Wall clock time and date at job start Tue Mar 31 2020 05:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 N 1.40188 * 126.59177 * 2 1 4 4 N 1.28655 * 109.51402 * 179.97438 * 3 2 1 5 5 C 1.35339 * 109.99758 * 0.02562 * 4 3 2 6 6 C 1.39909 * 133.26656 * 180.31627 * 5 4 3 7 7 C 1.39430 * 118.09321 * 180.12539 * 6 5 4 8 8 C 1.47718 * 120.34995 * 179.78461 * 7 6 5 9 9 O 1.21565 * 120.00279 * 359.71560 * 8 7 6 10 10 N 1.34784 * 119.99789 * 179.71776 * 8 7 6 11 11 C 1.46494 * 119.99635 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.47001 * 180.02562 * 11 10 8 13 13 H 1.09000 * 110.63788 * 305.69942 * 12 11 10 14 14 C 1.55153 * 110.72143 * 182.56205 * 12 11 10 15 15 C 1.54910 * 101.57980 * 206.13053 * 14 12 11 16 16 N 1.47425 * 104.83576 * 37.00954 * 15 14 12 17 17 C 1.36932 * 125.65412 * 155.90378 * 16 15 14 18 18 H 1.07998 * 119.99937 * 179.97438 * 17 16 15 19 19 C 1.38816 * 119.99867 * 359.97438 * 17 16 15 20 20 N 1.31619 * 119.99791 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99994 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46870 * 90.00155 * 21 19 17 23 23 H 1.48503 * 109.47079 * 209.99951 * 21 19 17 24 24 H 1.48497 * 109.47331 * 330.00368 * 21 19 17 25 25 C 1.47325 * 108.72928 * 335.71570 * 16 15 14 26 26 C 1.40122 * 119.29672 * 359.50180 * 7 6 5 27 27 N 1.31261 * 121.14628 * 0.27933 * 26 7 6 28 28 C 1.32709 * 121.80449 * 359.97438 * 27 26 7 29 29 H 1.09002 * 109.47032 * 269.99918 * 1 2 3 30 30 H 1.08994 * 109.46921 * 29.99710 * 1 2 3 31 31 H 1.08996 * 109.46910 * 149.99698 * 1 2 3 32 32 H 1.08000 * 120.95281 * 359.90294 * 6 5 4 33 33 H 0.96995 * 120.00015 * 359.72418 * 10 8 7 34 34 H 1.09005 * 109.47306 * 299.99972 * 11 10 8 35 35 H 1.09002 * 109.47518 * 60.00210 * 11 10 8 36 36 H 1.09002 * 111.00104 * 324.19945 * 14 12 11 37 37 H 1.08994 * 111.00894 * 88.01756 * 14 12 11 38 38 H 1.09009 * 110.36695 * 155.84547 * 15 14 12 39 39 H 1.08997 * 110.36802 * 278.05770 * 15 14 12 40 40 H 0.97004 * 119.99832 * 179.97438 * 20 19 17 41 41 H 1.09003 * 110.05861 * 241.87011 * 25 16 15 42 42 H 1.08993 * 109.85005 * 120.61635 * 25 16 15 43 43 H 1.07997 * 119.42340 * 180.25422 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.3007 1.1256 0.0000 4 7 3.5306 0.7477 0.0005 5 6 3.5995 -0.6039 0.0004 6 6 4.6658 -1.5097 0.0064 7 6 4.3699 -2.8722 0.0013 8 6 5.4572 -3.8721 0.0025 9 8 6.6173 -3.5087 0.0026 10 7 5.1631 -5.1875 0.0033 11 6 6.2414 -6.1791 0.0039 12 6 5.6403 -7.5861 0.0041 13 1 4.9418 -7.7053 0.8323 14 6 6.7578 -8.6604 0.0696 15 6 6.0660 -9.8704 -0.6065 16 7 5.2500 -9.2842 -1.6854 17 6 4.8381 -9.9346 -2.8178 18 1 4.2401 -9.4149 -3.5518 19 6 5.1892 -11.2620 -3.0224 20 7 5.9184 -11.8952 -2.1282 21 14 4.6266 -12.1495 -4.5669 22 1 5.6425 -11.9749 -5.6358 23 1 4.4600 -13.5957 -4.2738 24 1 3.3303 -11.5834 -5.0188 25 6 4.9471 -7.8840 -1.3420 26 6 3.0302 -3.2829 0.0011 27 7 2.0518 -2.4079 0.0001 28 6 2.2824 -1.1010 -0.0002 29 1 -0.3633 0.0000 1.0277 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3633 -0.8899 -0.5139 32 1 5.6888 -1.1634 0.0111 33 1 4.2375 -5.4775 0.0071 34 1 6.8566 -6.0474 -0.8862 35 1 6.8567 -6.0463 0.8938 36 1 7.6353 -8.3463 -0.4955 37 1 7.0215 -8.8875 1.1025 38 1 6.8105 -10.5504 -1.0206 39 1 5.4320 -10.3935 0.1093 40 1 6.1634 -12.8228 -2.2710 41 1 3.8701 -7.7481 -1.2425 42 1 5.3366 -7.2209 -2.1143 43 1 2.7987 -4.3378 0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028694947.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:38 Heat of formation + Delta-G solvation = 123.843163 kcal Electronic energy + Delta-G solvation = -26876.920444 eV Core-core repulsion = 22960.471322 eV Total energy + Delta-G solvation = -3916.449121 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.78422 -40.26385 -38.61686 -37.63855 -35.34465 -34.84657 -32.76142 -32.52093 -31.25935 -29.77484 -28.41092 -28.07949 -25.97551 -25.09099 -24.57991 -23.28902 -21.92096 -21.25713 -20.18477 -19.82620 -18.83171 -18.31658 -17.39129 -16.91833 -16.89706 -16.42619 -15.85128 -15.44131 -14.91724 -14.61698 -14.45625 -14.14943 -14.00124 -13.73780 -13.59796 -13.47233 -13.42108 -12.91473 -12.87313 -12.55463 -12.13984 -11.82459 -11.76748 -11.55447 -11.40840 -10.98877 -10.82823 -10.64620 -10.39169 -10.15097 -10.05634 -9.94365 -9.80059 -9.73600 -9.55737 -9.41840 -9.07851 -8.68141 -6.87174 -5.68631 -3.10406 -0.23645 0.19120 1.30966 1.62582 2.48434 2.84151 3.29650 3.30151 3.37927 3.42972 3.44776 3.66312 3.82699 4.08313 4.17197 4.42819 4.46553 4.59296 4.75027 4.89762 4.91418 5.05157 5.19257 5.27234 5.33006 5.38737 5.48632 5.62201 5.64811 5.82258 5.87756 5.99735 6.04482 6.27220 6.30664 6.49418 6.54216 6.65719 6.84949 6.99969 7.31607 7.35339 7.47791 7.59157 7.82479 7.99526 8.33236 9.18861 9.79666 10.44074 11.35291 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.018753 B = 0.002221 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.706493 B =12603.955015 C =13598.351364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.385 5.385 3 N 0.011 4.989 4 N -0.196 5.196 5 C -0.075 4.075 6 C 0.084 3.916 7 C -0.205 4.205 8 C 0.567 3.433 9 O -0.533 6.533 10 N -0.716 5.716 11 C 0.132 3.868 12 C -0.116 4.116 13 H 0.077 0.923 14 C -0.135 4.135 15 C 0.151 3.849 16 N -0.605 5.605 17 C -0.223 4.223 18 H 0.077 0.923 19 C -0.011 4.011 20 N -0.922 5.922 21 Si 0.914 3.086 22 H -0.288 1.288 23 H -0.290 1.290 24 H -0.282 1.282 25 C 0.139 3.861 26 C 0.213 3.787 27 N -0.485 5.485 28 C 0.287 3.713 29 H 0.085 0.915 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.166 0.834 33 H 0.400 0.600 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.107 0.893 39 H 0.012 0.988 40 H 0.252 0.748 41 H 0.019 0.981 42 H 0.026 0.974 43 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.567 20.642 7.758 23.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.181 5.181 3 N 0.029 4.971 4 N -0.076 5.076 5 C -0.201 4.201 6 C 0.053 3.947 7 C -0.214 4.214 8 C 0.353 3.647 9 O -0.410 6.410 10 N -0.368 5.368 11 C 0.009 3.991 12 C -0.135 4.135 13 H 0.096 0.904 14 C -0.174 4.174 15 C 0.027 3.973 16 N -0.331 5.331 17 C -0.352 4.352 18 H 0.095 0.905 19 C -0.207 4.207 20 N -0.571 5.571 21 Si 0.745 3.255 22 H -0.216 1.216 23 H -0.216 1.216 24 H -0.208 1.208 25 C 0.013 3.987 26 C 0.039 3.961 27 N -0.199 5.199 28 C 0.044 3.956 29 H 0.104 0.896 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.184 0.816 33 H 0.236 0.764 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.125 0.875 39 H 0.030 0.970 40 H 0.063 0.937 41 H 0.037 0.963 42 H 0.044 0.956 43 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -8.691 22.042 7.647 24.897 hybrid contribution -0.385 -1.370 -0.753 1.610 sum -9.076 20.672 6.894 23.605 Atomic orbital electron populations 1.22122 0.71727 1.05656 1.04536 1.50020 1.08338 1.02401 1.57323 1.81773 0.94007 1.06271 1.15020 1.74885 1.11199 1.09989 1.11526 1.20382 0.94289 0.91431 1.13950 1.21081 0.99247 0.89515 0.84892 1.20800 0.95331 0.94331 1.10981 1.17668 0.87785 0.82243 0.77035 1.90814 1.20081 1.80282 1.49853 1.45975 1.11113 1.05286 1.74380 1.21552 0.88876 0.86084 1.02566 1.22466 0.99090 0.92742 0.99215 0.90448 1.23004 0.97026 0.97144 1.00231 1.21935 0.94726 0.92122 0.88565 1.44568 1.60793 1.06742 1.20966 1.19068 1.26841 0.93552 0.95702 0.90532 1.24790 1.00571 0.96700 0.98629 1.69792 1.41886 1.10805 1.34584 0.86076 0.78148 0.78959 0.82330 1.21569 1.21649 1.20760 1.21406 0.96109 0.88413 0.92729 1.23115 0.86401 0.98991 0.87589 1.66648 1.36815 0.98484 1.17941 1.19559 0.88944 0.89021 0.98092 0.89644 0.88256 0.88194 0.81605 0.76434 0.90770 0.91188 0.91765 0.92053 0.87512 0.96993 0.93703 0.96322 0.95646 0.80315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.46 11.54 59.85 0.69 1.15 16 2 N -0.38 -3.56 4.10 -67.18 -0.28 -3.84 16 3 N 0.01 0.12 13.71 60.35 0.83 0.94 16 4 N -0.20 -2.34 12.40 32.17 0.40 -1.94 16 5 C -0.07 -0.84 7.27 -84.73 -0.62 -1.46 16 6 C 0.08 0.86 9.75 -38.51 -0.38 0.48 16 7 C -0.21 -2.01 5.88 -104.87 -0.62 -2.63 16 8 C 0.57 6.69 7.77 -12.38 -0.10 6.59 16 9 O -0.53 -8.14 16.39 5.31 0.09 -8.05 16 10 N -0.72 -7.70 5.38 -61.29 -0.33 -8.03 16 11 C 0.13 1.71 5.00 -4.04 -0.02 1.69 16 12 C -0.12 -1.73 2.98 -88.79 -0.26 -1.99 16 13 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 14 C -0.13 -2.33 6.54 -24.58 -0.16 -2.49 16 15 C 0.15 3.50 5.89 -2.53 -0.01 3.48 16 16 N -0.60 -14.80 3.40 -169.83 -0.58 -15.38 16 17 C -0.22 -6.06 10.28 -15.06 -0.15 -6.21 16 18 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 19 C -0.01 -0.32 5.49 -17.43 -0.10 -0.41 16 20 N -0.92 -26.34 10.09 55.49 0.56 -25.78 16 21 Si 0.91 21.68 29.55 -169.99 -5.02 16.65 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 C 0.14 2.62 6.67 -2.90 -0.02 2.60 16 26 C 0.21 1.78 10.69 -17.09 -0.18 1.60 16 27 N -0.49 -4.74 10.37 -12.03 -0.12 -4.86 16 28 C 0.29 3.04 8.05 -155.94 -1.26 1.79 16 29 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.10 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.17 1.58 7.71 -52.49 -0.40 1.18 16 33 H 0.40 3.32 6.44 -40.82 -0.26 3.06 16 34 H 0.07 1.08 8.00 -51.93 -0.42 0.66 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.06 1.11 8.05 -51.93 -0.42 0.70 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.11 2.82 5.87 -51.92 -0.30 2.51 16 39 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 40 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 41 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 42 H 0.03 0.49 7.73 -51.93 -0.40 0.09 16 43 H 0.18 0.95 6.39 -52.49 -0.34 0.62 16 LS Contribution 361.98 15.07 5.46 5.46 Total: -1.00 -33.96 361.98 -7.66 -41.61 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -5.47 Total: -0.97 kcal Atomic # 6 Polarization: 7.37 SS G_CDS: -3.18 Total: 4.19 kcal Atomic # 7 Polarization: -59.37 SS G_CDS: 0.48 Total: -58.89 kcal Atomic # 8 Polarization: -8.14 SS G_CDS: 0.09 Total: -8.05 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.96 -7.66 -41.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028694947.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.457 kcal (2) G-P(sol) polarization free energy of solvation -33.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds