Wall clock time and date at job start Tue Mar 31 2020 04:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35678 * 120.48455 * 2 1 4 4 C 1.40169 * 119.27030 * 180.02562 * 3 2 1 5 5 N 1.31260 * 120.35920 * 0.02562 * 4 3 2 6 6 C 1.33988 * 120.87846 * 359.97438 * 5 4 3 7 7 N 1.32499 * 132.34279 * 180.33860 * 6 5 4 8 8 C 1.33473 * 109.75229 * 180.12703 * 7 6 5 9 9 C 1.48131 * 125.32007 * 179.82061 * 8 7 6 10 10 O 1.21523 * 119.99337 * 179.69538 * 9 8 7 11 11 N 1.34775 * 120.00217 * 359.69462 * 9 8 7 12 12 C 1.46497 * 119.99944 * 179.97438 * 11 9 8 13 13 C 1.52996 * 109.47114 * 180.02562 * 12 11 9 14 14 H 1.08997 * 110.92180 * 57.44684 * 13 12 11 15 15 C 1.55155 * 111.00532 * 181.35298 * 13 12 11 16 16 C 1.54327 * 102.94571 * 153.57522 * 15 13 12 17 17 N 1.47024 * 107.26774 * 337.80617 * 16 15 13 18 18 C 1.36941 * 125.64618 * 179.20447 * 17 16 15 19 19 H 1.08005 * 119.99780 * 179.68989 * 18 17 16 20 20 C 1.38813 * 119.99913 * 359.69358 * 18 17 16 21 21 N 1.31616 * 119.99926 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99719 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47341 * 89.99896 * 22 20 18 24 24 H 1.48503 * 109.46756 * 209.99724 * 22 20 18 25 25 H 1.48496 * 109.46957 * 329.99498 * 22 20 18 26 26 C 1.47426 * 108.70449 * 358.94057 * 17 16 15 27 27 N 1.31987 * 109.35127 * 359.55441 * 8 7 6 28 28 N 1.36164 * 120.48435 * 180.02562 * 2 1 3 29 29 H 1.09002 * 109.47281 * 269.97110 * 1 2 3 30 30 H 1.09006 * 109.47285 * 29.97080 * 1 2 3 31 31 H 1.09003 * 109.47498 * 149.97700 * 1 2 3 32 32 H 1.08005 * 120.36269 * 0.04860 * 3 2 1 33 33 H 1.08004 * 119.82310 * 179.97438 * 4 3 2 34 34 H 0.97000 * 120.00160 * 0.02562 * 11 9 8 35 35 H 1.09002 * 109.46937 * 60.00106 * 12 11 9 36 36 H 1.09002 * 109.47231 * 300.00009 * 12 11 9 37 37 H 1.08999 * 110.71965 * 271.93488 * 15 13 12 38 38 H 1.09000 * 110.72417 * 35.03508 * 15 13 12 39 39 H 1.08995 * 109.88184 * 218.39040 * 16 15 13 40 40 H 1.09002 * 109.88385 * 97.22047 * 16 15 13 41 41 H 0.97001 * 119.99407 * 180.02562 * 21 20 18 42 42 H 1.09002 * 110.36518 * 142.96440 * 26 17 16 43 43 H 1.08995 * 110.36673 * 265.17549 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.1692 0.0000 4 6 3.5967 1.1395 -0.0005 5 7 4.2359 -0.0069 -0.0016 6 6 3.5665 -1.1675 -0.0016 7 7 3.9689 -2.4299 0.0033 8 6 2.9090 -3.2412 -0.0020 9 6 2.9636 -4.7215 -0.0028 10 8 1.9343 -5.3674 -0.0023 11 7 4.1549 -5.3520 -0.0040 12 6 4.2088 -6.8159 -0.0041 13 6 5.6691 -7.2724 -0.0049 14 1 6.2045 -6.8658 0.8530 15 6 5.7678 -8.8205 -0.0393 16 6 7.1383 -9.0648 -0.7054 17 7 7.4739 -7.8546 -1.4699 18 6 8.6190 -7.6610 -2.1955 19 1 8.7702 -6.7340 -2.7288 20 6 9.5855 -8.6561 -2.2458 21 7 9.4014 -9.7856 -1.5956 22 14 11.1478 -8.3917 -3.2351 23 1 12.1838 -7.7745 -2.3686 24 1 11.6400 -9.6981 -3.7414 25 1 10.8614 -7.4925 -4.3816 26 6 6.3707 -6.8866 -1.3311 27 7 1.8048 -2.5182 -0.0008 28 7 2.1978 -1.1734 -0.0005 29 1 -0.3634 -0.0005 1.0277 30 1 -0.3634 0.8903 -0.5134 31 1 -0.3634 -0.8898 -0.5142 32 1 1.6692 2.1125 0.0008 33 1 4.1535 2.0649 -0.0010 34 1 4.9765 -4.8364 -0.0040 35 1 3.7079 -7.1979 -0.8937 36 1 3.7096 -7.1980 0.8863 37 1 5.7514 -9.2305 0.9705 38 1 4.9632 -9.2451 -0.6396 39 1 7.0770 -9.9218 -1.3761 40 1 7.8954 -9.2425 0.0584 41 1 10.0770 -10.4808 -1.6304 42 1 6.7624 -5.8711 -1.2715 43 1 5.6790 -6.9771 -2.1685 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028967986.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:48 Heat of formation + Delta-G solvation = 130.719622 kcal Electronic energy + Delta-G solvation = -26966.682382 eV Core-core repulsion = 23050.531447 eV Total energy + Delta-G solvation = -3916.150936 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.37409 -40.03911 -38.92330 -37.58588 -35.76644 -34.76730 -32.66346 -32.15443 -31.39630 -29.84202 -29.10132 -28.38812 -26.23617 -24.99624 -24.64186 -23.34804 -22.28508 -20.71905 -19.91861 -19.80665 -19.03056 -18.50593 -17.43457 -17.22882 -16.71024 -16.12356 -15.96448 -15.44858 -14.81042 -14.73408 -14.52158 -14.16345 -13.94906 -13.93961 -13.50750 -13.31792 -13.12355 -13.04793 -12.95125 -12.30378 -12.04300 -11.92825 -11.71503 -11.37727 -10.86281 -10.75771 -10.73423 -10.63012 -10.50685 -10.22701 -10.21740 -10.06172 -9.89365 -9.81176 -9.60898 -9.24363 -9.07219 -8.55391 -6.78168 -5.66592 -2.99716 -0.17023 0.13958 1.24016 1.45736 2.57221 2.74201 2.90452 3.17697 3.44008 3.48856 3.50861 3.51456 3.69010 4.10174 4.28143 4.52915 4.54876 4.65230 4.68725 4.73531 5.09005 5.12575 5.25756 5.35114 5.44877 5.52159 5.56941 5.57596 5.69116 5.72242 5.91085 6.02598 6.07370 6.31386 6.38230 6.56000 6.57075 6.71855 6.89307 6.95663 7.19618 7.50498 7.61146 7.67613 7.87440 7.98350 8.30952 9.27251 9.87494 10.53511 11.45317 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.017440 B = 0.002354 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.145506 B =11890.279166 C =13253.623898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.204 3.796 3 C -0.227 4.227 4 C 0.212 3.788 5 N -0.452 5.452 6 C 0.446 3.554 7 N -0.496 5.496 8 C 0.244 3.756 9 C 0.608 3.392 10 O -0.512 6.512 11 N -0.693 5.693 12 C 0.132 3.868 13 C -0.119 4.119 14 H 0.083 0.917 15 C -0.134 4.134 16 C 0.177 3.823 17 N -0.606 5.606 18 C -0.226 4.226 19 H 0.078 0.922 20 C -0.010 4.010 21 N -0.923 5.923 22 Si 0.912 3.088 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.282 1.282 26 C 0.140 3.860 27 N -0.269 5.269 28 N -0.328 5.328 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.176 0.824 33 H 0.194 0.806 34 H 0.416 0.584 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.043 0.957 40 H 0.047 0.953 41 H 0.252 0.748 42 H 0.038 0.962 43 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.686 24.207 6.029 31.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.086 3.914 3 C -0.252 4.252 4 C 0.026 3.974 5 N -0.167 5.167 6 C 0.086 3.914 7 N -0.230 5.230 8 C -0.040 4.040 9 C 0.387 3.613 10 O -0.384 6.384 11 N -0.345 5.345 12 C 0.009 3.991 13 C -0.138 4.138 14 H 0.101 0.899 15 C -0.173 4.173 16 C 0.053 3.947 17 N -0.332 5.332 18 C -0.355 4.355 19 H 0.095 0.905 20 C -0.206 4.206 21 N -0.571 5.571 22 Si 0.743 3.257 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.207 1.207 26 C 0.014 3.986 27 N -0.103 5.103 28 N -0.110 5.110 29 H 0.116 0.884 30 H 0.118 0.882 31 H 0.110 0.890 32 H 0.193 0.807 33 H 0.211 0.789 34 H 0.252 0.748 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.061 0.939 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.057 0.943 43 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -18.631 22.672 5.971 29.947 hybrid contribution 0.523 0.792 -0.524 1.084 sum -18.108 23.465 5.447 30.135 Atomic orbital electron populations 1.21106 0.86124 1.05790 1.05129 1.20968 0.96837 0.81857 0.91723 1.21860 0.95773 0.97937 1.09675 1.23672 0.91759 0.95836 0.86108 1.68111 1.36111 0.94997 1.17432 1.22734 0.78288 0.93682 0.96694 1.70881 1.28133 0.96407 1.27585 1.24287 0.85893 0.96908 0.96885 1.16295 0.84805 0.81825 0.78379 1.90850 1.33559 1.64785 1.49223 1.45848 1.07822 1.08719 1.72134 1.21586 0.97864 0.76986 1.02627 1.22633 0.92831 0.97944 1.00440 0.89880 1.22864 1.00782 0.92994 1.00631 1.21152 0.89750 0.89561 0.94283 1.44478 1.17403 1.13520 1.57830 1.19072 0.93360 1.00587 1.22461 0.90451 1.24803 0.98802 0.96373 1.00611 1.69966 1.34734 1.06276 1.46089 0.86112 0.83289 0.76804 0.79539 1.21615 1.21724 1.20725 1.21590 0.90365 0.93751 0.92921 1.78879 1.19327 0.82927 1.29157 1.49060 1.09221 1.06346 1.46336 0.88377 0.88217 0.88960 0.80660 0.78928 0.74756 0.90642 0.90934 0.91887 0.92122 0.93886 0.93491 0.93807 0.94346 0.96251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.45 10.13 36.01 0.36 -0.08 16 2 C 0.20 1.35 6.86 -81.59 -0.56 0.79 16 3 C -0.23 -0.75 9.72 -39.77 -0.39 -1.14 16 4 C 0.21 1.04 11.27 -17.07 -0.19 0.85 16 5 N -0.45 -4.79 10.48 -13.79 -0.14 -4.94 16 6 C 0.45 5.94 8.99 -323.04 -2.90 3.03 16 7 N -0.50 -7.64 10.89 -12.23 -0.13 -7.77 16 8 C 0.24 3.79 7.92 -156.78 -1.24 2.55 16 9 C 0.61 9.76 7.84 -12.20 -0.10 9.66 16 10 O -0.51 -9.35 17.07 5.35 0.09 -9.26 16 11 N -0.69 -10.25 5.40 -61.16 -0.33 -10.58 16 12 C 0.13 1.97 5.12 -4.05 -0.02 1.94 16 13 C -0.12 -2.02 3.10 -88.47 -0.27 -2.30 16 14 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 15 C -0.13 -2.46 6.42 -24.90 -0.16 -2.62 16 16 C 0.18 4.34 5.37 -3.06 -0.02 4.32 16 17 N -0.61 -15.74 3.39 -170.07 -0.58 -16.31 16 18 C -0.23 -6.45 10.28 -15.06 -0.15 -6.60 16 19 H 0.08 2.13 7.83 -52.48 -0.41 1.72 16 20 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 21 N -0.92 -27.54 10.31 55.49 0.57 -26.97 16 22 Si 0.91 22.54 29.55 -169.99 -5.02 17.52 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 25 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 26 C 0.14 2.91 6.41 -2.53 -0.02 2.90 16 27 N -0.27 -3.92 12.67 32.02 0.41 -3.51 16 28 N -0.33 -3.82 3.91 -10.07 -0.04 -3.85 16 29 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.10 0.04 8.09 -51.93 -0.42 -0.38 16 31 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.18 -0.21 8.06 -52.48 -0.42 -0.64 16 33 H 0.19 0.06 8.06 -52.48 -0.42 -0.37 16 34 H 0.42 5.95 8.01 -40.82 -0.33 5.63 16 35 H 0.08 1.16 8.10 -51.93 -0.42 0.74 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.06 1.04 8.04 -51.93 -0.42 0.63 16 39 H 0.04 1.16 7.51 -51.93 -0.39 0.77 16 40 H 0.05 1.27 7.38 -51.93 -0.38 0.88 16 41 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 42 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.02 0.41 8.01 -51.93 -0.42 0.00 16 LS Contribution 366.15 15.07 5.52 5.52 Total: -1.00 -37.64 366.15 -11.12 -48.76 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -5.70 Total: -1.53 kcal Atomic # 6 Polarization: 18.68 SS G_CDS: -5.75 Total: 12.93 kcal Atomic # 7 Polarization: -73.68 SS G_CDS: -0.25 Total: -73.93 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: 0.09 Total: -9.26 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -37.64 -11.12 -48.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028967986.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.479 kcal (2) G-P(sol) polarization free energy of solvation -37.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds