.88 3.39 -691.98 -2.35 -33.23 16 10 C 0.18 8.73 5.37 86.73 0.47 9.19 16 11 C -0.12 -4.16 6.42 31.78 0.20 -3.95 16 12 C -0.09 -2.67 3.05 -9.40 -0.03 -2.70 16 13 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 14 C 0.14 3.37 5.13 86.38 0.44 3.81 16 15 N -0.72 -13.15 5.42 -463.05 -2.51 -15.66 16 16 C 0.52 10.23 7.13 87.66 0.62 10.85 16 17 O -0.58 -16.36 15.85 -3.05 -0.05 -16.41 16 18 C -0.10 -1.27 2.55 -11.49 -0.03 -1.30 16 19 H 0.12 1.11 8.10 -2.38 -0.02 1.09 16 20 C -0.09 -1.29 4.70 30.63 0.14 -1.14 16 21 C -0.07 -0.79 5.96 29.71 0.18 -0.61 16 22 C 0.17 2.67 6.62 42.21 0.28 2.95 16 23 N -0.54 -9.78 10.32 -188.72 -1.95 -11.73 16 24 C 0.28 4.67 12.29 180.94 2.22 6.89 16 25 N -0.54 -9.92 10.44 -199.93 -2.09 -12.00 16 26 C 0.15 2.20 10.94 84.83 0.93 3.13 16 27 C -0.18 -2.52 5.73 -19.90 -0.11 -2.64 16 28 C -0.06 -0.69 4.89 29.68 0.15 -0.54 16 29 C 0.14 4.95 6.65 86.86 0.58 5.53 16 30 H 0.25 14.30 8.31 -92.71 -0.77 13.52 16 31 H 0.01 0.61 7.40 -2.38 -0.02 0.60 16 32 H 0.00 0.09 7.49 -2.39 -0.02 0.07 16 33 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 34 H 0.07 2.21 8.04 -2.39 -0.02 2.19 16 35 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.06 1.53 7.96 -2.39 -0.02 1.51 16 37 H 0.41 5.72 8.17 -92.71 -0.76 4.96 16 38 H 0.09 1.25 7.82 -2.39 -0.02 1.23 16 39 H 0.06 1.03 8.10 -2.39 -0.02 1.01 16 40 H 0.11 1.00 8.14 -2.38 -0.02 0.98 16 41 H 0.10 1.13 8.14 -2.39 -0.02 1.12 16 42 H 0.22 2.25 8.06 -2.91 -0.02 2.22 16 43 H 0.19 1.89 8.06 -2.91 -0.02 1.87 16 44 H 0.09 1.12 8.11 -2.39 -0.02 1.10 16 45 H 0.11 0.85 7.89 -2.38 -0.02 0.83 16 46 H 0.02 0.66 7.91 -2.39 -0.02 0.64 16 47 H 0.05 1.71 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -74.64 377.89 0.90 -73.75 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: 0.22 Total: 11.06 kcal Atomic # 6 Polarization: 6.64 SS G_CDS: 7.37 Total: 14.01 kcal Atomic # 7 Polarization: -120.79 SS G_CDS: -8.67 Total: -129.46 kcal Atomic # 8 Polarization: -16.36 SS G_CDS: -0.05 Total: -16.41 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -74.64 0.90 -73.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028590797.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.408 kcal (2) G-P(sol) polarization free energy of solvation -74.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds