Wall clock time and date at job start Tue Mar 31 2020 04:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35678 * 120.48813 * 2 1 4 4 C 1.40175 * 119.27451 * 180.02562 * 3 2 1 5 5 N 1.31258 * 120.35250 * 0.02562 * 4 3 2 6 6 C 1.33978 * 120.88570 * 359.97438 * 5 4 3 7 7 N 1.32501 * 132.34783 * 180.02562 * 6 5 4 8 8 C 1.33468 * 109.75465 * 180.02562 * 7 6 5 9 9 C 1.48129 * 125.32208 * 179.97438 * 8 7 6 10 10 O 1.21519 * 120.00160 * 180.02562 * 9 8 7 11 11 N 1.34782 * 119.99959 * 0.29479 * 9 8 7 12 12 C 1.46501 * 119.99997 * 179.73309 * 11 9 8 13 13 C 1.53000 * 109.47222 * 179.97438 * 12 11 9 14 14 H 1.09002 * 110.63457 * 305.69545 * 13 12 11 15 15 C 1.55150 * 110.72279 * 182.55574 * 13 12 11 16 16 C 1.54909 * 101.58395 * 206.13412 * 15 13 12 17 17 N 1.47427 * 104.83222 * 37.00624 * 16 15 13 18 18 C 1.36934 * 125.64945 * 155.90751 * 17 16 15 19 19 H 1.08006 * 120.00056 * 342.05443 * 18 17 16 20 20 C 1.38811 * 120.00137 * 162.04892 * 18 17 16 21 21 N 1.31620 * 119.99795 * 156.24251 * 20 18 17 22 22 Si 1.86799 * 119.99990 * 336.25081 * 20 18 17 23 23 H 1.48500 * 109.47407 * 84.66517 * 22 20 18 24 24 H 1.48501 * 109.46895 * 204.66489 * 22 20 18 25 25 H 1.48503 * 109.47076 * 324.66050 * 22 20 18 26 26 C 1.47326 * 108.73510 * 335.71747 * 17 16 15 27 27 N 1.31990 * 109.35557 * 0.22265 * 8 7 6 28 28 N 1.36171 * 120.48635 * 180.02562 * 2 1 3 29 29 H 1.09000 * 109.46480 * 90.00056 * 1 2 3 30 30 H 1.08992 * 109.47243 * 209.99777 * 1 2 3 31 31 H 1.08997 * 109.47254 * 330.00249 * 1 2 3 32 32 H 1.08006 * 120.36454 * 0.04140 * 3 2 1 33 33 H 1.07994 * 119.82061 * 179.97438 * 4 3 2 34 34 H 0.96994 * 119.99777 * 359.72164 * 11 9 8 35 35 H 1.09001 * 109.46658 * 299.99438 * 12 11 9 36 36 H 1.08998 * 109.47701 * 59.99538 * 12 11 9 37 37 H 1.09006 * 111.00172 * 324.20277 * 15 13 12 38 38 H 1.08993 * 111.00800 * 88.01812 * 15 13 12 39 39 H 1.08996 * 110.36829 * 155.84463 * 16 15 13 40 40 H 1.08999 * 110.36762 * 278.06058 * 16 15 13 41 41 H 0.97002 * 119.99619 * 180.02562 * 21 20 18 42 42 H 1.08997 * 110.05931 * 241.87378 * 26 17 16 43 43 H 1.08995 * 109.84524 * 120.60933 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1954 1.1692 0.0000 4 6 3.5968 1.1395 -0.0005 5 7 4.2359 -0.0070 -0.0016 6 6 3.5666 -1.1675 -0.0016 7 7 3.9689 -2.4300 -0.0020 8 6 2.9090 -3.2412 -0.0024 9 6 2.9636 -4.7215 -0.0035 10 8 1.9343 -5.3675 -0.0042 11 7 4.1548 -5.3520 0.0018 12 6 4.2087 -6.8160 0.0067 13 6 5.6690 -7.2726 0.0115 14 1 6.2151 -6.8218 -0.8172 15 6 5.7605 -8.8202 -0.0480 16 6 7.1283 -9.0774 0.6322 17 7 7.2098 -8.0722 1.7076 18 6 7.9693 -8.1771 2.8422 19 1 8.3421 -9.1412 3.1553 20 6 8.2602 -7.0443 3.5899 21 7 8.5597 -7.1575 4.8666 22 14 8.2265 -5.3594 2.7842 23 1 6.8361 -4.8378 2.7853 24 1 9.1040 -4.4310 3.5415 25 1 8.7128 -5.4697 1.3854 26 6 6.3426 -6.9337 1.3580 27 7 1.8048 -2.5183 -0.0070 28 7 2.1978 -1.1735 -0.0005 29 1 -0.3632 0.0000 -1.0277 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6693 2.1125 0.0007 33 1 4.1536 2.0649 -0.0010 34 1 4.9764 -4.8364 0.0023 35 1 3.7062 -7.1951 0.8966 36 1 3.7110 -7.2010 -0.8834 37 1 4.9504 -9.2815 0.5169 38 1 5.7643 -9.1721 -1.0796 39 1 7.1609 -10.0835 1.0501 40 1 7.9395 -8.9376 -0.0822 41 1 8.7626 -6.3659 5.3891 42 1 6.9388 -6.0270 1.2564 43 1 5.5835 -6.7966 2.1280 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028967987.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:50 Heat of formation + Delta-G solvation = 138.760728 kcal Electronic energy + Delta-G solvation = -27489.093440 eV Core-core repulsion = 23573.291193 eV Total energy + Delta-G solvation = -3915.802247 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.36000 -40.06433 -38.96223 -37.91471 -35.75115 -34.84373 -32.67342 -32.21650 -31.38446 -30.45318 -29.08440 -28.75765 -26.54303 -24.97258 -24.61759 -23.44997 -22.30807 -20.79594 -20.27132 -20.03415 -19.03192 -18.51301 -17.43587 -17.21788 -16.84701 -16.25509 -16.11305 -15.76458 -15.18409 -14.71967 -14.55622 -14.16191 -13.92817 -13.87721 -13.47711 -13.41526 -13.11733 -13.09087 -13.02813 -12.76289 -12.43276 -12.02948 -11.90752 -11.53905 -11.27611 -10.94060 -10.76839 -10.71351 -10.51680 -10.50612 -10.32614 -10.20254 -10.17629 -9.82608 -9.29438 -9.22892 -9.10953 -8.57117 -7.02119 -5.90479 -3.18818 -0.15232 0.15437 1.25307 1.46081 2.56931 2.75120 2.90594 3.17863 3.42536 3.52313 3.54260 3.56727 3.69971 4.10157 4.28475 4.54196 4.60214 4.67148 4.70288 4.75173 4.82830 5.04249 5.09221 5.13703 5.26983 5.36619 5.47353 5.53594 5.58308 5.64676 5.71865 5.79813 5.85957 6.04192 6.09613 6.27816 6.29226 6.49022 6.62632 6.77432 6.82256 6.90844 7.18121 7.48100 7.75265 7.94987 8.35596 8.87806 9.73965 10.22603 11.25887 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.014630 B = 0.003136 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.471900 B = 8927.850129 C =10269.243211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.204 3.796 3 C -0.227 4.227 4 C 0.213 3.787 5 N -0.452 5.452 6 C 0.447 3.553 7 N -0.498 5.498 8 C 0.244 3.756 9 C 0.610 3.390 10 O -0.509 6.509 11 N -0.697 5.697 12 C 0.132 3.868 13 C -0.117 4.117 14 H 0.083 0.917 15 C -0.120 4.120 16 C 0.133 3.867 17 N -0.610 5.610 18 C -0.243 4.243 19 H 0.093 0.907 20 C 0.021 3.979 21 N -0.907 5.907 22 Si 0.886 3.114 23 H -0.285 1.285 24 H -0.304 1.304 25 H -0.279 1.279 26 C 0.123 3.877 27 N -0.268 5.268 28 N -0.328 5.328 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.176 0.824 33 H 0.194 0.806 34 H 0.415 0.585 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.050 0.950 40 H 0.025 0.975 41 H 0.263 0.737 42 H 0.026 0.974 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.571 18.850 -14.160 28.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.086 3.914 3 C -0.252 4.252 4 C 0.026 3.974 5 N -0.167 5.167 6 C 0.087 3.913 7 N -0.231 5.231 8 C -0.040 4.040 9 C 0.389 3.611 10 O -0.382 6.382 11 N -0.349 5.349 12 C 0.009 3.991 13 C -0.137 4.137 14 H 0.102 0.898 15 C -0.159 4.159 16 C 0.007 3.993 17 N -0.337 5.337 18 C -0.370 4.370 19 H 0.111 0.889 20 C -0.178 4.178 21 N -0.551 5.551 22 Si 0.718 3.282 23 H -0.212 1.212 24 H -0.232 1.232 25 H -0.206 1.206 26 C -0.002 4.002 27 N -0.101 5.101 28 N -0.109 5.109 29 H 0.116 0.884 30 H 0.111 0.889 31 H 0.118 0.882 32 H 0.194 0.806 33 H 0.211 0.789 34 H 0.251 0.749 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.069 0.931 40 H 0.043 0.957 41 H 0.072 0.928 42 H 0.043 0.957 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -16.613 17.500 -13.916 27.854 hybrid contribution -0.186 1.875 -0.295 1.907 sum -16.799 19.375 -14.211 29.318 Atomic orbital electron populations 1.21103 0.86084 1.05821 1.05105 1.20977 0.96853 0.81832 0.91737 1.21863 0.95756 0.97942 1.09640 1.23676 0.91774 0.95814 0.86094 1.68101 1.36147 0.95012 1.17414 1.22711 0.78295 0.93645 0.96673 1.70877 1.28202 0.96505 1.27562 1.24238 0.85933 0.96860 0.97002 1.16260 0.84683 0.81891 0.78221 1.90846 1.33456 1.64784 1.49077 1.45829 1.07971 1.08642 1.72444 1.21607 0.97213 0.77260 1.03028 1.22477 0.93868 0.97779 0.99529 0.89839 1.22727 0.99506 0.93235 1.00429 1.21610 0.93522 0.93972 0.90184 1.44859 1.50414 1.17779 1.20659 1.18658 1.26504 0.95078 0.96744 0.88941 1.24958 0.99772 0.97509 0.95537 1.69865 1.50648 1.29457 1.05133 0.86932 0.77106 0.85378 0.78809 1.21201 1.23248 1.20573 1.21786 0.93338 0.91808 0.93287 1.78870 1.19227 0.82933 1.29115 1.49062 1.09209 1.06350 1.46323 0.88380 0.88949 0.88198 0.80622 0.78903 0.74858 0.90208 0.90560 0.90797 0.91125 0.93131 0.95747 0.92768 0.95651 0.93898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.52 10.13 36.01 0.36 -0.16 16 2 C 0.20 1.50 6.86 -81.58 -0.56 0.95 16 3 C -0.23 -0.92 9.72 -39.77 -0.39 -1.31 16 4 C 0.21 1.23 11.27 -17.07 -0.19 1.04 16 5 N -0.45 -5.30 10.48 -13.79 -0.14 -5.44 16 6 C 0.45 6.48 8.99 -323.05 -2.90 3.58 16 7 N -0.50 -8.39 10.89 -12.23 -0.13 -8.52 16 8 C 0.24 4.07 7.92 -156.79 -1.24 2.83 16 9 C 0.61 10.39 7.84 -12.20 -0.10 10.30 16 10 O -0.51 -9.59 17.07 5.35 0.09 -9.50 16 11 N -0.70 -11.10 5.43 -61.16 -0.33 -11.44 16 12 C 0.13 1.98 5.00 -4.04 -0.02 1.96 16 13 C -0.12 -1.92 2.98 -88.79 -0.26 -2.18 16 14 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 15 C -0.12 -1.84 6.54 -24.59 -0.16 -2.00 16 16 C 0.13 2.58 7.23 -2.53 -0.02 2.57 16 17 N -0.61 -15.04 3.22 -169.83 -0.55 -15.59 16 18 C -0.24 -7.07 10.56 -15.06 -0.16 -7.23 16 19 H 0.09 2.82 8.06 -52.48 -0.42 2.40 16 20 C 0.02 0.63 5.43 -17.43 -0.09 0.53 16 21 N -0.91 -28.78 13.97 55.49 0.78 -28.00 16 22 Si 0.89 23.73 24.38 -169.99 -4.15 19.58 16 23 H -0.28 -7.46 6.83 56.52 0.39 -7.07 16 24 H -0.30 -8.25 7.11 56.52 0.40 -7.84 16 25 H -0.28 -7.32 6.87 56.52 0.39 -6.93 16 26 C 0.12 2.71 4.55 -2.90 -0.01 2.69 16 27 N -0.27 -4.14 12.67 32.02 0.41 -3.73 16 28 N -0.33 -4.12 3.91 -10.07 -0.04 -4.16 16 29 H 0.10 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.10 0.10 8.09 -51.93 -0.42 -0.32 16 32 H 0.18 -0.10 8.06 -52.48 -0.42 -0.52 16 33 H 0.19 0.21 8.06 -52.49 -0.42 -0.21 16 34 H 0.42 6.63 8.07 -40.82 -0.33 6.30 16 35 H 0.08 1.27 8.01 -51.93 -0.42 0.86 16 36 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.07 1.10 8.05 -51.93 -0.42 0.68 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.26 7.93 8.31 -40.82 -0.34 7.59 16 42 H 0.03 0.62 3.55 -51.93 -0.18 0.43 16 43 H 0.04 1.01 7.73 -51.93 -0.40 0.61 16 LS Contribution 360.81 15.07 5.44 5.44 Total: -1.00 -39.40 360.81 -9.94 -49.34 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: -5.56 Total: -1.53 kcal Atomic # 6 Polarization: 19.30 SS G_CDS: -5.74 Total: 13.56 kcal Atomic # 7 Polarization: -76.87 SS G_CDS: -0.01 Total: -76.89 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.09 Total: -9.50 kcal Atomic # 14 Polarization: 23.73 SS G_CDS: -4.15 Total: 19.58 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -39.40 -9.94 -49.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028967987.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.100 kcal (2) G-P(sol) polarization free energy of solvation -39.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds