Wall clock time and date at job start Tue Mar 31 2020 05:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.28779 * 125.86984 * 2 1 4 4 N 1.28697 * 111.75752 * 179.97438 * 3 2 1 5 5 C 1.34394 * 109.15325 * 0.02562 * 4 3 2 6 6 C 1.37210 * 125.86702 * 180.02562 * 2 1 3 7 7 N 1.32216 * 134.67431 * 359.97419 * 6 2 1 8 8 C 1.31582 * 121.86499 * 180.02562 * 7 6 2 9 9 C 1.38622 * 121.63988 * 359.67743 * 8 7 6 10 10 C 1.39451 * 119.37074 * 0.62079 * 9 8 7 11 11 C 1.47873 * 121.11423 * 179.69416 * 10 9 8 12 12 O 1.21548 * 120.00214 * 179.71584 * 11 10 9 13 13 N 1.34773 * 120.00027 * 359.71496 * 11 10 9 14 14 C 1.46504 * 120.00257 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47171 * 180.02562 * 14 13 11 16 16 H 1.09004 * 110.91254 * 57.45208 * 15 14 13 17 17 C 1.55164 * 111.00283 * 181.35255 * 15 14 13 18 18 C 1.54322 * 102.93965 * 153.57810 * 17 15 14 19 19 N 1.47020 * 107.27467 * 337.80777 * 18 17 15 20 20 C 1.36939 * 125.65087 * 179.20508 * 19 18 17 21 21 H 1.07997 * 119.99591 * 174.35340 * 20 19 18 22 22 C 1.38813 * 119.99732 * 354.35924 * 20 19 18 23 23 N 1.31615 * 120.00275 * 7.02877 * 22 20 19 24 24 Si 1.86799 * 119.99623 * 187.02776 * 22 20 19 25 25 H 1.48500 * 109.47076 * 94.98809 * 24 22 20 26 26 H 1.48498 * 109.46809 * 214.98525 * 24 22 20 27 27 H 1.48499 * 109.47087 * 334.98434 * 24 22 20 28 28 C 1.47429 * 108.70230 * 358.93934 * 19 18 17 29 29 H 1.09003 * 109.46855 * 269.99685 * 1 2 3 30 30 H 1.09003 * 109.47290 * 29.99118 * 1 2 3 31 31 H 1.08996 * 109.47567 * 150.00174 * 1 2 3 32 32 H 1.08000 * 119.17805 * 179.97438 * 8 7 6 33 33 H 1.07992 * 120.31341 * 180.33408 * 9 8 7 34 34 H 0.96996 * 120.00262 * 0.02562 * 13 11 10 35 35 H 1.09005 * 109.46528 * 60.00507 * 14 13 11 36 36 H 1.08999 * 109.47234 * 300.00544 * 14 13 11 37 37 H 1.08996 * 110.71724 * 271.94416 * 17 15 14 38 38 H 1.08993 * 110.71742 * 35.04068 * 17 15 14 39 39 H 1.09000 * 109.88266 * 218.38951 * 18 17 15 40 40 H 1.09003 * 109.88108 * 97.22299 * 18 17 15 41 41 H 0.96992 * 120.00186 * 180.02562 * 23 22 20 42 42 H 1.09002 * 110.36346 * 142.96798 * 28 19 18 43 43 H 1.08999 * 110.37028 * 265.18056 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2195 1.0436 0.0000 4 7 3.4677 0.7298 0.0005 5 6 3.5857 -0.6090 0.0004 6 6 2.2689 -1.1119 -0.0005 7 7 2.0516 -2.4161 -0.0007 8 6 3.0398 -3.2850 -0.0007 9 6 4.3651 -2.8788 -0.0072 10 6 4.6631 -1.5165 -0.0007 11 6 6.0631 -1.0406 -0.0005 12 8 6.2997 0.1517 0.0000 13 7 7.0768 -1.9287 -0.0009 14 6 8.4639 -1.4571 -0.0012 15 6 9.4110 -2.6587 -0.0022 16 1 9.2213 -3.3030 -0.8608 17 6 10.8926 -2.1990 0.0315 18 6 11.6099 -3.3930 0.6959 19 7 10.5995 -4.1388 1.4603 20 6 10.8273 -5.2784 2.1847 21 1 10.0375 -5.7023 2.7870 22 6 12.0735 -5.8886 2.1447 23 7 13.0746 -5.3007 1.5246 24 14 12.3296 -7.5442 2.9711 25 1 12.1598 -8.6284 1.9707 26 1 13.6997 -7.6063 3.5406 27 1 11.3332 -7.7138 4.0590 28 6 9.3016 -3.4531 1.3231 29 1 -0.3633 -0.0001 1.0277 30 1 -0.3634 0.8901 -0.5137 31 1 -0.3634 -0.8899 -0.5138 32 1 2.8125 -4.3408 -0.0004 33 1 5.1594 -3.6105 -0.0125 34 1 6.8881 -2.8801 -0.0016 35 1 8.6427 -0.8538 0.8888 36 1 8.6422 -0.8536 -0.8912 37 1 11.2690 -2.0363 -0.9784 38 1 11.0027 -1.2965 0.6326 39 1 12.3892 -3.0309 1.3665 40 1 12.0453 -4.0361 -0.0689 41 1 13.9452 -5.7273 1.4964 42 1 8.4925 -4.1810 1.2635 43 1 9.1401 -2.7753 2.1614 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028763168.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:47 Heat of formation + Delta-G solvation = 130.669869 kcal Electronic energy + Delta-G solvation = -27174.465760 eV Core-core repulsion = 23258.312667 eV Total energy + Delta-G solvation = -3916.153093 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.69417 -40.18654 -38.94470 -37.65088 -35.38914 -34.77297 -33.04651 -32.25832 -31.16729 -29.82945 -28.44423 -28.26774 -26.19456 -25.33171 -24.10006 -23.68960 -22.35833 -20.71077 -20.00833 -19.82516 -19.11598 -18.12235 -17.73530 -17.34365 -16.79828 -16.05294 -15.61428 -15.45995 -15.05366 -14.74892 -14.59689 -14.15823 -14.01412 -13.72123 -13.50054 -13.39031 -13.14138 -13.05333 -12.57377 -12.37516 -12.06627 -11.84832 -11.77482 -11.45914 -11.36008 -10.92713 -10.83212 -10.58985 -10.32685 -10.14180 -10.01965 -9.89335 -9.72242 -9.69238 -9.60982 -9.34432 -9.02204 -8.60103 -6.85731 -5.75160 -3.07768 -0.29132 0.49923 1.52596 1.88573 2.61210 2.87326 3.27246 3.36114 3.37737 3.42857 3.45312 3.84546 3.96798 4.17520 4.21030 4.46661 4.53192 4.54501 4.82099 4.87189 5.02648 5.15110 5.18659 5.20811 5.36980 5.41578 5.50435 5.65871 5.74895 5.85856 5.96870 6.01440 6.02820 6.31399 6.33715 6.45333 6.51372 6.64102 6.87381 7.09066 7.38633 7.53222 7.61857 7.80345 7.89431 8.07907 8.23391 9.18978 9.79738 10.46096 11.36952 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.022230 B = 0.002311 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.274378 B =12111.849182 C =13121.364759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.311 5.311 3 N -0.007 5.007 4 N -0.214 5.214 5 C 0.003 3.997 6 C 0.208 3.792 7 N -0.458 5.458 8 C 0.160 3.840 9 C -0.141 4.141 10 C -0.007 4.007 11 C 0.548 3.452 12 O -0.504 6.504 13 N -0.714 5.714 14 C 0.133 3.867 15 C -0.118 4.118 16 H 0.081 0.919 17 C -0.134 4.134 18 C 0.176 3.824 19 N -0.606 5.606 20 C -0.231 4.231 21 H 0.078 0.922 22 C -0.007 4.007 23 N -0.919 5.919 24 Si 0.910 3.090 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.281 1.281 28 C 0.141 3.859 29 H 0.091 0.909 30 H 0.104 0.896 31 H 0.102 0.898 32 H 0.184 0.816 33 H 0.160 0.840 34 H 0.401 0.599 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.041 0.959 40 H 0.049 0.951 41 H 0.252 0.748 42 H 0.036 0.964 43 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.312 5.582 -5.980 25.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.113 5.113 3 N 0.012 4.988 4 N -0.088 5.088 5 C -0.127 4.127 6 C -0.034 4.034 7 N -0.172 5.172 8 C -0.012 4.012 9 C -0.164 4.164 10 C -0.024 4.024 11 C 0.332 3.668 12 O -0.378 6.378 13 N -0.367 5.367 14 C 0.010 3.990 15 C -0.138 4.138 16 H 0.099 0.901 17 C -0.173 4.173 18 C 0.051 3.949 19 N -0.332 5.332 20 C -0.359 4.359 21 H 0.095 0.905 22 C -0.204 4.204 23 N -0.566 5.566 24 Si 0.741 3.259 25 H -0.216 1.216 26 H -0.218 1.218 27 H -0.206 1.206 28 C 0.015 3.985 29 H 0.110 0.890 30 H 0.123 0.877 31 H 0.121 0.879 32 H 0.200 0.800 33 H 0.178 0.822 34 H 0.237 0.763 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.059 0.941 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.054 0.946 43 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -24.872 7.701 -5.924 26.702 hybrid contribution 0.695 -2.234 0.480 2.388 sum -24.177 5.467 -5.444 25.378 Atomic orbital electron populations 1.22291 0.71330 1.06115 1.05204 1.47036 1.09155 1.02008 1.53055 1.78279 0.97143 1.11040 1.12369 1.75575 1.06412 1.10720 1.16110 1.20120 0.93233 0.92401 1.06914 1.19802 0.88470 0.89477 1.05610 1.66283 1.37831 0.99032 1.14016 1.22855 0.86841 0.99021 0.92526 1.22469 0.99389 0.94659 0.99910 1.19718 0.92786 0.91870 0.98019 1.17872 0.83980 0.86501 0.78397 1.90876 1.84353 1.15240 1.47329 1.45958 1.06498 1.09780 1.74462 1.21484 0.78238 0.96854 1.02456 1.22627 0.95343 0.95666 1.00157 0.90063 1.22855 0.93688 1.00153 1.00642 1.21164 0.90397 0.88926 0.94393 1.44485 1.02994 1.27842 1.57929 1.19044 0.97051 0.99036 1.20757 0.90458 1.24831 0.95931 0.98938 1.00665 1.69973 1.01075 1.37860 1.47716 0.86125 0.77194 0.83979 0.78636 1.21611 1.21780 1.20646 1.21579 0.90005 0.93846 0.93064 0.89036 0.87747 0.87915 0.79954 0.82207 0.76324 0.90950 0.91252 0.91911 0.92136 0.94107 0.93319 0.93720 0.94623 0.96302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.41 11.41 59.84 0.68 1.09 16 2 N -0.31 -3.16 3.79 -67.23 -0.26 -3.42 16 3 N -0.01 -0.09 13.07 60.35 0.79 0.70 16 4 N -0.21 -3.34 11.92 32.24 0.38 -2.96 16 5 C 0.00 0.04 6.97 -84.72 -0.59 -0.55 16 6 C 0.21 2.38 8.08 -156.20 -1.26 1.12 16 7 N -0.46 -4.31 10.35 -12.38 -0.13 -4.44 16 8 C 0.16 1.09 11.14 -17.52 -0.20 0.89 16 9 C -0.14 -1.07 9.61 -38.99 -0.37 -1.45 16 10 C -0.01 -0.09 5.92 -104.51 -0.62 -0.71 16 11 C 0.55 7.72 7.79 -12.32 -0.10 7.63 16 12 O -0.50 -9.15 16.27 5.32 0.09 -9.06 16 13 N -0.71 -8.61 5.37 -61.24 -0.33 -8.94 16 14 C 0.13 1.82 5.12 -4.04 -0.02 1.80 16 15 C -0.12 -1.84 3.10 -88.47 -0.27 -2.11 16 16 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 17 C -0.13 -2.36 6.42 -24.89 -0.16 -2.52 16 18 C 0.18 4.13 5.38 -3.07 -0.02 4.12 16 19 N -0.61 -14.90 3.39 -170.07 -0.58 -15.48 16 20 C -0.23 -6.25 10.26 -15.06 -0.15 -6.41 16 21 H 0.08 2.01 7.84 -52.49 -0.41 1.60 16 22 C -0.01 -0.20 5.48 -17.43 -0.10 -0.29 16 23 N -0.92 -26.60 10.36 55.49 0.57 -26.02 16 24 Si 0.91 21.62 29.56 -169.99 -5.02 16.59 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 27 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 28 C 0.14 2.68 6.41 -2.53 -0.02 2.66 16 29 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.10 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.18 0.49 8.06 -52.49 -0.42 0.07 16 33 H 0.16 0.73 6.53 -52.49 -0.34 0.38 16 34 H 0.40 3.78 6.48 -40.82 -0.26 3.51 16 35 H 0.07 1.08 8.10 -51.93 -0.42 0.66 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.06 1.01 8.04 -51.93 -0.42 0.60 16 39 H 0.04 1.07 7.62 -51.93 -0.40 0.68 16 40 H 0.05 1.27 7.29 -51.93 -0.38 0.89 16 41 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 42 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.02 0.37 8.01 -51.93 -0.42 -0.04 16 LS Contribution 361.79 15.07 5.45 5.45 Total: -1.00 -36.82 361.79 -7.78 -44.61 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: -5.56 Total: -2.32 kcal Atomic # 6 Polarization: 8.47 SS G_CDS: -3.19 Total: 5.28 kcal Atomic # 7 Polarization: -61.00 SS G_CDS: 0.46 Total: -60.54 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: 0.09 Total: -9.06 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -36.82 -7.78 -44.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028763168.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.277 kcal (2) G-P(sol) polarization free energy of solvation -36.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds