Wall clock time and date at job start Tue Mar 31 2020 05:30:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.28781 * 125.86599 * 2 1 4 4 N 1.28692 * 111.75969 * 180.02562 * 3 2 1 5 5 C 1.34391 * 109.15011 * 359.97438 * 4 3 2 6 6 C 1.37210 * 125.87110 * 179.69033 * 2 1 3 7 7 N 1.32201 * 134.67024 * 359.97438 * 6 2 1 8 8 C 1.31588 * 121.86654 * 180.02562 * 7 6 2 9 9 C 1.38618 * 121.63244 * 359.97438 * 8 7 6 10 10 C 1.39464 * 119.37862 * 359.66155 * 9 8 7 11 11 C 1.47878 * 121.11192 * 179.84837 * 10 9 8 12 12 O 1.21545 * 119.99587 * 180.72248 * 11 10 9 13 13 N 1.34770 * 120.00020 * 0.71682 * 11 10 9 14 14 C 1.46503 * 119.99718 * 179.97438 * 13 11 10 15 15 C 1.53004 * 109.46703 * 180.02562 * 14 13 11 16 16 H 1.08999 * 110.64275 * 305.69579 * 15 14 13 17 17 C 1.55165 * 110.71668 * 182.56081 * 15 14 13 18 18 C 1.54913 * 101.57912 * 206.13114 * 17 15 14 19 19 N 1.47423 * 104.82909 * 37.01407 * 18 17 15 20 20 C 1.36936 * 125.64420 * 155.90623 * 19 18 17 21 21 H 1.07996 * 120.00403 * 342.04683 * 20 19 18 22 22 C 1.38819 * 119.99999 * 162.04756 * 20 19 18 23 23 N 1.31611 * 120.00294 * 156.24230 * 22 20 19 24 24 Si 1.86805 * 119.99886 * 336.24264 * 22 20 19 25 25 H 1.48497 * 109.47171 * 84.66453 * 24 22 20 26 26 H 1.48499 * 109.47281 * 204.67119 * 24 22 20 27 27 H 1.48501 * 109.46929 * 324.66772 * 24 22 20 28 28 C 1.47318 * 108.73967 * 335.70793 * 19 18 17 29 29 H 1.08999 * 109.46919 * 90.02828 * 1 2 3 30 30 H 1.09001 * 109.46644 * 210.02625 * 1 2 3 31 31 H 1.08994 * 109.47358 * 330.02381 * 1 2 3 32 32 H 1.07993 * 119.18320 * 180.02562 * 8 7 6 33 33 H 1.08002 * 120.31058 * 179.97438 * 9 8 7 34 34 H 0.97001 * 120.00263 * 0.02562 * 13 11 10 35 35 H 1.09003 * 109.47113 * 299.99886 * 14 13 11 36 36 H 1.08998 * 109.46984 * 60.00787 * 14 13 11 37 37 H 1.08998 * 111.00458 * 324.20683 * 17 15 14 38 38 H 1.08999 * 111.00392 * 88.01854 * 17 15 14 39 39 H 1.09000 * 110.35904 * 155.84851 * 18 17 15 40 40 H 1.08996 * 110.36471 * 278.05937 * 18 17 15 41 41 H 0.97001 * 120.00203 * 180.02562 * 23 22 20 42 42 H 1.08996 * 110.06733 * 241.88275 * 28 19 18 43 43 H 1.09001 * 109.84803 * 120.61351 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2196 1.0436 0.0000 4 7 3.4677 0.7300 -0.0005 5 6 3.5858 -0.6087 -0.0004 6 6 2.2690 -1.1118 0.0060 7 7 2.0518 -2.4159 0.0135 8 6 3.0400 -3.2848 0.0185 9 6 4.3653 -2.8785 0.0158 10 6 4.6633 -1.5162 0.0003 11 6 6.0633 -1.0402 0.0002 12 8 6.2998 0.1520 -0.0003 13 7 7.0770 -1.9283 0.0006 14 6 8.4640 -1.4567 0.0000 15 6 9.4112 -2.6583 0.0000 16 1 9.1820 -3.3282 0.8287 17 6 10.8897 -2.1918 0.0642 18 6 11.6199 -3.3790 -0.6119 19 7 10.7137 -3.8148 -1.6900 20 6 11.0866 -4.4884 -2.8224 21 1 12.1213 -4.4934 -3.1318 22 6 10.1346 -5.1650 -3.5727 23 7 10.3516 -5.4061 -4.8482 24 14 8.5455 -5.7334 -2.7720 25 1 7.5626 -4.6203 -2.7779 26 1 7.9937 -6.8852 -3.5296 27 1 8.8170 -6.1465 -1.3716 28 6 9.3397 -3.4101 -1.3458 29 1 -0.3633 -0.0005 -1.0277 30 1 -0.3632 -0.8898 0.5143 31 1 -0.3634 0.8901 0.5134 32 1 2.8128 -4.3405 0.0242 33 1 5.1597 -3.6102 0.0205 34 1 6.8883 -2.8798 0.0007 35 1 8.6424 -0.8539 -0.8906 36 1 8.6428 -0.8527 0.8895 37 1 11.0338 -1.2712 -0.5014 38 1 11.2160 -2.0685 1.0968 39 1 12.5731 -3.0512 -1.0269 40 1 11.7760 -4.1857 0.1042 41 1 9.6863 -5.8786 -5.3726 42 1 8.7046 -4.2902 -1.2453 43 1 8.9436 -2.7507 -2.1181 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028763167.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:44 Heat of formation + Delta-G solvation = 138.972814 kcal Electronic energy + Delta-G solvation = -27685.762633 eV Core-core repulsion = 23769.969583 eV Total energy + Delta-G solvation = -3915.793050 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.68322 -40.21216 -38.98790 -37.98376 -35.38476 -34.84203 -33.03660 -32.37670 -31.16457 -30.41743 -28.77114 -28.34018 -26.40851 -25.37183 -24.08502 -23.73862 -22.42547 -20.80471 -20.34893 -20.04547 -19.12663 -18.13601 -17.72796 -17.33151 -16.96126 -16.30661 -15.84860 -15.63355 -15.17199 -15.03697 -14.51844 -14.16023 -14.03521 -13.63351 -13.52996 -13.39905 -13.31024 -13.10767 -12.83681 -12.56368 -12.52367 -12.02219 -11.83540 -11.62870 -11.40231 -11.34694 -11.00492 -10.77323 -10.62257 -10.42497 -10.26234 -9.91414 -9.77120 -9.59836 -9.39910 -9.33339 -9.06386 -8.66977 -7.10612 -5.98292 -3.26660 -0.28546 0.50913 1.53769 1.89572 2.60640 2.84501 3.24749 3.27688 3.36268 3.37390 3.43780 3.85372 3.97332 4.16438 4.22353 4.49731 4.53709 4.55235 4.77318 4.83308 4.87487 4.98346 5.02408 5.12983 5.19937 5.21529 5.38053 5.42428 5.58606 5.75695 5.76922 5.83478 5.97919 5.98916 6.04263 6.23687 6.26881 6.40876 6.55655 6.69259 6.75674 7.10107 7.33268 7.67484 7.90488 8.04488 8.28058 8.80063 9.65404 10.14234 11.18395 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.016537 B = 0.003086 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.799956 B = 9070.004533 C =10135.860028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.311 5.311 3 N -0.006 5.006 4 N -0.214 5.214 5 C 0.004 3.996 6 C 0.209 3.791 7 N -0.457 5.457 8 C 0.161 3.839 9 C -0.141 4.141 10 C -0.008 4.008 11 C 0.551 3.449 12 O -0.501 6.501 13 N -0.718 5.718 14 C 0.132 3.868 15 C -0.117 4.117 16 H 0.081 0.919 17 C -0.121 4.121 18 C 0.132 3.868 19 N -0.610 5.610 20 C -0.242 4.242 21 H 0.093 0.907 22 C 0.019 3.981 23 N -0.906 5.906 24 Si 0.886 3.114 25 H -0.286 1.286 26 H -0.304 1.304 27 H -0.279 1.279 28 C 0.123 3.877 29 H 0.091 0.909 30 H 0.102 0.898 31 H 0.104 0.896 32 H 0.184 0.816 33 H 0.158 0.842 34 H 0.400 0.600 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.051 0.949 40 H 0.025 0.975 41 H 0.263 0.737 42 H 0.023 0.977 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.661 5.475 14.187 24.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.112 5.112 3 N 0.013 4.987 4 N -0.088 5.088 5 C -0.126 4.126 6 C -0.033 4.033 7 N -0.170 5.170 8 C -0.012 4.012 9 C -0.165 4.165 10 C -0.024 4.024 11 C 0.335 3.665 12 O -0.375 6.375 13 N -0.370 5.370 14 C 0.009 3.991 15 C -0.136 4.136 16 H 0.100 0.900 17 C -0.160 4.160 18 C 0.007 3.993 19 N -0.337 5.337 20 C -0.369 4.369 21 H 0.111 0.889 22 C -0.179 4.179 23 N -0.550 5.550 24 Si 0.718 3.282 25 H -0.213 1.213 26 H -0.232 1.232 27 H -0.206 1.206 28 C -0.001 4.001 29 H 0.110 0.890 30 H 0.121 0.879 31 H 0.123 0.877 32 H 0.201 0.799 33 H 0.176 0.824 34 H 0.236 0.764 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.069 0.931 40 H 0.043 0.957 41 H 0.073 0.927 42 H 0.041 0.959 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -19.425 7.622 13.936 25.092 hybrid contribution -0.528 -1.909 0.243 1.995 sum -19.952 5.713 14.180 25.136 Atomic orbital electron populations 1.22295 0.71298 1.06102 1.05239 1.47037 1.09163 1.01981 1.53063 1.78271 0.97130 1.11025 1.12312 1.75569 1.06430 1.10666 1.16152 1.20093 0.93196 0.92406 1.06877 1.19797 0.88468 0.89484 1.05582 1.66279 1.37768 0.99033 1.13955 1.22847 0.86783 0.99053 0.92514 1.22470 0.99434 0.94694 0.99902 1.19691 0.92761 0.91858 0.98130 1.17847 0.83963 0.86448 0.78260 1.90872 1.84346 1.15117 1.47199 1.45945 1.06528 1.09806 1.74745 1.21507 0.78245 0.96450 1.02867 1.22476 0.95691 0.96206 0.99237 0.90041 1.22733 0.93251 0.99564 1.00446 1.21616 0.94143 0.93419 0.90132 1.44852 1.01692 1.66430 1.20707 1.18680 0.96301 1.25057 0.96894 0.88939 1.24978 0.97778 0.99618 0.95551 1.69857 1.36220 1.43801 1.05113 0.86880 0.84658 0.77888 0.78786 1.21307 1.23223 1.20626 1.21776 0.89003 0.95898 0.93459 0.89005 0.87914 0.87739 0.79919 0.82416 0.76434 0.90510 0.90861 0.90799 0.91148 0.93118 0.95732 0.92713 0.95941 0.93868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.46 11.41 59.85 0.68 1.15 16 2 N -0.31 -3.37 3.80 -67.23 -0.26 -3.62 16 3 N -0.01 -0.08 13.07 60.35 0.79 0.71 16 4 N -0.21 -3.48 11.92 32.23 0.38 -3.10 16 5 C 0.00 0.06 6.97 -84.72 -0.59 -0.53 16 6 C 0.21 2.56 8.08 -156.21 -1.26 1.30 16 7 N -0.46 -4.74 10.35 -12.39 -0.13 -4.87 16 8 C 0.16 1.29 11.14 -17.52 -0.20 1.10 16 9 C -0.14 -1.30 9.61 -38.98 -0.37 -1.67 16 10 C -0.01 -0.10 5.93 -104.50 -0.62 -0.72 16 11 C 0.55 8.29 7.79 -12.32 -0.10 8.20 16 12 O -0.50 -9.38 16.27 5.33 0.09 -9.29 16 13 N -0.72 -9.48 5.39 -61.24 -0.33 -9.81 16 14 C 0.13 1.84 5.00 -4.04 -0.02 1.82 16 15 C -0.12 -1.74 2.98 -88.78 -0.26 -2.00 16 16 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 17 C -0.12 -1.76 6.54 -24.58 -0.16 -1.92 16 18 C 0.13 2.46 7.23 -2.53 -0.02 2.44 16 19 N -0.61 -14.26 3.22 -169.84 -0.55 -14.81 16 20 C -0.24 -6.77 10.56 -15.06 -0.16 -6.93 16 21 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 22 C 0.02 0.55 5.43 -17.43 -0.09 0.46 16 23 N -0.91 -27.72 13.97 55.49 0.78 -26.94 16 24 Si 0.89 21.61 24.39 -169.99 -4.15 17.47 16 25 H -0.29 -6.55 6.83 56.52 0.39 -6.16 16 26 H -0.30 -7.56 7.11 56.52 0.40 -7.16 16 27 H -0.28 -6.59 6.87 56.52 0.39 -6.20 16 28 C 0.12 2.50 4.55 -2.90 -0.01 2.49 16 29 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.10 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.18 0.72 8.06 -52.49 -0.42 0.30 16 33 H 0.16 1.02 6.53 -52.49 -0.34 0.67 16 34 H 0.40 4.44 6.55 -40.82 -0.27 4.17 16 35 H 0.08 1.19 8.00 -51.93 -0.42 0.78 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.07 1.07 8.05 -51.93 -0.42 0.65 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 42 H 0.02 0.49 3.55 -51.93 -0.18 0.30 16 43 H 0.04 0.95 7.73 -51.93 -0.40 0.55 16 LS Contribution 356.37 15.07 5.37 5.37 Total: -1.00 -37.72 356.37 -6.61 -44.33 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -5.42 Total: -0.61 kcal Atomic # 6 Polarization: 8.35 SS G_CDS: -3.19 Total: 5.17 kcal Atomic # 7 Polarization: -63.12 SS G_CDS: 0.69 Total: -62.43 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: 0.09 Total: -9.29 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.15 Total: 17.47 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -37.72 -6.61 -44.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028763167.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.298 kcal (2) G-P(sol) polarization free energy of solvation -37.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds