Wall clock time and date at job start Tue Mar 31 2020 05:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40186 * 126.59095 * 2 1 4 4 N 1.28671 * 109.51073 * 180.02562 * 3 2 1 5 5 C 1.35329 * 109.99717 * 0.02562 * 4 3 2 6 6 C 1.39901 * 133.27005 * 180.02562 * 5 4 3 7 7 C 1.39425 * 118.10127 * 179.97438 * 6 5 4 8 8 C 1.47727 * 120.35383 * 180.02562 * 7 6 5 9 9 O 1.21561 * 119.99809 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99699 * 180.02562 * 8 7 6 11 11 C 1.46505 * 119.99638 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.47097 * 179.97438 * 11 10 8 13 13 H 1.09005 * 110.63669 * 51.85851 * 12 11 10 14 14 C 1.55156 * 110.71830 * 174.99627 * 12 11 10 15 15 C 1.54906 * 101.61451 * 154.02508 * 14 12 11 16 16 N 1.47471 * 104.81210 * 323.04512 * 15 14 12 17 17 C 1.36937 * 125.62509 * 204.14198 * 16 15 14 18 18 H 1.08004 * 119.99479 * 179.91598 * 17 16 15 19 19 C 1.38806 * 120.00537 * 359.91425 * 17 16 15 20 20 N 1.31628 * 120.00035 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00199 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47139 * 59.99880 * 21 19 17 23 23 H 1.48502 * 109.47021 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.46988 * 299.99649 * 21 19 17 25 25 C 1.47017 * 108.71970 * 24.07007 * 16 15 14 26 26 C 1.40123 * 119.29459 * 0.27409 * 7 6 5 27 27 N 1.31257 * 121.14935 * 359.44506 * 26 7 6 28 28 C 1.32720 * 121.79950 * 0.54938 * 27 26 7 29 29 H 1.09002 * 109.47344 * 89.96741 * 1 2 3 30 30 H 1.08998 * 109.47652 * 209.97038 * 1 2 3 31 31 H 1.09000 * 109.47264 * 329.96981 * 1 2 3 32 32 H 1.08006 * 120.94896 * 359.97438 * 6 5 4 33 33 H 0.97001 * 120.00552 * 359.97438 * 10 8 7 34 34 H 1.09006 * 109.47066 * 59.99373 * 11 10 8 35 35 H 1.09000 * 109.47236 * 299.99784 * 11 10 8 36 36 H 1.09002 * 111.00677 * 272.12092 * 14 12 11 37 37 H 1.09002 * 111.00564 * 35.93350 * 14 12 11 38 38 H 1.09008 * 110.36753 * 81.85112 * 15 14 12 39 39 H 1.09001 * 110.37094 * 204.16995 * 15 14 12 40 40 H 0.96994 * 120.00079 * 179.97438 * 20 19 17 41 41 H 1.08998 * 109.88206 * 239.55467 * 25 16 15 42 42 H 1.09007 * 109.88177 * 118.39340 * 25 16 15 43 43 H 1.08006 * 119.42227 * 179.72431 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3006 1.1256 0.0000 4 7 3.5306 0.7476 -0.0005 5 6 3.5995 -0.6039 -0.0015 6 6 4.6656 -1.5097 -0.0019 7 6 4.3697 -2.8722 -0.0024 8 6 5.4571 -3.8723 -0.0023 9 8 6.6171 -3.5088 -0.0022 10 7 5.1629 -5.1875 -0.0033 11 6 6.2412 -6.1793 -0.0026 12 6 5.6401 -7.5863 -0.0033 13 1 4.9104 -7.6919 -0.8062 14 6 6.7540 -8.6590 -0.1292 15 6 6.0872 -9.8819 0.5487 16 7 5.3100 -9.3159 1.6668 17 6 4.9399 -9.9873 2.8015 18 1 4.3698 -9.4813 3.5666 19 6 5.2975 -11.3181 2.9683 20 7 5.9918 -11.9350 2.0356 21 14 4.7920 -12.2342 4.5158 22 1 3.3110 -12.2444 4.6236 23 1 5.2927 -13.6307 4.4502 24 1 5.3701 -11.5558 5.7037 25 6 4.9998 -7.9114 1.3626 26 6 3.0301 -3.2829 -0.0083 27 7 2.0517 -2.4080 -0.0025 28 6 2.2823 -1.1009 -0.0016 29 1 -0.3634 0.0006 -1.0277 30 1 -0.3634 -0.8902 0.5133 31 1 -0.3634 0.8897 0.5143 32 1 5.6887 -1.1635 -0.0019 33 1 4.2372 -5.4776 -0.0037 34 1 6.8555 -6.0474 0.8881 35 1 6.8574 -6.0466 -0.8918 36 1 6.9798 -8.8669 -1.1751 37 1 7.6517 -8.3551 0.4091 38 1 5.4263 -10.3911 -0.1529 39 1 6.8463 -10.5689 0.9229 40 1 6.2420 -12.8648 2.1523 41 1 5.4197 -7.2639 2.1323 42 1 3.9199 -7.7737 1.3079 43 1 2.7985 -4.3379 -0.0132 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028694948.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:40 Heat of formation + Delta-G solvation = 99.822522 kcal Electronic energy + Delta-G solvation = -26859.155538 eV Core-core repulsion = 22941.664803 eV Total energy + Delta-G solvation = -3917.490734 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.53359 -41.17990 -39.57203 -39.00461 -36.16048 -35.96646 -34.35746 -33.35955 -32.24108 -31.34508 -29.79302 -28.71460 -27.39955 -26.22473 -25.51943 -24.55438 -22.63281 -22.33630 -21.72718 -21.15468 -19.71274 -19.10553 -18.74576 -18.18655 -17.63286 -17.24757 -17.06486 -16.63037 -16.39758 -15.95521 -15.57083 -15.12189 -14.89626 -14.71889 -14.39559 -14.30670 -14.19756 -14.05052 -13.97324 -13.67574 -13.47748 -13.33406 -13.08522 -12.81031 -12.78478 -12.62171 -12.09452 -12.02953 -11.87111 -11.76669 -11.54823 -11.41746 -11.23083 -10.72729 -10.68734 -10.49224 -10.25533 -9.96382 -8.82288 -7.73668 -5.16906 -0.98166 -0.57921 0.68061 0.85204 1.48799 1.51222 1.57511 1.62429 1.94148 2.49531 2.52688 2.60572 2.96190 3.06162 3.35897 3.37165 3.51547 3.64985 3.72438 3.87848 4.04760 4.11183 4.15836 4.30772 4.31196 4.53656 4.59823 4.61123 4.68285 4.72944 4.78952 4.88527 4.92272 5.00138 5.12037 5.21032 5.24814 5.35105 5.47606 5.53659 5.73072 5.88855 6.27429 6.37070 6.46305 6.58066 7.11012 7.15803 7.84808 8.47456 9.27898 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.019189 B = 0.002197 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.819861 B =12744.432585 C =13692.909385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.377 5.377 3 N -0.002 5.002 4 N -0.220 5.220 5 C -0.090 4.090 6 C 0.081 3.919 7 C -0.203 4.203 8 C 0.574 3.426 9 O -0.570 6.570 10 N -0.705 5.705 11 C 0.144 3.856 12 C -0.094 4.094 13 H 0.102 0.898 14 C -0.123 4.123 15 C 0.150 3.850 16 N -0.629 5.629 17 C -0.236 4.236 18 H 0.080 0.920 19 C -0.069 4.069 20 N -0.949 5.949 21 Si 0.976 3.024 22 H -0.278 1.278 23 H -0.296 1.296 24 H -0.279 1.279 25 C 0.134 3.866 26 C 0.225 3.775 27 N -0.488 5.488 28 C 0.277 3.723 29 H 0.102 0.898 30 H 0.110 0.890 31 H 0.118 0.882 32 H 0.166 0.834 33 H 0.415 0.585 34 H 0.058 0.942 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.061 0.939 38 H -0.009 1.009 39 H 0.068 0.932 40 H 0.246 0.754 41 H 0.022 0.978 42 H 0.034 0.966 43 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.525 21.606 -8.011 25.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.173 5.173 3 N 0.017 4.983 4 N -0.099 5.099 5 C -0.217 4.217 6 C 0.050 3.950 7 C -0.212 4.212 8 C 0.360 3.640 9 O -0.450 6.450 10 N -0.357 5.357 11 C 0.020 3.980 12 C -0.113 4.113 13 H 0.121 0.879 14 C -0.162 4.162 15 C 0.025 3.975 16 N -0.355 5.355 17 C -0.365 4.365 18 H 0.098 0.902 19 C -0.262 4.262 20 N -0.599 5.599 21 Si 0.805 3.195 22 H -0.204 1.204 23 H -0.222 1.222 24 H -0.205 1.205 25 C 0.009 3.991 26 C 0.050 3.950 27 N -0.202 5.202 28 C 0.033 3.967 29 H 0.121 0.879 30 H 0.128 0.872 31 H 0.136 0.864 32 H 0.184 0.816 33 H 0.253 0.747 34 H 0.076 0.924 35 H 0.100 0.900 36 H 0.108 0.892 37 H 0.080 0.920 38 H 0.009 0.991 39 H 0.086 0.914 40 H 0.055 0.945 41 H 0.040 0.960 42 H 0.052 0.948 43 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -10.695 23.050 -7.908 26.612 hybrid contribution 0.100 -1.617 0.905 1.856 sum -10.595 21.433 -7.002 24.913 Atomic orbital electron populations 1.22544 0.69233 1.07120 1.06115 1.50378 1.09606 1.01596 1.55716 1.81698 0.94064 1.07064 1.15457 1.74853 1.11855 1.10614 1.12613 1.20552 0.95010 0.91371 1.14733 1.21144 0.99242 0.89865 0.84728 1.20612 0.95429 0.93474 1.11671 1.17808 0.87551 0.82531 0.76101 1.90806 1.21743 1.80850 1.51640 1.45787 1.11483 1.04623 1.73789 1.21287 0.89114 0.85152 1.02452 1.22304 0.98404 0.93011 0.97574 0.87949 1.22841 0.97177 0.95132 1.01065 1.21742 0.94174 0.94084 0.87467 1.44828 1.63500 1.08441 1.18776 1.19409 1.27889 0.93569 0.95659 0.90191 1.25598 1.01418 0.97789 1.01347 1.70051 1.44253 1.10780 1.34830 0.85178 0.77896 0.77202 0.79219 1.20365 1.22175 1.20543 1.21575 0.97454 0.85221 0.94810 1.23613 0.85381 1.00217 0.85771 1.66780 1.36932 0.98057 1.18392 1.19791 0.88991 0.89640 0.98276 0.87949 0.87182 0.86386 0.81646 0.74698 0.92393 0.90004 0.89229 0.91984 0.99111 0.91428 0.94460 0.95983 0.94760 0.76987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.61 11.54 127.77 1.47 2.08 16 2 N -0.38 -6.39 4.10 -366.45 -1.50 -7.89 16 3 N 0.00 -0.03 13.71 37.02 0.51 0.47 16 4 N -0.22 -5.23 12.40 -52.15 -0.65 -5.88 16 5 C -0.09 -1.96 7.27 39.63 0.29 -1.67 16 6 C 0.08 1.60 9.75 22.96 0.22 1.82 16 7 C -0.20 -3.55 5.88 -20.03 -0.12 -3.67 16 8 C 0.57 12.25 7.77 86.75 0.67 12.92 16 9 O -0.57 -16.71 16.39 -3.91 -0.06 -16.78 16 10 N -0.70 -12.81 5.42 -466.08 -2.53 -15.34 16 11 C 0.14 3.29 5.02 86.38 0.43 3.72 16 12 C -0.09 -2.52 2.95 -9.61 -0.03 -2.55 16 13 H 0.10 2.33 8.14 -2.38 -0.02 2.31 16 14 C -0.12 -4.04 6.53 31.98 0.21 -3.83 16 15 C 0.15 7.00 5.89 86.85 0.51 7.52 16 16 N -0.63 -30.69 3.40 -691.89 -2.35 -33.04 16 17 C -0.24 -12.84 10.27 84.03 0.86 -11.98 16 18 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 19 C -0.07 -3.85 5.49 84.86 0.47 -3.39 16 20 N -0.95 -55.68 10.09 21.65 0.22 -55.46 16 21 Si 0.98 44.91 29.55 68.60 2.03 46.93 16 22 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 23 H -0.30 -13.73 7.11 99.48 0.71 -13.03 16 24 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 25 C 0.13 4.79 6.76 86.73 0.59 5.38 16 26 C 0.22 3.05 10.69 85.24 0.91 3.96 16 27 N -0.49 -8.24 10.37 -191.97 -1.99 -10.23 16 28 C 0.28 5.41 8.05 134.01 1.08 6.49 16 29 H 0.10 0.39 8.14 -2.39 -0.02 0.38 16 30 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.12 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.17 3.17 7.71 -2.91 -0.02 3.15 16 33 H 0.41 5.06 6.51 -92.71 -0.60 4.46 16 34 H 0.06 1.57 7.94 -2.38 -0.02 1.55 16 35 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 37 H 0.06 2.07 8.05 -2.39 -0.02 2.05 16 38 H -0.01 -0.45 8.14 -2.38 -0.02 -0.47 16 39 H 0.07 3.69 5.88 -2.39 -0.01 3.68 16 40 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 41 H 0.02 0.81 7.69 -2.39 -0.02 0.79 16 42 H 0.03 1.13 8.14 -2.38 -0.02 1.11 16 43 H 0.21 1.27 6.39 -2.91 -0.02 1.26 16 Total: -1.00 -75.65 362.08 1.70 -73.94 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: 0.46 Total: 6.46 kcal Atomic # 6 Polarization: 9.24 SS G_CDS: 7.57 Total: 16.81 kcal Atomic # 7 Polarization: -119.07 SS G_CDS: -8.29 Total: -127.36 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: -0.06 Total: -16.78 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Total: -75.65 1.70 -73.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028694948.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.764 kcal (2) G-P(sol) polarization free energy of solvation -75.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds