Wall clock time and date at job start Tue Mar 31 2020 05:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.32444 * 125.18515 * 2 1 4 4 C 1.32881 * 109.81010 * 179.97438 * 3 2 1 5 5 N 1.33733 * 132.43816 * 179.97438 * 4 3 2 6 6 C 1.31218 * 121.19271 * 180.02562 * 5 4 3 7 7 C 1.40096 * 120.45125 * 359.73473 * 6 5 4 8 8 C 1.36996 * 119.05277 * 0.53587 * 7 6 5 9 9 C 1.47717 * 120.63237 * 179.73727 * 8 7 6 10 10 O 1.21560 * 120.00328 * 359.72877 * 9 8 7 11 11 N 1.34780 * 120.00044 * 179.72723 * 9 8 7 12 12 C 1.46498 * 120.00246 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.47108 * 180.02562 * 12 11 9 14 14 H 1.09002 * 110.77651 * 303.20678 * 13 12 11 15 15 C 1.55160 * 110.71864 * 179.97438 * 13 12 11 16 16 C 1.54910 * 101.58122 * 206.13184 * 15 13 12 17 17 N 1.47425 * 104.83231 * 37.00939 * 16 15 13 18 18 C 1.36933 * 125.64542 * 156.13438 * 17 16 15 19 19 H 1.08005 * 119.99541 * 179.69129 * 18 17 16 20 20 C 1.38813 * 120.00564 * 359.69503 * 18 17 16 21 21 N 1.31616 * 119.99514 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 120.00305 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47209 * 89.99775 * 22 20 18 24 24 H 1.48501 * 109.47422 * 209.99954 * 22 20 18 25 25 H 1.48504 * 109.47192 * 329.99911 * 22 20 18 26 26 C 1.47026 * 108.70074 * 335.87083 * 17 16 15 27 27 N 1.36683 * 107.18211 * 0.02562 * 4 3 2 28 28 N 1.31363 * 125.18449 * 179.97438 * 2 1 3 29 29 H 1.09002 * 109.47181 * 90.02200 * 1 2 3 30 30 H 1.08996 * 109.47439 * 210.02323 * 1 2 3 31 31 H 1.09002 * 109.46862 * 330.03201 * 1 2 3 32 32 H 1.07998 * 119.77233 * 180.02562 * 6 5 4 33 33 H 1.07999 * 120.47117 * 180.30913 * 7 6 5 34 34 H 0.96999 * 119.99460 * 359.97438 * 11 9 8 35 35 H 1.09003 * 109.47365 * 59.99474 * 12 11 9 36 36 H 1.09000 * 109.46701 * 299.99851 * 12 11 9 37 37 H 1.08991 * 111.00600 * 324.20802 * 15 13 12 38 38 H 1.09004 * 111.00084 * 88.02248 * 15 13 12 39 39 H 1.09001 * 110.36852 * 278.17238 * 16 15 13 40 40 H 1.08998 * 110.36449 * 155.84885 * 16 15 13 41 41 H 0.97002 * 119.99999 * 179.97438 * 21 20 18 42 42 H 1.09004 * 109.87531 * 120.47707 * 26 17 16 43 43 H 1.08996 * 109.88343 * 241.48426 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2701 1.0825 0.0000 4 6 3.5514 0.7301 0.0006 5 7 4.6832 1.4425 0.0003 6 6 5.8563 0.8546 0.0005 7 6 5.9499 -0.5433 0.0066 8 6 4.7994 -1.2871 0.0011 9 6 4.8575 -2.7631 0.0013 10 8 5.9333 -3.3291 0.0014 11 7 3.7177 -3.4824 0.0014 12 6 3.7752 -4.9462 0.0022 13 6 2.3539 -5.5125 0.0015 14 1 1.7875 -5.1366 0.8536 15 6 2.3810 -7.0638 0.0017 16 6 1.0246 -7.3987 -0.6674 17 7 0.8478 -6.3627 -1.7013 18 6 0.0746 -6.4807 -2.8252 19 1 0.0065 -5.6587 -3.5225 20 6 -0.6217 -7.6566 -3.0685 21 7 -0.5383 -8.6585 -2.2190 22 14 -1.6769 -7.8173 -4.6014 23 1 -0.8570 -8.3652 -5.7117 24 1 -2.8132 -8.7330 -4.3265 25 1 -2.1996 -6.4812 -4.9848 26 6 1.6341 -5.1796 -1.3223 27 7 3.5945 -0.6360 0.0003 28 7 2.2639 -1.0736 0.0005 29 1 -0.3634 -0.0004 -1.0277 30 1 -0.3634 -0.8897 0.5142 31 1 -0.3633 0.8903 0.5134 32 1 6.7557 1.4523 0.0008 33 1 6.9152 -1.0275 0.0117 34 1 2.8593 -3.0307 0.0017 35 1 4.3028 -5.2887 0.8925 36 1 4.3031 -5.2895 -0.8875 37 1 3.2134 -7.4401 -0.5929 38 1 2.4224 -7.4537 1.0187 39 1 0.2178 -7.3466 0.0637 40 1 1.0608 -8.3879 -1.1239 41 1 -1.0251 -9.4801 -2.3887 42 1 2.3676 -4.9582 -2.0977 43 1 0.9730 -4.3243 -1.1826 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028927906.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:11 Heat of formation + Delta-G solvation = 134.709928 kcal Electronic energy + Delta-G solvation = -27932.978399 eV Core-core repulsion = 24017.000496 eV Total energy + Delta-G solvation = -3915.977903 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -43.36691 -40.24855 -39.05067 -37.73155 -35.24440 -34.75055 -32.65250 -32.55196 -31.18265 -29.96072 -29.20654 -28.41344 -26.32458 -25.26836 -24.45245 -23.37254 -21.78894 -21.15124 -20.16289 -19.70624 -18.96844 -18.60379 -17.47757 -17.18802 -16.85383 -16.11815 -15.88659 -15.61746 -14.97231 -14.62462 -14.35972 -14.02948 -13.99179 -13.94187 -13.66870 -13.12665 -13.05769 -12.80626 -12.67991 -12.54583 -12.03556 -11.84628 -11.76289 -11.56020 -11.04518 -10.98828 -10.82032 -10.60098 -10.49551 -10.28500 -10.12647 -10.05121 -9.99627 -9.83413 -9.56835 -9.36182 -9.16677 -8.67828 -6.86346 -5.68101 -3.09811 -0.45900 0.22456 1.30099 1.88802 2.51896 2.55615 2.81696 3.01733 3.38124 3.42045 3.43183 3.45050 3.94504 4.13419 4.26171 4.46173 4.60050 4.76576 4.98842 5.14269 5.16431 5.28191 5.29252 5.33210 5.46553 5.48187 5.58953 5.60382 5.77677 5.79879 5.92641 5.96177 6.00666 6.17443 6.28885 6.51925 6.52546 6.66128 6.84870 6.87024 7.21451 7.47597 7.49478 7.59910 7.77308 7.82399 8.33385 9.19506 9.80230 10.44974 11.35922 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.014478 B = 0.003105 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.561226 B = 9014.864990 C =10215.155990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.287 3.713 3 N -0.516 5.516 4 C 0.443 3.557 5 N -0.441 5.441 6 C 0.207 3.793 7 C -0.156 4.156 8 C 0.156 3.844 9 C 0.552 3.448 10 O -0.517 6.517 11 N -0.698 5.698 12 C 0.128 3.872 13 C -0.115 4.115 14 H 0.077 0.923 15 C -0.134 4.134 16 C 0.152 3.848 17 N -0.603 5.603 18 C -0.223 4.223 19 H 0.076 0.924 20 C -0.011 4.011 21 N -0.922 5.922 22 Si 0.915 3.085 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.282 1.282 26 C 0.142 3.858 27 N -0.317 5.317 28 N -0.338 5.338 29 H 0.097 0.903 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.201 0.799 33 H 0.188 0.812 34 H 0.419 0.581 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.012 0.988 40 H 0.108 0.892 41 H 0.252 0.748 42 H 0.021 0.979 43 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.728 17.062 7.950 22.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.007 3.993 3 N -0.248 5.248 4 C 0.083 3.917 5 N -0.155 5.155 6 C 0.020 3.980 7 C -0.182 4.182 8 C 0.035 3.965 9 C 0.334 3.666 10 O -0.393 6.393 11 N -0.353 5.353 12 C 0.005 3.995 13 C -0.135 4.135 14 H 0.096 0.904 15 C -0.174 4.174 16 C 0.027 3.973 17 N -0.330 5.330 18 C -0.351 4.351 19 H 0.094 0.906 20 C -0.206 4.206 21 N -0.571 5.571 22 Si 0.745 3.255 23 H -0.216 1.216 24 H -0.216 1.216 25 H -0.207 1.207 26 C 0.016 3.984 27 N -0.098 5.098 28 N -0.172 5.172 29 H 0.115 0.885 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.218 0.782 33 H 0.206 0.794 34 H 0.260 0.740 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.030 0.970 40 H 0.126 0.874 41 H 0.063 0.937 42 H 0.039 0.961 43 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 11.414 16.996 7.838 21.922 hybrid contribution -0.581 -0.562 -0.775 1.120 sum 10.833 16.434 7.062 20.912 Atomic orbital electron populations 1.20361 0.82064 1.05133 1.05087 1.24629 0.98746 0.84296 0.91595 1.70744 0.96443 1.28440 1.29213 1.22778 0.93782 0.78161 0.97021 1.67823 0.95706 1.36366 1.15607 1.23706 0.95262 0.91916 0.87083 1.22327 0.98872 0.94846 1.02194 1.21066 0.82555 0.94666 0.98246 1.17545 0.85569 0.84302 0.79174 1.90862 1.28284 1.70001 1.50115 1.46452 1.09324 1.08739 1.70777 1.21658 0.98257 0.76899 1.02639 1.22451 0.93435 0.98047 0.99530 0.90426 1.23020 1.01829 0.92180 1.00322 1.21944 0.89383 0.96512 0.89443 1.44497 1.54010 1.11055 1.23392 1.19069 1.19632 0.99143 0.97273 0.90585 1.24783 1.00655 0.96347 0.98863 1.69787 1.46122 1.05019 1.36158 0.86070 0.79705 0.77424 0.82280 1.21579 1.21606 1.20745 1.21296 0.93386 0.91242 0.92450 1.48978 1.06127 1.09280 1.45446 1.78141 0.83063 1.21288 1.34676 0.88464 0.88711 0.88657 0.78218 0.79437 0.73977 0.90907 0.90513 0.91744 0.91990 0.96952 0.87419 0.93706 0.96090 0.96193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.59 10.51 36.00 0.38 -0.21 16 2 C 0.29 3.67 8.09 -157.00 -1.27 2.40 16 3 N -0.52 -7.27 11.24 -11.80 -0.13 -7.40 16 4 C 0.44 5.90 8.99 -323.15 -2.91 3.00 16 5 N -0.44 -4.71 10.45 -13.84 -0.14 -4.86 16 6 C 0.21 1.28 11.26 -17.12 -0.19 1.08 16 7 C -0.16 -1.15 9.63 -39.34 -0.38 -1.53 16 8 C 0.16 1.80 6.81 -82.15 -0.56 1.24 16 9 C 0.55 7.52 7.80 -12.39 -0.10 7.42 16 10 O -0.52 -7.76 16.37 5.31 0.09 -7.67 16 11 N -0.70 -10.02 5.39 -61.29 -0.33 -10.35 16 12 C 0.13 1.90 4.99 -4.04 -0.02 1.88 16 13 C -0.12 -1.95 3.02 -88.79 -0.27 -2.22 16 14 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 15 C -0.13 -2.45 6.53 -24.58 -0.16 -2.61 16 16 C 0.15 3.63 5.89 -2.53 -0.01 3.62 16 17 N -0.60 -15.41 3.39 -170.07 -0.58 -15.99 16 18 C -0.22 -6.22 10.27 -15.06 -0.15 -6.38 16 19 H 0.08 2.06 7.83 -52.48 -0.41 1.65 16 20 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 21 N -0.92 -26.70 10.09 55.49 0.56 -26.14 16 22 Si 0.91 22.03 29.55 -169.99 -5.02 17.01 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 26 C 0.14 2.96 6.52 -3.07 -0.02 2.94 16 27 N -0.32 -4.16 3.93 -10.51 -0.04 -4.20 16 28 N -0.34 -4.69 10.11 32.39 0.33 -4.37 16 29 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.20 0.18 8.06 -52.49 -0.42 -0.24 16 33 H 0.19 0.91 7.66 -52.49 -0.40 0.51 16 34 H 0.42 6.13 5.42 -40.82 -0.22 5.91 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.08 1.20 8.06 -51.93 -0.42 0.79 16 37 H 0.06 1.16 8.05 -51.93 -0.42 0.74 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 40 H 0.11 2.90 5.87 -51.93 -0.30 2.60 16 41 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 42 H 0.02 0.45 7.77 -51.93 -0.40 0.05 16 43 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 359.81 15.07 5.42 5.42 Total: -1.00 -35.04 359.81 -11.13 -46.18 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -5.52 Total: 2.14 kcal Atomic # 6 Polarization: 15.99 SS G_CDS: -5.76 Total: 10.23 kcal Atomic # 7 Polarization: -72.97 SS G_CDS: -0.34 Total: -73.31 kcal Atomic # 8 Polarization: -7.76 SS G_CDS: 0.09 Total: -7.67 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.04 -11.13 -46.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028927906.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.887 kcal (2) G-P(sol) polarization free energy of solvation -35.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds