Wall clock time and date at job start Tue Mar 31 2020 05:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34821 * 125.89007 * 2 1 4 4 C 1.36478 * 107.60075 * 180.26575 * 3 2 1 5 5 C 1.48380 * 126.22947 * 179.97438 * 4 3 2 6 6 N 1.31338 * 126.50911 * 325.02140 * 5 4 3 7 7 N 1.39769 * 109.09284 * 179.97438 * 6 5 4 8 8 H 0.96998 * 125.15754 * 180.02562 * 7 6 5 9 9 C 1.34093 * 109.68358 * 0.02562 * 7 6 5 10 10 C 1.38036 * 107.87667 * 359.74223 * 9 7 6 11 11 C 1.47244 * 126.81094 * 180.24738 * 10 9 7 12 12 O 1.21632 * 119.99508 * 180.18050 * 11 10 9 13 13 N 1.34776 * 120.00452 * 0.17020 * 11 10 9 14 14 C 1.46504 * 119.99858 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.46816 * 180.02562 * 14 13 11 16 16 C 1.53948 * 113.73787 * 273.73977 * 15 14 13 17 17 N 1.47816 * 86.03347 * 222.08411 * 16 15 14 18 18 C 1.36939 * 134.45491 * 204.64380 * 17 16 15 19 19 H 1.07999 * 120.00140 * 179.86962 * 18 17 16 20 20 C 1.38814 * 120.00141 * 359.86779 * 18 17 16 21 21 N 1.31622 * 119.99645 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99991 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47502 * 89.99999 * 22 20 18 24 24 H 1.48504 * 109.47150 * 210.00048 * 22 20 18 25 25 H 1.48499 * 109.47017 * 329.99632 * 22 20 18 26 26 C 1.47581 * 91.05119 * 24.55087 * 17 16 15 27 27 C 1.40880 * 107.54644 * 359.97438 * 4 3 2 28 28 N 1.30663 * 108.09219 * 0.02562 * 27 4 3 29 29 H 1.09007 * 109.47244 * 269.71869 * 1 2 3 30 30 H 1.09004 * 109.47110 * 29.71026 * 1 2 3 31 31 H 1.08997 * 109.47750 * 149.71734 * 1 2 3 32 32 H 1.07998 * 126.19792 * 0.24390 * 3 2 1 33 33 H 1.08008 * 126.06172 * 180.02562 * 9 7 6 34 34 H 0.96996 * 119.99682 * 0.02562 * 13 11 10 35 35 H 1.08997 * 109.46696 * 299.99901 * 14 13 11 36 36 H 1.08996 * 109.47049 * 60.00645 * 14 13 11 37 37 H 1.08997 * 112.94569 * 45.32806 * 15 14 13 38 38 H 1.09000 * 113.77026 * 336.34949 * 16 15 14 39 39 H 1.09003 * 113.76882 * 107.74843 * 16 15 14 40 40 H 0.97009 * 119.99490 * 180.02562 * 21 20 18 41 41 H 1.09001 * 113.76890 * 221.15076 * 26 17 16 42 42 H 1.09000 * 113.76961 * 89.75493 * 26 17 16 43 43 H 1.08000 * 125.95874 * 179.97438 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2553 1.0922 0.0000 4 6 3.5511 0.6640 -0.0060 5 6 4.7594 1.5252 -0.0088 6 7 4.8913 2.6845 -0.6118 7 7 6.1770 3.1792 -0.3754 8 1 6.5224 4.0206 -0.7123 9 6 6.8604 2.3141 0.3880 10 6 6.0306 1.2466 0.6655 11 6 6.3585 0.0616 1.4757 12 8 5.5284 -0.8125 1.6384 13 7 7.5783 -0.0546 2.0369 14 6 7.9046 -1.2339 2.8426 15 6 9.3400 -1.1173 3.3592 16 6 10.3981 -1.6466 2.3740 17 7 11.0460 -2.2536 3.5558 18 6 12.3252 -2.6398 3.8557 19 1 12.5472 -3.0694 4.8213 20 6 13.3365 -2.4791 2.9185 21 7 13.0658 -1.9559 1.7414 22 14 15.0812 -3.0065 3.3273 23 1 15.2763 -4.4235 2.9283 24 1 16.0433 -2.1479 2.5908 25 1 15.3110 -2.8674 4.7878 26 6 9.7621 -2.2741 4.2831 27 6 3.5329 -0.7447 -0.0092 28 7 2.2857 -1.1344 -0.0058 29 1 -0.3634 -0.0050 1.0277 30 1 -0.3633 0.8926 -0.5093 31 1 -0.3634 -0.8874 -0.5182 32 1 1.9232 2.1199 0.0037 33 1 7.8782 2.4339 0.7293 34 1 8.2401 0.6426 1.9074 35 1 7.2189 -1.2978 3.6874 36 1 7.8104 -2.1302 2.2295 37 1 9.5686 -0.1298 3.7599 38 1 10.0103 -2.3757 1.6626 39 1 10.9896 -0.8623 1.9015 40 1 13.7725 -1.8440 1.0863 41 1 9.8467 -1.9900 5.3321 42 1 9.1871 -3.1879 4.1337 43 1 4.3988 -1.3902 -0.0144 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032118157.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:32 Heat of formation + Delta-G solvation = 176.532463 kcal Electronic energy + Delta-G solvation = -26906.792667 eV Core-core repulsion = 22992.628325 eV Total energy + Delta-G solvation = -3914.164342 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.46181 -40.77949 -39.05524 -37.80106 -34.35665 -33.60918 -32.24120 -32.18277 -30.67555 -29.59489 -28.54156 -26.94615 -25.79966 -24.76220 -23.11090 -22.66053 -21.80944 -21.12095 -19.93008 -19.62078 -19.09322 -18.28859 -16.88033 -16.73765 -16.25292 -15.63477 -15.58183 -15.26832 -14.91246 -14.77059 -14.39038 -14.32849 -14.01565 -13.69807 -13.32432 -13.05985 -13.03163 -12.89786 -12.64347 -12.47069 -12.27855 -11.38634 -11.30544 -11.13042 -10.98612 -10.84873 -10.69768 -10.55025 -10.17165 -9.99064 -9.72408 -9.66710 -9.43745 -9.35298 -9.00798 -8.79155 -8.65615 -8.21631 -6.86650 -5.76651 -3.08255 1.41239 1.47286 2.10972 2.34134 2.57539 3.06555 3.39159 3.44029 3.45780 3.49537 3.62583 4.22800 4.45993 4.46772 4.51419 4.69427 4.88134 5.01827 5.13242 5.14104 5.25281 5.32122 5.36014 5.40979 5.42902 5.57756 5.71039 5.88489 5.90943 6.11855 6.23358 6.32244 6.40933 6.60480 6.64908 6.71005 6.81828 6.83655 6.92697 7.23259 7.35751 7.37826 7.55862 7.67341 7.82388 7.98800 8.53817 9.05476 9.71482 10.61067 11.40615 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.021101 B = 0.002255 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.619877 B =12414.069575 C =13263.773342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.380 5.380 3 C 0.087 3.913 4 C -0.175 4.175 5 C 0.219 3.781 6 N -0.299 5.299 7 N -0.467 5.467 8 H 0.442 0.558 9 C 0.109 3.891 10 C -0.280 4.280 11 C 0.590 3.410 12 O -0.542 6.542 13 N -0.721 5.721 14 C 0.133 3.867 15 C -0.153 4.153 16 C 0.169 3.831 17 N -0.614 5.614 18 C -0.221 4.221 19 H 0.079 0.921 20 C -0.010 4.010 21 N -0.922 5.922 22 Si 0.911 3.089 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.128 3.872 27 C 0.119 3.881 28 N -0.306 5.306 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.176 0.824 33 H 0.189 0.811 34 H 0.397 0.603 35 H 0.062 0.938 36 H 0.069 0.931 37 H 0.088 0.912 38 H 0.028 0.972 39 H 0.071 0.929 40 H 0.253 0.747 41 H 0.044 0.956 42 H 0.037 0.963 43 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.475 12.919 -4.670 25.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.160 5.160 3 C -0.062 4.062 4 C -0.189 4.189 5 C 0.049 3.951 6 N -0.121 5.121 7 N -0.172 5.172 8 H 0.287 0.713 9 C -0.042 4.042 10 C -0.296 4.296 11 C 0.377 3.623 12 O -0.421 6.421 13 N -0.371 5.371 14 C 0.009 3.991 15 C -0.173 4.173 16 C 0.044 3.956 17 N -0.340 5.340 18 C -0.348 4.348 19 H 0.097 0.903 20 C -0.206 4.206 21 N -0.570 5.570 22 Si 0.742 3.258 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.206 1.206 26 C 0.001 3.999 27 C -0.069 4.069 28 N -0.126 5.126 29 H 0.093 0.907 30 H 0.104 0.896 31 H 0.108 0.892 32 H 0.193 0.807 33 H 0.206 0.794 34 H 0.231 0.769 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.107 0.893 38 H 0.046 0.954 39 H 0.089 0.911 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.054 0.946 43 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -23.235 12.090 -5.308 26.725 hybrid contribution 2.631 0.667 0.437 2.749 sum -20.604 12.757 -4.871 24.718 Atomic orbital electron populations 1.21842 0.74190 1.04408 1.03401 1.48390 1.06723 1.03934 1.56926 1.22463 0.90416 0.93354 0.99991 1.17616 0.89068 0.92369 1.19873 1.20856 0.91597 0.90519 0.92127 1.77308 0.97290 1.13011 1.24476 1.45869 1.10149 1.19823 1.41314 0.71332 1.23094 0.98236 0.90023 0.92822 1.21349 0.95414 0.99765 1.13028 1.17128 0.81839 0.84789 0.78496 1.90732 1.47915 1.41760 1.61643 1.45880 1.14166 1.24204 1.52844 1.21417 0.96075 0.87456 0.94138 1.23788 0.92562 1.00079 1.00836 1.22352 0.88520 0.95058 0.89687 1.46006 1.01898 1.73030 1.13079 1.19035 0.82215 1.34536 0.99041 0.90294 1.24777 0.98080 1.01702 0.96055 1.69817 1.31743 1.49631 1.05809 0.86125 0.84230 0.77988 0.77461 1.21637 1.21677 1.20641 1.22491 0.87583 0.94311 0.95479 1.24254 0.94892 0.93610 0.94165 1.77384 1.01753 1.07443 1.26032 0.90746 0.89591 0.89199 0.80688 0.79427 0.76949 0.91956 0.91312 0.89334 0.95429 0.91077 0.93718 0.93732 0.94584 0.78626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.61 11.46 59.84 0.69 1.29 16 2 N -0.38 -4.16 4.00 -67.89 -0.27 -4.43 16 3 C 0.09 0.94 11.45 -16.87 -0.19 0.75 16 4 C -0.18 -2.34 5.82 -105.36 -0.61 -2.95 16 5 C 0.22 2.84 7.27 -80.54 -0.59 2.25 16 6 N -0.30 -3.46 12.65 34.58 0.44 -3.02 16 7 N -0.47 -3.80 7.20 30.82 0.22 -3.58 16 8 H 0.44 1.95 8.96 -182.85 -1.64 0.32 16 9 C 0.11 0.92 11.50 -16.64 -0.19 0.73 16 10 C -0.28 -3.44 6.31 -102.95 -0.65 -4.09 16 11 C 0.59 8.45 7.81 -12.60 -0.10 8.35 16 12 O -0.54 -9.30 12.94 5.25 0.07 -9.23 16 13 N -0.72 -9.42 5.55 -61.44 -0.34 -9.76 16 14 C 0.13 2.01 5.51 -4.04 -0.02 1.98 16 15 C -0.15 -2.64 3.93 -89.69 -0.35 -2.99 16 16 C 0.17 3.79 7.08 -2.83 -0.02 3.77 16 17 N -0.61 -15.54 3.70 -177.70 -0.66 -16.20 16 18 C -0.22 -6.16 10.70 -15.06 -0.16 -6.33 16 19 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 20 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 21 N -0.92 -27.00 11.39 55.49 0.63 -26.37 16 22 Si 0.91 22.03 29.55 -169.99 -5.02 17.00 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 26 C 0.13 2.54 8.51 -2.97 -0.03 2.52 16 27 C 0.12 1.74 10.12 -17.05 -0.17 1.57 16 28 N -0.31 -4.39 12.54 30.81 0.39 -4.00 16 29 H 0.07 0.36 8.14 -51.92 -0.42 -0.06 16 30 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.18 1.31 8.06 -52.49 -0.42 0.89 16 33 H 0.19 0.89 7.48 -52.48 -0.39 0.50 16 34 H 0.40 4.24 7.43 -40.82 -0.30 3.94 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.07 1.14 7.88 -51.93 -0.41 0.73 16 37 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 38 H 0.03 0.65 7.92 -51.93 -0.41 0.24 16 39 H 0.07 1.74 7.17 -51.93 -0.37 1.36 16 40 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 41 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.04 0.70 8.10 -51.93 -0.42 0.28 16 43 H 0.20 2.99 6.37 -52.49 -0.33 2.65 16 LS Contribution 368.17 15.07 5.55 5.55 Total: -1.00 -37.43 368.17 -8.28 -45.72 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -6.79 Total: 1.83 kcal Atomic # 6 Polarization: 8.98 SS G_CDS: -2.50 Total: 6.49 kcal Atomic # 7 Polarization: -67.76 SS G_CDS: 0.41 Total: -67.35 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.07 Total: -9.23 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -37.43 -8.28 -45.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032118157.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 222.249 kcal (2) G-P(sol) polarization free energy of solvation -37.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 184.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 176.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds