Wall clock time and date at job start Tue Mar 31 2020 05:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40186 * 126.59095 * 2 1 4 4 N 1.28671 * 109.51073 * 180.02562 * 3 2 1 5 5 C 1.35329 * 109.99717 * 0.02562 * 4 3 2 6 6 C 1.39901 * 133.27005 * 180.02562 * 5 4 3 7 7 C 1.39425 * 118.10127 * 179.97438 * 6 5 4 8 8 C 1.47727 * 120.35383 * 180.02562 * 7 6 5 9 9 O 1.21561 * 119.99809 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99699 * 180.02562 * 8 7 6 11 11 C 1.46505 * 119.99638 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.47097 * 179.97438 * 11 10 8 13 13 H 1.09005 * 110.63669 * 51.85851 * 12 11 10 14 14 C 1.55156 * 110.71830 * 174.99627 * 12 11 10 15 15 C 1.54906 * 101.61451 * 154.02508 * 14 12 11 16 16 N 1.47471 * 104.81210 * 323.04512 * 15 14 12 17 17 C 1.36937 * 125.62509 * 204.14198 * 16 15 14 18 18 H 1.08004 * 119.99479 * 179.91598 * 17 16 15 19 19 C 1.38806 * 120.00537 * 359.91425 * 17 16 15 20 20 N 1.31628 * 120.00035 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00199 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47139 * 59.99880 * 21 19 17 23 23 H 1.48502 * 109.47021 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.46988 * 299.99649 * 21 19 17 25 25 C 1.47017 * 108.71970 * 24.07007 * 16 15 14 26 26 C 1.40123 * 119.29459 * 0.27409 * 7 6 5 27 27 N 1.31257 * 121.14935 * 359.44506 * 26 7 6 28 28 C 1.32720 * 121.79950 * 0.54938 * 27 26 7 29 29 H 1.09002 * 109.47344 * 89.96741 * 1 2 3 30 30 H 1.08998 * 109.47652 * 209.97038 * 1 2 3 31 31 H 1.09000 * 109.47264 * 329.96981 * 1 2 3 32 32 H 1.08006 * 120.94896 * 359.97438 * 6 5 4 33 33 H 0.97001 * 120.00552 * 359.97438 * 10 8 7 34 34 H 1.09006 * 109.47066 * 59.99373 * 11 10 8 35 35 H 1.09000 * 109.47236 * 299.99784 * 11 10 8 36 36 H 1.09002 * 111.00677 * 272.12092 * 14 12 11 37 37 H 1.09002 * 111.00564 * 35.93350 * 14 12 11 38 38 H 1.09008 * 110.36753 * 81.85112 * 15 14 12 39 39 H 1.09001 * 110.37094 * 204.16995 * 15 14 12 40 40 H 0.96994 * 120.00079 * 179.97438 * 20 19 17 41 41 H 1.08998 * 109.88206 * 239.55467 * 25 16 15 42 42 H 1.09007 * 109.88177 * 118.39340 * 25 16 15 43 43 H 1.08006 * 119.42227 * 179.72431 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3006 1.1256 0.0000 4 7 3.5306 0.7476 -0.0005 5 6 3.5995 -0.6039 -0.0015 6 6 4.6656 -1.5097 -0.0019 7 6 4.3697 -2.8722 -0.0024 8 6 5.4571 -3.8723 -0.0023 9 8 6.6171 -3.5088 -0.0022 10 7 5.1629 -5.1875 -0.0033 11 6 6.2412 -6.1793 -0.0026 12 6 5.6401 -7.5863 -0.0033 13 1 4.9104 -7.6919 -0.8062 14 6 6.7540 -8.6590 -0.1292 15 6 6.0872 -9.8819 0.5487 16 7 5.3100 -9.3159 1.6668 17 6 4.9399 -9.9873 2.8015 18 1 4.3698 -9.4813 3.5666 19 6 5.2975 -11.3181 2.9683 20 7 5.9918 -11.9350 2.0356 21 14 4.7920 -12.2342 4.5158 22 1 3.3110 -12.2444 4.6236 23 1 5.2927 -13.6307 4.4502 24 1 5.3701 -11.5558 5.7037 25 6 4.9998 -7.9114 1.3626 26 6 3.0301 -3.2829 -0.0083 27 7 2.0517 -2.4080 -0.0025 28 6 2.2823 -1.1009 -0.0016 29 1 -0.3634 0.0006 -1.0277 30 1 -0.3634 -0.8902 0.5133 31 1 -0.3634 0.8897 0.5143 32 1 5.6887 -1.1635 -0.0019 33 1 4.2372 -5.4776 -0.0037 34 1 6.8555 -6.0474 0.8881 35 1 6.8574 -6.0466 -0.8918 36 1 6.9798 -8.8669 -1.1751 37 1 7.6517 -8.3551 0.4091 38 1 5.4263 -10.3911 -0.1529 39 1 6.8463 -10.5689 0.9229 40 1 6.2420 -12.8648 2.1523 41 1 5.4197 -7.2639 2.1323 42 1 3.9199 -7.7737 1.3079 43 1 2.7985 -4.3379 -0.0132 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028694948.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:41 Heat of formation + Delta-G solvation = 123.902273 kcal Electronic energy + Delta-G solvation = -26858.111361 eV Core-core repulsion = 22941.664803 eV Total energy + Delta-G solvation = -3916.446558 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.78583 -40.26461 -38.61790 -37.64843 -35.34799 -34.85305 -32.76258 -32.52259 -31.26146 -29.78019 -28.41325 -28.08273 -25.97537 -25.09053 -24.57898 -23.28565 -21.92333 -21.25622 -20.18700 -19.83898 -18.82779 -18.31569 -17.39526 -16.92046 -16.89748 -16.42668 -15.86381 -15.43495 -14.91562 -14.60955 -14.45854 -14.15265 -13.99702 -13.74151 -13.60355 -13.47539 -13.42204 -12.91621 -12.87205 -12.54854 -12.14237 -11.82273 -11.78125 -11.55668 -11.41296 -10.99178 -10.81654 -10.63762 -10.38651 -10.16857 -10.05980 -9.94779 -9.80030 -9.73802 -9.55457 -9.42056 -9.08023 -8.67615 -6.86868 -5.68362 -3.10215 -0.23903 0.18891 1.30738 1.62335 2.48236 2.83947 3.29270 3.30029 3.38515 3.42913 3.44122 3.66058 3.82485 4.08032 4.16900 4.42771 4.46685 4.59026 4.74797 4.89503 4.91199 5.05228 5.18747 5.27015 5.33068 5.38537 5.48840 5.62117 5.65554 5.82454 5.87502 5.99901 6.04503 6.27092 6.30805 6.50152 6.54344 6.65966 6.85359 6.99651 7.31418 7.35080 7.47828 7.59281 7.82724 7.99378 8.33475 9.19070 9.80106 10.44392 11.35553 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.019189 B = 0.002197 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.819861 B =12744.432585 C =13692.909385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.385 5.385 3 N 0.011 4.989 4 N -0.196 5.196 5 C -0.075 4.075 6 C 0.083 3.917 7 C -0.205 4.205 8 C 0.567 3.433 9 O -0.533 6.533 10 N -0.717 5.717 11 C 0.132 3.868 12 C -0.116 4.116 13 H 0.077 0.923 14 C -0.135 4.135 15 C 0.151 3.849 16 N -0.604 5.604 17 C -0.224 4.224 18 H 0.076 0.924 19 C -0.011 4.011 20 N -0.922 5.922 21 Si 0.915 3.085 22 H -0.286 1.286 23 H -0.290 1.290 24 H -0.285 1.285 25 C 0.140 3.860 26 C 0.213 3.787 27 N -0.485 5.485 28 C 0.287 3.713 29 H 0.085 0.915 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.166 0.834 33 H 0.400 0.600 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.012 0.988 39 H 0.107 0.893 40 H 0.253 0.747 41 H 0.025 0.975 42 H 0.018 0.982 43 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.802 20.756 -7.574 23.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.181 5.181 3 N 0.029 4.971 4 N -0.076 5.076 5 C -0.200 4.200 6 C 0.053 3.947 7 C -0.214 4.214 8 C 0.353 3.647 9 O -0.410 6.410 10 N -0.368 5.368 11 C 0.009 3.991 12 C -0.135 4.135 13 H 0.096 0.904 14 C -0.174 4.174 15 C 0.027 3.973 16 N -0.331 5.331 17 C -0.352 4.352 18 H 0.094 0.906 19 C -0.206 4.206 20 N -0.571 5.571 21 Si 0.745 3.255 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.211 1.211 25 C 0.014 3.986 26 C 0.039 3.961 27 N -0.199 5.199 28 C 0.044 3.956 29 H 0.104 0.896 30 H 0.118 0.882 31 H 0.117 0.883 32 H 0.184 0.816 33 H 0.236 0.764 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.030 0.970 39 H 0.125 0.875 40 H 0.064 0.936 41 H 0.043 0.957 42 H 0.036 0.964 43 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -8.915 22.149 -7.466 25.015 hybrid contribution -0.368 -1.376 0.767 1.618 sum -9.282 20.773 -6.698 23.718 Atomic orbital electron populations 1.22121 0.71730 1.05658 1.04538 1.50015 1.08339 1.02405 1.57306 1.81779 0.94004 1.06263 1.15032 1.74888 1.11197 1.09989 1.11524 1.20380 0.94286 0.91432 1.13944 1.21078 0.99252 0.89518 0.84891 1.20802 0.95332 0.94332 1.10977 1.17667 0.87785 0.82244 0.77039 1.90814 1.20085 1.80277 1.49843 1.45983 1.11105 1.05291 1.74384 1.21555 0.88871 0.86059 1.02587 1.22463 0.99169 0.92706 0.99158 0.90438 1.23009 0.97091 0.97165 1.00172 1.21949 0.95389 0.92199 0.87804 1.44500 1.63180 1.06224 1.19157 1.19020 1.28534 0.93106 0.94589 0.90587 1.24789 1.00684 0.96712 0.98454 1.69783 1.42968 1.11111 1.33227 0.86154 0.78027 0.78919 0.82398 1.21231 1.21554 1.21143 1.21346 0.96262 0.88233 0.92723 1.23116 0.86402 0.98989 0.87599 1.66653 1.36809 0.98481 1.17942 1.19564 0.88945 0.89022 0.98100 0.89644 0.88194 0.88252 0.81604 0.76441 0.90770 0.91154 0.92061 0.91766 0.96964 0.87530 0.93645 0.95735 0.96371 0.80315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.46 11.54 59.85 0.69 1.15 16 2 N -0.38 -3.55 4.10 -67.18 -0.28 -3.82 16 3 N 0.01 0.11 13.71 60.35 0.83 0.94 16 4 N -0.20 -2.34 12.40 32.17 0.40 -1.94 16 5 C -0.07 -0.84 7.27 -84.74 -0.62 -1.45 16 6 C 0.08 0.85 9.75 -38.52 -0.38 0.48 16 7 C -0.21 -2.00 5.88 -104.87 -0.62 -2.62 16 8 C 0.57 6.67 7.77 -12.38 -0.10 6.58 16 9 O -0.53 -8.13 16.39 5.31 0.09 -8.04 16 10 N -0.72 -7.67 5.42 -61.28 -0.33 -8.00 16 11 C 0.13 1.71 5.02 -4.04 -0.02 1.69 16 12 C -0.12 -1.73 2.95 -88.79 -0.26 -1.99 16 13 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 14 C -0.14 -2.34 6.53 -24.58 -0.16 -2.50 16 15 C 0.15 3.50 5.89 -2.50 -0.01 3.49 16 16 N -0.60 -14.83 3.40 -170.04 -0.58 -15.40 16 17 C -0.22 -6.09 10.27 -15.06 -0.15 -6.24 16 18 H 0.08 1.99 7.83 -52.48 -0.41 1.58 16 19 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 20 N -0.92 -26.35 10.09 55.49 0.56 -25.79 16 21 Si 0.91 21.68 29.55 -169.99 -5.02 16.66 16 22 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 C 0.14 2.65 6.76 -3.07 -0.02 2.63 16 26 C 0.21 1.77 10.69 -17.09 -0.18 1.59 16 27 N -0.49 -4.71 10.37 -12.03 -0.12 -4.84 16 28 C 0.29 3.03 8.05 -155.93 -1.26 1.77 16 29 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.17 1.58 7.71 -52.48 -0.40 1.17 16 33 H 0.40 3.29 6.51 -40.82 -0.27 3.03 16 34 H 0.07 1.08 7.94 -51.93 -0.41 0.67 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.06 1.11 8.05 -51.93 -0.42 0.70 16 38 H 0.01 0.30 8.14 -51.92 -0.42 -0.12 16 39 H 0.11 2.81 5.88 -51.93 -0.31 2.51 16 40 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 41 H 0.02 0.47 7.69 -51.93 -0.40 0.07 16 42 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.18 0.94 6.39 -52.48 -0.34 0.60 16 LS Contribution 362.08 15.07 5.46 5.46 Total: -1.00 -33.97 362.08 -7.65 -41.62 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -5.47 Total: -1.01 kcal Atomic # 6 Polarization: 7.35 SS G_CDS: -3.18 Total: 4.17 kcal Atomic # 7 Polarization: -59.33 SS G_CDS: 0.48 Total: -58.85 kcal Atomic # 8 Polarization: -8.13 SS G_CDS: 0.09 Total: -8.04 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.97 -7.65 -41.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028694948.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.522 kcal (2) G-P(sol) polarization free energy of solvation -33.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds