Wall clock time and date at job start Tue Mar 31 2020 05:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.32439 * 125.18529 * 2 1 4 4 C 1.32882 * 109.81021 * 180.26422 * 3 2 1 5 5 N 1.33737 * 132.44205 * 180.02562 * 4 3 2 6 6 C 1.31204 * 121.19469 * 179.97438 * 5 4 3 7 7 C 1.40097 * 120.45273 * 0.02562 * 6 5 4 8 8 C 1.36994 * 119.05825 * 0.02562 * 7 6 5 9 9 C 1.47706 * 120.63929 * 180.02562 * 8 7 6 10 10 O 1.21557 * 120.00079 * 359.95034 * 9 8 7 11 11 N 1.34782 * 120.00176 * 179.97438 * 9 8 7 12 12 C 1.46497 * 119.99885 * 180.02562 * 11 9 8 13 13 C 1.53000 * 109.47186 * 180.02562 * 12 11 9 14 14 H 1.08999 * 110.88780 * 54.29704 * 13 12 11 15 15 C 1.55152 * 111.00912 * 178.18255 * 13 12 11 16 16 C 1.54319 * 102.94607 * 153.57553 * 15 13 12 17 17 N 1.47025 * 107.27205 * 337.80514 * 16 15 13 18 18 C 1.36929 * 125.65239 * 178.97888 * 17 16 15 19 19 H 1.07999 * 120.00227 * 179.97438 * 18 17 16 20 20 C 1.38813 * 119.99639 * 359.96997 * 18 17 16 21 21 N 1.31621 * 120.00364 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99789 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46947 * 60.00792 * 22 20 18 24 24 H 1.48503 * 109.47216 * 180.02562 * 22 20 18 25 25 H 1.48489 * 109.47494 * 300.00486 * 22 20 18 26 26 C 1.47469 * 108.71816 * 358.97502 * 17 16 15 27 27 N 1.36684 * 107.17953 * 359.97438 * 4 3 2 28 28 N 1.31364 * 125.18147 * 180.29757 * 2 1 3 29 29 H 1.08995 * 109.46903 * 269.70305 * 1 2 3 30 30 H 1.08994 * 109.46774 * 29.70092 * 1 2 3 31 31 H 1.09000 * 109.47223 * 149.70120 * 1 2 3 32 32 H 1.08006 * 119.77077 * 179.97438 * 6 5 4 33 33 H 1.08002 * 120.47203 * 179.97438 * 7 6 5 34 34 H 0.96993 * 119.99864 * 0.02562 * 11 9 8 35 35 H 1.08999 * 109.47454 * 299.99734 * 12 11 9 36 36 H 1.08996 * 109.47254 * 59.99946 * 12 11 9 37 37 H 1.09004 * 110.71891 * 271.94119 * 15 13 12 38 38 H 1.09001 * 110.72028 * 35.02735 * 15 13 12 39 39 H 1.08996 * 109.88572 * 97.22366 * 16 15 13 40 40 H 1.09000 * 109.87947 * 218.23529 * 16 15 13 41 41 H 0.97001 * 120.00251 * 179.97438 * 21 20 18 42 42 H 1.09001 * 110.34889 * 265.24945 * 26 17 16 43 43 H 1.09003 * 110.40611 * 142.91693 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2702 1.0824 0.0000 4 6 3.5515 0.7301 -0.0058 5 7 4.6833 1.4424 -0.0077 6 6 5.8563 0.8545 -0.0133 7 6 5.9498 -0.5433 -0.0179 8 6 4.7995 -1.2872 -0.0171 9 6 4.8574 -2.7631 -0.0213 10 8 5.9332 -3.3292 -0.0265 11 7 3.7175 -3.4824 -0.0199 12 6 3.7751 -4.9462 -0.0235 13 6 2.3538 -5.5125 -0.0216 14 1 1.7709 -5.1023 -0.8463 15 6 2.3728 -7.0631 -0.0713 16 6 1.0398 -7.4470 0.6048 17 7 0.6309 -6.3091 1.4412 18 6 -0.5111 -6.2412 2.1936 19 1 -0.7219 -5.3570 2.7768 20 6 -1.3981 -7.3089 2.2066 21 7 -1.1411 -8.3868 1.4962 22 14 -2.9558 -7.2167 3.2336 23 1 -3.7818 -6.0698 2.7780 24 1 -3.7272 -8.4759 3.0771 25 1 -2.5965 -7.0312 4.6624 26 6 1.6543 -5.2526 1.3359 27 7 3.5945 -0.6360 -0.0090 28 7 2.2639 -1.0737 -0.0056 29 1 -0.3633 -0.0053 1.0276 30 1 -0.3632 0.8926 -0.5092 31 1 -0.3634 -0.8873 -0.5185 32 1 6.7558 1.4523 -0.0152 33 1 6.9152 -1.0276 -0.0230 34 1 2.8592 -3.0308 -0.0165 35 1 4.3003 -5.2870 -0.9158 36 1 4.3052 -5.2912 0.8641 37 1 2.3977 -7.4157 -1.1025 38 1 3.2204 -7.4566 0.4898 39 1 0.2815 -7.6408 -0.1538 40 1 1.1798 -8.3334 1.2236 41 1 -1.7607 -9.1330 1.5057 42 1 2.3703 -5.3356 2.1536 43 1 1.1861 -4.2682 1.3391 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028927905.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:07 Heat of formation + Delta-G solvation = 133.598325 kcal Electronic energy + Delta-G solvation = -27940.965240 eV Core-core repulsion = 24024.939134 eV Total energy + Delta-G solvation = -3916.026106 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -43.36038 -40.24808 -39.04455 -37.72001 -35.24475 -34.75155 -32.64013 -32.53812 -31.17633 -29.95028 -29.18978 -28.44199 -26.32898 -25.24466 -24.44308 -23.37823 -21.77846 -21.13768 -20.06308 -19.87074 -18.95961 -18.59610 -17.48022 -17.18216 -16.81325 -16.15744 -15.86567 -15.58397 -14.92287 -14.59372 -14.32261 -14.02790 -13.97891 -13.92865 -13.64186 -13.26441 -13.07422 -12.81070 -12.64834 -12.40139 -12.13735 -11.96820 -11.79760 -11.47436 -11.05521 -10.93119 -10.80303 -10.59591 -10.46164 -10.27935 -10.14272 -9.98767 -9.97626 -9.89378 -9.68144 -9.36057 -9.16732 -8.61851 -6.85782 -5.73094 -3.06723 -0.45732 0.22947 1.30758 1.89342 2.52188 2.55158 2.82214 3.01998 3.38994 3.42652 3.43328 3.44571 3.94502 4.14401 4.26513 4.47362 4.60364 4.76896 4.98459 5.13830 5.15601 5.30758 5.31369 5.34993 5.48989 5.50159 5.58606 5.60608 5.78818 5.81051 5.90645 5.96132 5.99002 6.16625 6.28466 6.46638 6.47917 6.62372 6.85124 6.87525 7.21205 7.50424 7.53265 7.59612 7.76820 7.80203 8.23793 9.20179 9.80338 10.46373 11.38651 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.014198 B = 0.003227 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.657823 B = 8674.994251 C =10279.063115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.288 3.712 3 N -0.516 5.516 4 C 0.442 3.558 5 N -0.441 5.441 6 C 0.207 3.793 7 C -0.157 4.157 8 C 0.156 3.844 9 C 0.552 3.448 10 O -0.517 6.517 11 N -0.698 5.698 12 C 0.128 3.872 13 C -0.118 4.118 14 H 0.081 0.919 15 C -0.134 4.134 16 C 0.178 3.822 17 N -0.605 5.605 18 C -0.230 4.230 19 H 0.077 0.923 20 C -0.008 4.008 21 N -0.922 5.922 22 Si 0.912 3.088 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.285 1.285 26 C 0.143 3.857 27 N -0.317 5.317 28 N -0.337 5.337 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.201 0.799 33 H 0.188 0.812 34 H 0.419 0.581 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.047 0.953 40 H 0.044 0.956 41 H 0.253 0.747 42 H 0.018 0.982 43 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.647 16.579 -5.912 22.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.008 3.992 3 N -0.248 5.248 4 C 0.082 3.918 5 N -0.155 5.155 6 C 0.020 3.980 7 C -0.183 4.183 8 C 0.034 3.966 9 C 0.334 3.666 10 O -0.393 6.393 11 N -0.353 5.353 12 C 0.005 3.995 13 C -0.138 4.138 14 H 0.099 0.901 15 C -0.173 4.173 16 C 0.053 3.947 17 N -0.331 5.331 18 C -0.358 4.358 19 H 0.094 0.906 20 C -0.204 4.204 21 N -0.570 5.570 22 Si 0.742 3.258 23 H -0.211 1.211 24 H -0.216 1.216 25 H -0.212 1.212 26 C 0.016 3.984 27 N -0.099 5.099 28 N -0.171 5.171 29 H 0.115 0.885 30 H 0.113 0.887 31 H 0.114 0.886 32 H 0.218 0.782 33 H 0.205 0.795 34 H 0.261 0.739 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.035 0.965 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 13.284 16.507 -5.859 21.983 hybrid contribution -0.823 -0.575 0.575 1.158 sum 12.460 15.932 -5.284 20.904 Atomic orbital electron populations 1.20371 0.82017 1.05198 1.05111 1.24641 0.98759 0.84264 0.91519 1.70746 0.96441 1.28455 1.29184 1.22780 0.93779 0.78169 0.97046 1.67816 0.95709 1.36382 1.15574 1.23701 0.95262 0.91915 0.87130 1.22322 0.98863 0.94848 1.02225 1.21057 0.82563 0.94651 0.98284 1.17539 0.85553 0.84309 0.79157 1.90859 1.28292 1.70015 1.50162 1.46447 1.09350 1.08711 1.70752 1.21604 0.98331 0.76982 1.02567 1.22624 0.93327 0.97502 1.00376 0.90088 1.22867 1.00920 0.92834 1.00650 1.21143 0.89848 0.90361 0.93349 1.44461 1.21179 1.13643 1.53830 1.19005 0.95683 1.00934 1.20167 0.90554 1.24800 0.99030 0.96359 1.00203 1.69949 1.37139 1.05983 1.43908 0.86199 0.82904 0.76802 0.79849 1.21121 1.21577 1.21196 1.21565 0.91264 0.92922 0.92629 1.48989 1.06139 1.09279 1.45455 1.78149 0.83037 1.21275 1.34664 0.88458 0.88660 0.88618 0.78232 0.79455 0.73932 0.90930 0.90617 0.91878 0.92116 0.93496 0.93812 0.93688 0.96478 0.94484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.62 10.51 36.01 0.38 -0.24 16 2 C 0.29 3.73 8.09 -157.00 -1.27 2.46 16 3 N -0.52 -7.31 11.24 -11.80 -0.13 -7.44 16 4 C 0.44 5.90 9.00 -323.14 -2.91 3.00 16 5 N -0.44 -4.70 10.45 -13.84 -0.14 -4.84 16 6 C 0.21 1.26 11.26 -17.12 -0.19 1.07 16 7 C -0.16 -1.14 9.63 -39.34 -0.38 -1.51 16 8 C 0.16 1.78 6.81 -82.16 -0.56 1.22 16 9 C 0.55 7.40 7.80 -12.39 -0.10 7.30 16 10 O -0.52 -7.61 16.37 5.32 0.09 -7.53 16 11 N -0.70 -9.86 5.44 -61.30 -0.33 -10.19 16 12 C 0.13 1.85 5.12 -4.04 -0.02 1.83 16 13 C -0.12 -1.99 3.07 -88.47 -0.27 -2.26 16 14 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 15 C -0.13 -2.40 6.42 -24.90 -0.16 -2.56 16 16 C 0.18 4.25 5.37 -3.06 -0.02 4.24 16 17 N -0.60 -15.35 3.40 -170.04 -0.58 -15.93 16 18 C -0.23 -6.39 10.28 -15.06 -0.15 -6.54 16 19 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 20 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 21 N -0.92 -26.95 10.31 55.49 0.57 -26.38 16 22 Si 0.91 21.99 29.55 -169.99 -5.02 16.97 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 26 C 0.14 2.92 6.56 -2.50 -0.02 2.90 16 27 N -0.32 -4.16 3.93 -10.51 -0.04 -4.20 16 28 N -0.34 -4.71 10.11 32.39 0.33 -4.39 16 29 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.20 0.17 8.06 -52.48 -0.42 -0.25 16 33 H 0.19 0.88 7.66 -52.49 -0.40 0.48 16 34 H 0.42 6.11 5.52 -40.82 -0.23 5.88 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.08 1.12 8.04 -51.93 -0.42 0.71 16 37 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 38 H 0.06 1.02 8.04 -51.93 -0.42 0.60 16 39 H 0.05 1.24 7.38 -51.93 -0.38 0.85 16 40 H 0.04 1.16 7.50 -51.93 -0.39 0.77 16 41 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 42 H 0.02 0.36 7.96 -51.93 -0.41 -0.05 16 43 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 360.81 15.07 5.44 5.44 Total: -1.00 -35.19 360.81 -11.17 -46.36 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -5.58 Total: 1.56 kcal Atomic # 6 Polarization: 16.34 SS G_CDS: -5.76 Total: 10.58 kcal Atomic # 7 Polarization: -73.04 SS G_CDS: -0.33 Total: -73.37 kcal Atomic # 8 Polarization: -7.61 SS G_CDS: 0.09 Total: -7.53 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.19 -11.17 -46.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028927905.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.956 kcal (2) G-P(sol) polarization free energy of solvation -35.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds