Wall clock time and date at job start Tue Mar 31 2020 04:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.40171 * 119.82052 * 2 1 4 4 C 1.35677 * 119.27350 * 179.76579 * 3 2 1 5 5 C 1.50695 * 120.49005 * 180.24467 * 4 3 2 6 6 N 1.36173 * 119.02616 * 0.50416 * 4 3 2 7 7 N 1.40098 * 133.22373 * 179.76696 * 6 4 3 8 8 C 1.31987 * 106.92511 * 179.97438 * 7 6 4 9 9 C 1.48133 * 125.32626 * 180.02562 * 8 7 6 10 10 O 1.21516 * 119.99885 * 0.02562 * 9 8 7 11 11 N 1.34774 * 119.99781 * 180.02562 * 9 8 7 12 12 C 1.46501 * 119.99573 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.46939 * 180.02562 * 12 11 9 14 14 C 1.53951 * 113.74229 * 273.74146 * 13 12 11 15 15 N 1.47814 * 86.03588 * 222.08560 * 14 13 12 16 16 C 1.36942 * 134.45298 * 204.64561 * 15 14 13 17 17 H 1.08002 * 119.99706 * 173.35016 * 16 15 14 18 18 C 1.38811 * 119.99919 * 353.34323 * 16 15 14 19 19 N 1.31617 * 120.00490 * 5.07163 * 18 16 15 20 20 Si 1.86804 * 119.99734 * 185.06264 * 18 16 15 21 21 H 1.48501 * 109.46969 * 94.99458 * 20 18 16 22 22 H 1.48497 * 109.47265 * 214.99268 * 20 18 16 23 23 H 1.48495 * 109.47146 * 334.99517 * 20 18 16 24 24 C 1.47579 * 91.05069 * 24.55075 * 15 14 13 25 25 N 1.33467 * 109.35153 * 0.02562 * 8 7 6 26 26 C 1.32496 * 109.75633 * 359.97438 * 25 8 7 27 27 N 1.31262 * 119.82327 * 180.28160 * 2 1 3 28 28 H 1.09004 * 109.46968 * 269.72418 * 1 2 3 29 29 H 1.09004 * 109.47105 * 29.72356 * 1 2 3 30 30 H 1.08997 * 109.46796 * 149.71965 * 1 2 3 31 31 H 1.08003 * 120.36123 * 0.02570 * 3 2 1 32 32 H 1.08995 * 109.47674 * 270.26659 * 5 4 3 33 33 H 1.09000 * 109.47052 * 30.26923 * 5 4 3 34 34 H 1.09002 * 109.47600 * 150.26316 * 5 4 3 35 35 H 0.96998 * 120.00277 * 0.02562 * 11 9 8 36 36 H 1.08995 * 109.47334 * 300.00210 * 12 11 9 37 37 H 1.09003 * 109.46858 * 60.00426 * 12 11 9 38 38 H 1.08992 * 112.94932 * 45.33641 * 13 12 11 39 39 H 1.09001 * 113.77144 * 336.35083 * 14 13 12 40 40 H 1.09001 * 113.76924 * 107.74796 * 14 13 12 41 41 H 0.96998 * 120.00448 * 179.97438 * 19 18 16 42 42 H 1.09000 * 113.76738 * 221.14938 * 24 15 14 43 43 H 1.09000 * 113.76550 * 89.75653 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2041 1.2161 0.0000 4 6 3.5608 1.2032 0.0048 5 6 4.3377 2.4944 0.0105 6 7 4.2101 0.0062 -0.0009 7 7 5.5650 -0.3503 -0.0025 8 6 5.6152 -1.6692 -0.0083 9 6 6.8555 -2.4791 -0.0114 10 8 7.9396 -1.9301 -0.0081 11 7 6.7816 -3.8248 -0.0179 12 6 8.0082 -4.6257 -0.0215 13 6 7.6466 -6.1124 -0.0294 14 6 7.4101 -6.7002 1.3737 15 7 8.1754 -7.8725 0.8994 16 6 8.2216 -9.1946 1.2530 17 1 8.8048 -9.8901 0.6677 18 6 7.5189 -9.6409 2.3639 19 7 6.7295 -8.8159 3.0185 20 14 7.6936 -11.4126 2.9297 21 1 8.7276 -11.4932 3.9925 22 1 6.3942 -11.8914 3.4659 23 1 8.0978 -12.2617 1.7804 24 6 8.8674 -7.0468 -0.1092 25 7 4.3737 -2.1591 -0.0110 26 6 3.4994 -1.1635 -0.0064 27 7 2.1598 -1.1388 -0.0056 28 1 -0.3633 -0.0049 1.0277 29 1 -0.3633 0.8925 -0.5096 30 1 -0.3633 -0.8874 -0.5182 31 1 1.6670 2.1531 0.0004 32 1 4.5247 2.8105 -1.0157 33 1 3.7627 3.2621 0.5282 34 1 5.2878 2.3445 0.5233 35 1 5.9162 -4.2630 -0.0209 36 1 8.5936 -4.3899 -0.9102 37 1 8.5932 -4.3984 0.8697 38 1 6.8609 -6.3548 -0.7449 39 1 7.9048 -6.1460 2.1713 40 1 6.3635 -6.9152 1.5892 41 1 6.2383 -9.1278 3.7945 42 1 8.9822 -7.5381 -1.0754 43 1 9.7911 -6.5947 0.2519 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032169261.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:33 Heat of formation + Delta-G solvation = 131.006899 kcal Electronic energy + Delta-G solvation = -26731.606444 eV Core-core repulsion = 22815.467965 eV Total energy + Delta-G solvation = -3916.138478 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.19160 -41.17075 -40.08261 -39.50864 -36.57343 -35.97150 -34.23342 -33.56642 -32.65279 -30.81092 -30.17739 -28.84038 -28.03525 -26.56893 -25.89648 -24.25742 -23.63657 -22.76349 -21.74630 -20.75708 -19.63839 -19.31800 -18.74034 -18.30759 -18.10027 -17.20716 -16.98846 -16.48921 -16.08998 -15.85519 -15.57845 -15.25549 -15.03881 -14.79105 -14.62147 -14.49551 -14.20705 -14.06662 -13.84761 -13.43220 -13.34133 -13.10626 -13.05320 -12.90006 -12.87889 -12.66770 -12.55808 -12.25245 -11.93023 -11.73868 -11.67260 -11.51032 -11.24172 -11.12347 -10.86986 -10.80339 -10.26152 -9.97852 -8.91098 -7.91791 -5.24512 -0.79753 -0.58943 0.50562 0.52363 1.44661 1.47093 1.56007 1.57989 1.85433 2.06650 2.22114 2.47405 2.80972 3.10687 3.16847 3.28792 3.39890 3.69225 3.74672 3.98387 4.02410 4.18023 4.27678 4.33440 4.44864 4.52981 4.54940 4.64360 4.75084 4.80041 4.81331 4.82340 4.86750 4.87648 5.06016 5.08377 5.15210 5.22185 5.26139 5.33379 5.53526 5.63109 5.93101 6.06687 6.27680 6.54940 6.80645 6.91264 7.60597 8.56901 9.25971 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.017684 B = 0.002241 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.005467 B =12489.804533 C =13716.430149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.237 3.763 3 C -0.189 4.189 4 C 0.175 3.825 5 C -0.119 4.119 6 N -0.333 5.333 7 N -0.292 5.292 8 C 0.227 3.773 9 C 0.611 3.389 10 O -0.541 6.541 11 N -0.685 5.685 12 C 0.140 3.860 13 C -0.119 4.119 14 C 0.167 3.833 15 N -0.646 5.646 16 C -0.234 4.234 17 H 0.087 0.913 18 C -0.071 4.071 19 N -0.954 5.954 20 Si 0.979 3.021 21 H -0.289 1.289 22 H -0.295 1.295 23 H -0.264 1.264 24 C 0.131 3.869 25 N -0.532 5.532 26 C 0.435 3.565 27 N -0.497 5.497 28 H 0.113 0.887 29 H 0.132 0.868 30 H 0.081 0.919 31 H 0.236 0.764 32 H 0.110 0.890 33 H 0.142 0.858 34 H 0.067 0.933 35 H 0.418 0.582 36 H 0.092 0.908 37 H 0.067 0.933 38 H 0.104 0.896 39 H 0.015 0.985 40 H 0.036 0.964 41 H 0.248 0.752 42 H 0.066 0.934 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.314 29.383 -9.168 34.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.075 3.925 3 C -0.213 4.213 4 C 0.060 3.940 5 C -0.175 4.175 6 N -0.115 5.115 7 N -0.127 5.127 8 C -0.057 4.057 9 C 0.391 3.609 10 O -0.416 6.416 11 N -0.336 5.336 12 C 0.017 3.983 13 C -0.138 4.138 14 C 0.042 3.958 15 N -0.373 5.373 16 C -0.363 4.363 17 H 0.104 0.896 18 C -0.264 4.264 19 N -0.603 5.603 20 Si 0.807 3.193 21 H -0.216 1.216 22 H -0.221 1.221 23 H -0.189 1.189 24 C 0.006 3.994 25 N -0.268 5.268 26 C 0.075 3.925 27 N -0.216 5.216 28 H 0.131 0.869 29 H 0.150 0.850 30 H 0.100 0.900 31 H 0.253 0.747 32 H 0.128 0.872 33 H 0.160 0.840 34 H 0.086 0.914 35 H 0.255 0.745 36 H 0.110 0.890 37 H 0.085 0.915 38 H 0.122 0.878 39 H 0.033 0.967 40 H 0.055 0.945 41 H 0.057 0.943 42 H 0.084 0.916 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -14.157 28.548 -9.012 33.116 hybrid contribution 0.174 -0.870 0.870 1.243 sum -13.983 27.679 -8.142 32.061 Atomic orbital electron populations 1.21161 0.82668 1.06613 1.06006 1.23081 1.00164 0.86369 0.82921 1.22402 0.89997 1.02977 1.05897 1.21925 0.93495 0.86096 0.92446 1.21236 1.00362 0.89842 1.06088 1.49106 1.06242 1.09357 1.46798 1.78667 0.91181 1.12848 1.29990 1.23988 0.93057 0.89994 0.98632 1.16381 0.84449 0.82361 0.77694 1.90804 1.27797 1.72152 1.50889 1.45760 1.12147 1.04184 1.71479 1.21490 0.85233 0.88519 1.03093 1.23464 1.00011 0.91541 0.98833 1.22213 0.95852 0.85336 0.92450 1.46379 1.46477 1.03577 1.40847 1.19455 1.25165 0.83778 1.07885 0.89575 1.25710 1.00049 1.02445 0.98178 1.70029 1.32196 1.36175 1.21858 0.85049 0.76525 0.79412 0.78318 1.21609 1.22137 1.18864 1.22686 0.94022 0.89560 0.93165 1.70717 0.97899 1.28617 1.29609 1.22804 0.91022 0.81860 0.96827 1.68030 1.00341 1.31641 1.21601 0.86935 0.84958 0.90037 0.74724 0.87205 0.84017 0.91402 0.74481 0.88959 0.91471 0.87825 0.96724 0.94504 0.94330 0.91597 0.93004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.19 10.19 71.24 0.73 0.54 16 2 C 0.24 2.65 6.83 43.11 0.29 2.94 16 3 C -0.19 -1.03 9.39 22.15 0.21 -0.82 16 4 C 0.18 2.32 6.86 41.29 0.28 2.60 16 5 C -0.12 -0.71 10.12 71.23 0.72 0.01 16 6 N -0.33 -8.52 3.91 -185.77 -0.73 -9.24 16 7 N -0.29 -9.46 12.67 -52.60 -0.67 -10.12 16 8 C 0.23 7.94 7.92 137.40 1.09 9.03 16 9 C 0.61 21.83 7.84 86.87 0.68 22.51 16 10 O -0.54 -21.60 17.07 -3.77 -0.06 -21.67 16 11 N -0.68 -22.42 5.55 -465.70 -2.59 -25.01 16 12 C 0.14 4.50 5.51 86.38 0.48 4.97 16 13 C -0.12 -4.36 3.93 -10.13 -0.04 -4.40 16 14 C 0.17 8.20 6.99 86.44 0.60 8.81 16 15 N -0.65 -34.16 3.70 -716.06 -2.65 -36.81 16 16 C -0.23 -13.56 10.70 84.03 0.90 -12.66 16 17 H 0.09 4.72 7.83 -2.91 -0.02 4.70 16 18 C -0.07 -4.19 5.50 84.86 0.47 -3.72 16 19 N -0.95 -59.83 11.51 21.65 0.25 -59.58 16 20 Si 0.98 47.15 29.56 68.60 2.03 49.17 16 21 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 22 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 23 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 24 C 0.13 5.21 8.51 86.49 0.74 5.94 16 25 N -0.53 -18.51 10.89 -192.62 -2.10 -20.61 16 26 C 0.44 12.94 8.99 261.57 2.35 15.29 16 27 N -0.50 -11.74 10.40 -185.60 -1.93 -13.67 16 28 H 0.11 -0.04 8.14 -2.38 -0.02 -0.06 16 29 H 0.13 -0.82 8.09 -2.38 -0.02 -0.84 16 30 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.24 -1.69 8.06 -2.91 -0.02 -1.71 16 32 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.14 -0.39 8.09 -2.39 -0.02 -0.41 16 34 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.42 13.39 8.14 -92.71 -0.76 12.63 16 36 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 37 H 0.07 2.31 7.88 -2.39 -0.02 2.29 16 38 H 0.10 3.63 8.14 -2.39 -0.02 3.61 16 39 H 0.01 0.77 7.92 -2.39 -0.02 0.75 16 40 H 0.04 2.03 7.37 -2.39 -0.02 2.01 16 41 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 42 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 43 H 0.05 1.95 8.10 -2.39 -0.02 1.93 16 Total: -1.00 -89.84 372.62 1.35 -88.49 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: 0.30 Total: 8.00 kcal Atomic # 6 Polarization: 41.55 SS G_CDS: 9.49 Total: 51.05 kcal Atomic # 7 Polarization: -164.63 SS G_CDS: -10.41 Total: -175.03 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: -0.06 Total: -21.67 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 2.03 Total: 49.17 kcal Total: -89.84 1.35 -88.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032169261.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 219.496 kcal (2) G-P(sol) polarization free energy of solvation -89.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds