Wall clock time and date at job start Tue Mar 31 2020 05:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.40165 * 120.36496 * 2 1 4 4 N 1.31262 * 120.35519 * 179.97438 * 3 2 1 5 5 C 1.33984 * 120.88042 * 359.97438 * 4 3 2 6 6 N 1.32498 * 132.34252 * 179.97438 * 5 4 3 7 7 C 1.33467 * 109.75652 * 180.02562 * 6 5 4 8 8 C 1.48128 * 125.32259 * 180.02562 * 7 6 5 9 9 O 1.21528 * 119.99835 * 179.97438 * 8 7 6 10 10 N 1.34776 * 120.00057 * 359.97251 * 8 7 6 11 11 C 1.46501 * 119.99843 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47126 * 179.97438 * 11 10 8 13 13 H 1.08992 * 110.64378 * 305.70381 * 12 11 10 14 14 C 1.55158 * 110.72128 * 182.55867 * 12 11 10 15 15 C 1.54906 * 101.58534 * 206.13704 * 14 12 11 16 16 N 1.47426 * 104.82893 * 37.01114 * 15 14 12 17 17 C 1.36943 * 125.64726 * 155.90450 * 16 15 14 18 18 H 1.07997 * 120.00048 * 342.05153 * 17 16 15 19 19 C 1.38814 * 119.99544 * 162.05198 * 17 16 15 20 20 N 1.31627 * 119.99338 * 156.24563 * 19 17 16 21 21 Si 1.86789 * 120.00624 * 336.24452 * 19 17 16 22 22 H 1.48499 * 109.47258 * 84.66653 * 21 19 17 23 23 H 1.48494 * 109.47509 * 204.67094 * 21 19 17 24 24 H 1.48504 * 109.47095 * 324.67273 * 21 19 17 25 25 C 1.47317 * 108.73803 * 335.71568 * 16 15 14 26 26 N 1.31992 * 109.35078 * 0.02562 * 7 6 5 27 27 N 1.36870 * 120.22731 * 0.02562 * 5 4 3 28 28 C 1.35686 * 120.35927 * 179.90926 * 2 1 3 29 29 H 1.09001 * 109.47220 * 89.99544 * 1 2 3 30 30 H 1.09000 * 109.47508 * 210.00311 * 1 2 3 31 31 H 1.09004 * 109.47191 * 330.00168 * 1 2 3 32 32 H 1.07998 * 119.82605 * 359.97438 * 3 2 1 33 33 H 0.96992 * 120.00187 * 0.02562 * 10 8 7 34 34 H 1.08994 * 109.47558 * 300.00660 * 11 10 8 35 35 H 1.09008 * 109.46671 * 60.00523 * 11 10 8 36 36 H 1.09003 * 111.00610 * 324.21919 * 14 12 11 37 37 H 1.09006 * 111.00029 * 88.02750 * 14 12 11 38 38 H 1.08995 * 110.37043 * 155.84680 * 15 14 12 39 39 H 1.09000 * 110.36697 * 278.06702 * 15 14 12 40 40 H 0.96991 * 119.99685 * 180.02562 * 20 19 17 41 41 H 1.08997 * 110.06601 * 241.87234 * 25 16 15 42 42 H 1.09001 * 109.85143 * 120.60991 * 25 16 15 43 43 H 1.07999 * 120.48611 * 0.08282 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2155 1.2094 0.0000 4 7 3.5281 1.2092 0.0005 5 6 4.2156 0.0591 0.0015 6 7 5.5141 -0.2044 0.0018 7 6 5.7064 -1.5251 0.0024 8 6 7.0258 -2.1985 0.0034 9 8 7.0886 -3.4122 0.0044 10 7 8.1566 -1.4652 0.0031 11 6 9.4615 -2.1312 0.0047 12 6 10.5715 -1.0783 0.0034 13 1 10.4409 -0.3833 -0.8260 14 6 11.9676 -1.7524 -0.0598 15 6 12.8608 -0.6818 0.6151 16 7 12.0266 -0.1190 1.6925 17 6 12.4923 0.4953 2.8243 18 1 13.5169 0.3518 3.1339 19 6 11.6473 1.3025 3.5736 20 7 11.8967 1.5113 4.8490 21 14 10.1565 2.0924 2.7719 22 1 9.0238 1.1321 2.7788 23 1 9.7758 3.3123 3.5282 24 1 10.4846 2.4606 1.3712 25 6 10.6087 -0.3225 1.3484 26 7 4.5371 -2.1374 0.0020 27 7 3.5541 -1.1391 0.0016 28 6 2.1928 -1.1708 0.0019 29 1 -0.3634 0.0001 -1.0277 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 1.6786 2.1465 -0.0004 33 1 8.1066 -0.4966 0.0027 34 1 9.5511 -2.7531 0.8953 35 1 9.5520 -2.7551 -0.8846 36 1 11.9779 -2.6836 0.5067 37 1 12.2729 -1.9223 -1.0924 38 1 13.7569 -1.1425 1.0307 39 1 13.1313 0.0934 -0.1018 40 1 11.3061 2.0749 5.3726 41 1 10.1067 0.6396 1.2469 42 1 10.1219 -0.9172 2.1213 43 1 1.6666 -2.1140 0.0020 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028621467.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:21 Heat of formation + Delta-G solvation = 138.870873 kcal Electronic energy + Delta-G solvation = -27313.507193 eV Core-core repulsion = 23397.709722 eV Total energy + Delta-G solvation = -3915.797471 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.36781 -40.10784 -39.08330 -37.92599 -35.23047 -34.82442 -33.60070 -32.52606 -31.23931 -30.53018 -28.86950 -27.94044 -26.24002 -25.52023 -24.26008 -23.37443 -23.03339 -20.81862 -20.26804 -20.02367 -19.07361 -18.48721 -17.50095 -17.17502 -16.84638 -16.33402 -16.18549 -15.71220 -15.17913 -14.76385 -14.55007 -14.27386 -13.88684 -13.84644 -13.47275 -13.34925 -13.16310 -13.01892 -12.96868 -12.79232 -12.43713 -12.24653 -11.93793 -11.54072 -11.27724 -10.94221 -10.77324 -10.74882 -10.53362 -10.51522 -10.32832 -10.17777 -10.08821 -9.82782 -9.29710 -9.24546 -9.11040 -8.57224 -7.02193 -5.90609 -3.18951 -0.17222 0.10296 1.25858 1.43899 2.54732 2.70950 2.91280 3.15986 3.42261 3.53938 3.56441 3.58571 3.69173 4.00954 4.12868 4.35207 4.59967 4.61375 4.82859 4.85716 5.02141 5.04129 5.09103 5.15662 5.26879 5.30270 5.46823 5.49604 5.55661 5.62001 5.64698 5.79594 5.85783 6.04082 6.09470 6.27473 6.29109 6.48880 6.62518 6.77292 6.82188 6.86098 7.15873 7.46594 7.75201 7.94538 8.35540 8.87705 9.73811 10.22447 11.25802 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.014703 B = 0.003015 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.962198 B = 9283.428894 C =10702.024101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.184 4.184 3 C 0.213 3.787 4 N -0.442 5.442 5 C 0.439 3.561 6 N -0.495 5.495 7 C 0.243 3.757 8 C 0.610 3.390 9 O -0.509 6.509 10 N -0.697 5.697 11 C 0.132 3.868 12 C -0.117 4.117 13 H 0.083 0.917 14 C -0.120 4.120 15 C 0.133 3.867 16 N -0.610 5.610 17 C -0.243 4.243 18 H 0.093 0.907 19 C 0.020 3.980 20 N -0.907 5.907 21 Si 0.886 3.114 22 H -0.285 1.285 23 H -0.304 1.304 24 H -0.279 1.279 25 C 0.123 3.877 26 N -0.267 5.267 27 N -0.324 5.324 28 C 0.166 3.834 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.194 0.806 33 H 0.415 0.585 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.050 0.950 39 H 0.025 0.975 40 H 0.263 0.737 41 H 0.026 0.974 42 H 0.043 0.957 43 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.033 -4.018 -14.121 29.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.191 4.191 3 C 0.025 3.975 4 N -0.155 5.155 5 C 0.079 3.921 6 N -0.229 5.229 7 C -0.041 4.041 8 C 0.389 3.611 9 O -0.381 6.381 10 N -0.349 5.349 11 C 0.009 3.991 12 C -0.137 4.137 13 H 0.102 0.898 14 C -0.159 4.159 15 C 0.007 3.993 16 N -0.337 5.337 17 C -0.369 4.369 18 H 0.111 0.889 19 C -0.178 4.178 20 N -0.551 5.551 21 Si 0.718 3.282 22 H -0.212 1.212 23 H -0.233 1.233 24 H -0.206 1.206 25 C -0.002 4.002 26 N -0.101 5.101 27 N -0.105 5.105 28 C 0.029 3.971 29 H 0.101 0.899 30 H 0.096 0.904 31 H 0.102 0.898 32 H 0.210 0.790 33 H 0.251 0.749 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.069 0.931 39 H 0.043 0.957 40 H 0.072 0.928 41 H 0.043 0.957 42 H 0.061 0.939 43 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -23.844 -4.716 -13.874 27.987 hybrid contribution -1.708 0.630 -0.286 1.843 sum -25.552 -4.086 -14.160 29.497 Atomic orbital electron populations 1.20651 0.86847 1.04450 1.03665 1.20693 0.99478 0.91999 1.06963 1.23672 0.88021 0.99044 0.86751 1.68116 1.08774 1.22273 1.16380 1.22662 0.89267 0.82894 0.97307 1.70868 1.11048 1.13715 1.27273 1.24247 0.95049 0.87721 0.97067 1.16257 0.80766 0.85804 0.78242 1.90851 1.86016 1.12205 1.49055 1.45826 1.05099 1.11507 1.72445 1.21610 0.79353 0.95110 1.03046 1.22478 0.94583 0.97058 0.99538 0.89834 1.22730 0.93612 0.99117 1.00442 1.21609 0.94090 0.93413 0.90175 1.44858 0.99599 1.68468 1.20774 1.18659 0.98911 1.22455 0.96922 0.88944 1.24961 0.98059 0.99242 0.95549 1.69865 1.39702 1.40412 1.05143 0.86926 0.83509 0.78975 0.78786 1.21198 1.23256 1.20579 1.21786 0.88303 0.96806 0.93328 1.78937 0.95073 1.06906 1.29176 1.49016 1.07100 1.08784 1.45559 1.22056 0.79221 1.01702 0.94118 0.89935 0.90440 0.89786 0.78962 0.74861 0.90197 0.90547 0.90791 0.91126 0.93126 0.95748 0.92769 0.95656 0.93897 0.79765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.03 10.03 36.00 0.36 0.33 16 2 C -0.18 -0.79 5.87 -104.81 -0.61 -1.40 16 3 C 0.21 1.25 10.96 -17.07 -0.19 1.06 16 4 N -0.44 -5.11 10.48 -13.79 -0.14 -5.26 16 5 C 0.44 6.28 8.98 -323.05 -2.90 3.37 16 6 N -0.50 -8.29 10.89 -12.23 -0.13 -8.43 16 7 C 0.24 4.06 7.92 -156.78 -1.24 2.81 16 8 C 0.61 10.41 7.84 -12.20 -0.10 10.31 16 9 O -0.51 -9.63 17.07 5.34 0.09 -9.54 16 10 N -0.70 -11.10 5.43 -61.16 -0.33 -11.43 16 11 C 0.13 1.98 5.00 -4.04 -0.02 1.96 16 12 C -0.12 -1.92 2.98 -88.78 -0.26 -2.18 16 13 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 14 C -0.12 -1.84 6.54 -24.58 -0.16 -2.00 16 15 C 0.13 2.58 7.23 -2.53 -0.02 2.56 16 16 N -0.61 -15.02 3.22 -169.84 -0.55 -15.56 16 17 C -0.24 -7.05 10.56 -15.06 -0.16 -7.21 16 18 H 0.09 2.82 8.06 -52.49 -0.42 2.40 16 19 C 0.02 0.62 5.43 -17.43 -0.09 0.52 16 20 N -0.91 -28.78 13.97 55.49 0.78 -28.00 16 21 Si 0.89 23.70 24.39 -169.99 -4.15 19.55 16 22 H -0.28 -7.44 6.83 56.52 0.39 -7.05 16 23 H -0.30 -8.24 7.11 56.52 0.40 -7.83 16 24 H -0.28 -7.31 6.87 56.52 0.39 -6.92 16 25 C 0.12 2.70 4.55 -2.90 -0.01 2.69 16 26 N -0.27 -4.15 12.78 32.02 0.41 -3.74 16 27 N -0.32 -4.02 3.91 -13.80 -0.05 -4.07 16 28 C 0.17 1.13 10.97 -16.54 -0.18 0.95 16 29 H 0.08 -0.04 8.14 -51.93 -0.42 -0.46 16 30 H 0.08 -0.02 8.09 -51.93 -0.42 -0.44 16 31 H 0.08 -0.07 8.10 -51.93 -0.42 -0.49 16 32 H 0.19 0.27 8.06 -52.49 -0.42 -0.16 16 33 H 0.41 6.61 8.07 -40.82 -0.33 6.28 16 34 H 0.08 1.28 8.01 -51.93 -0.42 0.86 16 35 H 0.08 1.01 8.14 -51.92 -0.42 0.59 16 36 H 0.07 1.10 8.05 -51.93 -0.42 0.68 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 39 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.26 7.92 8.31 -40.82 -0.34 7.58 16 41 H 0.03 0.61 3.55 -51.93 -0.18 0.43 16 42 H 0.04 1.01 7.73 -51.93 -0.40 0.61 16 43 H 0.19 0.64 8.06 -52.49 -0.42 0.22 16 LS Contribution 360.73 15.07 5.44 5.44 Total: -1.00 -39.30 360.73 -9.79 -49.09 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: -5.56 Total: -1.83 kcal Atomic # 6 Polarization: 19.37 SS G_CDS: -5.59 Total: 13.78 kcal Atomic # 7 Polarization: -76.47 SS G_CDS: -0.03 Total: -76.49 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.09 Total: -9.54 kcal Atomic # 14 Polarization: 23.70 SS G_CDS: -4.15 Total: 19.55 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -39.30 -9.79 -49.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028621467.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.961 kcal (2) G-P(sol) polarization free energy of solvation -39.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds