Wall clock time and date at job start Tue Mar 31 2020 05:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34775 * 120.00080 * 2 1 4 4 O 1.21542 * 120.00194 * 183.06812 * 3 2 1 5 5 C 1.47879 * 119.99883 * 3.06867 * 3 2 1 6 6 C 1.39457 * 121.11624 * 22.73343 * 5 3 2 7 7 C 1.38613 * 119.37275 * 180.02562 * 6 5 3 8 8 N 1.31583 * 121.64138 * 359.97438 * 7 6 5 9 9 C 1.32205 * 121.86296 * 0.02562 * 8 7 6 10 10 C 1.40868 * 121.11347 * 202.46187 * 5 3 2 11 11 N 1.34391 * 135.14620 * 0.72365 * 10 5 3 12 12 N 1.28692 * 109.15363 * 179.52504 * 11 10 5 13 13 N 1.28775 * 111.75852 * 359.73687 * 12 11 10 14 14 C 1.46506 * 125.87209 * 179.97438 * 13 12 11 15 15 C 1.46501 * 120.00040 * 179.97438 * 2 1 3 16 16 H 1.09000 * 110.88310 * 183.87871 * 15 2 1 17 17 C 1.55160 * 111.00135 * 60.00416 * 15 2 1 18 18 C 1.54324 * 102.93802 * 206.42530 * 17 15 2 19 19 N 1.47020 * 107.27745 * 22.18854 * 18 17 15 20 20 C 1.36929 * 125.65155 * 181.02338 * 19 18 17 21 21 H 1.08000 * 120.00148 * 186.18209 * 20 19 18 22 22 C 1.38811 * 120.00232 * 6.18928 * 20 19 18 23 23 N 1.31618 * 119.99754 * 8.14096 * 22 20 19 24 24 Si 1.86794 * 120.00235 * 187.86581 * 22 20 19 25 25 H 1.48493 * 109.47381 * 265.28884 * 24 22 20 26 26 H 1.48503 * 109.47126 * 25.29059 * 24 22 20 27 27 H 1.48507 * 109.47349 * 145.28855 * 24 22 20 28 28 C 1.47432 * 108.69865 * 1.28727 * 19 18 17 29 29 H 1.09002 * 109.47079 * 264.13061 * 1 2 3 30 30 H 1.09000 * 109.47220 * 24.12859 * 1 2 3 31 31 H 1.08997 * 109.47040 * 144.13117 * 1 2 3 32 32 H 1.07999 * 120.30906 * 0.02750 * 6 5 3 33 33 H 1.08003 * 119.17525 * 180.02562 * 7 6 5 34 34 H 1.09002 * 109.46554 * 270.02569 * 14 13 12 35 35 H 1.09006 * 109.46587 * 30.01901 * 14 13 12 36 36 H 1.08990 * 109.47210 * 150.02154 * 14 13 12 37 37 H 1.08997 * 110.72457 * 88.05867 * 17 15 2 38 38 H 1.08998 * 110.71584 * 324.78048 * 17 15 2 39 39 H 1.09008 * 109.88047 * 262.77334 * 18 17 15 40 40 H 1.09004 * 110.01230 * 141.68229 * 18 17 15 41 41 H 0.96999 * 120.00090 * 179.73192 * 23 22 20 42 42 H 1.09001 * 110.36426 * 94.48369 * 28 19 18 43 43 H 1.08993 * 110.36495 * 216.80280 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3530 1.1680 -0.0563 5 6 1.4011 2.4469 0.0686 6 6 0.1100 2.5073 0.5922 7 6 -0.5486 3.7261 0.6386 8 7 0.0142 4.8319 0.2006 9 6 1.2351 4.8401 -0.3066 10 6 1.9811 3.6469 -0.3877 11 7 3.1567 3.9857 -0.9437 12 7 3.1630 5.2506 -1.1802 13 7 2.0577 5.8081 -0.8254 14 6 1.7339 7.2312 -0.9539 15 6 2.1975 -1.2687 0.0006 16 1 3.2717 -1.0971 0.0694 17 6 1.8484 -2.1130 -1.2536 18 6 2.1064 -3.5588 -0.7796 19 7 2.0265 -3.5578 0.6884 20 6 2.2161 -4.6452 1.4987 21 1 2.0381 -4.5648 2.5609 22 6 2.6374 -5.8509 0.9550 23 7 3.0082 -5.9101 -0.3065 24 14 2.6855 -7.3878 2.0157 25 1 4.0506 -7.5619 2.5734 26 1 1.7101 -7.2527 3.1273 27 1 2.3337 -8.5707 1.1896 28 6 1.7021 -2.1935 1.1433 29 1 -0.3633 -0.1051 1.0223 30 1 -0.3634 0.9379 -0.4201 31 1 -0.3633 -0.8328 -0.6021 32 1 -0.3722 1.6128 0.9580 33 1 -1.5483 3.7692 1.0451 34 1 2.0416 7.7567 -0.0499 35 1 2.2602 7.6473 -1.8130 36 1 0.6595 7.3481 -1.0943 37 1 2.5043 -1.8570 -2.0856 38 1 0.8026 -1.9786 -1.5299 39 1 3.0981 -3.8814 -1.0966 40 1 1.3500 -4.2269 -1.1916 41 1 3.3063 -6.7518 -0.6854 42 1 0.6264 -2.0857 1.2822 43 1 2.2297 -1.9670 2.0697 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033361668.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:50 Heat of formation + Delta-G solvation = 167.548543 kcal Electronic energy + Delta-G solvation = -27989.990429 eV Core-core repulsion = 24075.436515 eV Total energy + Delta-G solvation = -3914.553914 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.64612 -40.45490 -38.93812 -37.34466 -35.32580 -35.13348 -32.94811 -31.79224 -31.14247 -29.23473 -28.33986 -27.67855 -27.23382 -25.56764 -24.41897 -23.94930 -22.68194 -20.45892 -20.15481 -19.38173 -19.15104 -17.89978 -17.35595 -17.25414 -16.97687 -16.23938 -15.51328 -15.38481 -14.92077 -14.65196 -14.22672 -14.11698 -13.97665 -13.63271 -13.42210 -13.35593 -13.00339 -12.84065 -12.52288 -12.42633 -12.25192 -12.04072 -11.80446 -11.62668 -11.25257 -10.93725 -10.85332 -10.79563 -10.39950 -10.21663 -10.09379 -9.85104 -9.75810 -9.59288 -9.46694 -9.21424 -8.66795 -8.43511 -6.85131 -5.71177 -3.08652 -0.20580 0.55603 1.57618 1.94586 2.67740 2.85837 3.29263 3.36277 3.40179 3.45423 3.47423 3.89599 3.98211 4.14994 4.26048 4.49719 4.56620 4.59628 4.78793 4.86261 4.99301 5.15903 5.22588 5.25169 5.38235 5.43016 5.46012 5.56871 5.62564 5.69553 5.80653 5.83521 6.02281 6.15226 6.26273 6.48920 6.52888 6.64385 6.89171 7.14136 7.42007 7.43813 7.63848 7.81384 7.95037 8.16024 8.25206 9.18287 9.79368 10.44056 11.37719 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.031800 B = 0.002488 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.300933 B =11251.900546 C =11659.957588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.590 5.590 3 C 0.549 3.451 4 O -0.504 6.504 5 C -0.004 4.004 6 C -0.164 4.164 7 C 0.156 3.844 8 N -0.460 5.460 9 C 0.208 3.792 10 C 0.003 3.997 11 N -0.216 5.216 12 N -0.006 5.006 13 N -0.312 5.312 14 C 0.092 3.908 15 C 0.124 3.876 16 H 0.110 0.890 17 C -0.151 4.151 18 C 0.171 3.829 19 N -0.600 5.600 20 C -0.230 4.230 21 H 0.078 0.922 22 C -0.007 4.007 23 N -0.918 5.918 24 Si 0.912 3.088 25 H -0.289 1.289 26 H -0.281 1.281 27 H -0.290 1.290 28 C 0.132 3.868 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.181 0.819 33 H 0.182 0.818 34 H 0.091 0.909 35 H 0.104 0.896 36 H 0.102 0.898 37 H 0.064 0.936 38 H 0.060 0.940 39 H 0.067 0.933 40 H 0.031 0.969 41 H 0.253 0.747 42 H 0.024 0.976 43 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.422 24.783 -0.760 27.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 N -0.322 5.322 3 C 0.335 3.665 4 O -0.378 6.378 5 C -0.020 4.020 6 C -0.187 4.187 7 C -0.016 4.016 8 N -0.174 5.174 9 C -0.034 4.034 10 C -0.126 4.126 11 N -0.090 5.090 12 N 0.012 4.988 13 N -0.113 5.113 14 C -0.049 4.049 15 C 0.020 3.980 16 H 0.128 0.872 17 C -0.190 4.190 18 C 0.046 3.954 19 N -0.327 5.327 20 C -0.359 4.359 21 H 0.096 0.904 22 C -0.204 4.204 23 N -0.565 5.565 24 Si 0.743 3.257 25 H -0.216 1.216 26 H -0.206 1.206 27 H -0.216 1.216 28 C 0.004 3.996 29 H 0.087 0.913 30 H 0.103 0.897 31 H 0.099 0.901 32 H 0.197 0.803 33 H 0.199 0.801 34 H 0.109 0.891 35 H 0.122 0.878 36 H 0.121 0.879 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.049 0.951 41 H 0.063 0.937 42 H 0.041 0.959 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -9.652 25.690 -1.466 27.482 hybrid contribution -0.677 -1.509 0.867 1.867 sum -10.329 24.180 -0.600 26.301 Atomic orbital electron populations 1.22546 0.80303 1.03940 1.02262 1.47697 1.06858 1.05775 1.71911 1.17927 0.87298 0.82814 0.78446 1.90866 1.12757 1.86437 1.47713 1.19676 0.93630 0.92013 0.96710 1.23333 0.93800 1.01645 0.99878 1.22878 0.99656 0.85648 0.93431 1.66248 1.07915 1.32187 1.11022 1.19771 0.92786 0.88056 1.02801 1.20122 0.93686 0.94211 1.04621 1.75557 1.17408 1.01947 1.14124 1.78272 1.03736 1.03473 1.13295 1.47034 1.10107 1.09724 1.44464 1.22279 1.04036 0.73443 1.05129 1.22623 0.97576 0.80335 0.97427 0.87206 1.23213 1.00482 0.98520 0.96823 1.21246 1.01654 0.88966 0.83485 1.44387 1.82956 1.03185 1.02174 1.19030 1.38960 0.87340 0.90530 0.90385 1.24832 1.00810 0.98201 0.96524 1.69949 1.49021 1.25145 1.12365 0.86098 0.77719 0.82800 0.79110 1.21575 1.20627 1.21628 1.21804 0.97078 0.85924 0.94761 0.91330 0.89746 0.90100 0.80254 0.80104 0.89100 0.87773 0.87948 0.91689 0.92146 0.91479 0.95083 0.93676 0.95875 0.93923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.51 7.47 59.85 0.45 0.96 16 2 N -0.59 -8.70 2.91 -172.45 -0.50 -9.20 16 3 C 0.55 8.96 7.56 -12.31 -0.09 8.87 16 4 O -0.50 -10.43 15.93 5.33 0.08 -10.34 16 5 C 0.00 -0.05 5.61 -104.50 -0.59 -0.64 16 6 C -0.16 -1.36 7.65 -38.99 -0.30 -1.66 16 7 C 0.16 1.09 11.14 -17.52 -0.20 0.89 16 8 N -0.46 -4.46 10.35 -12.38 -0.13 -4.59 16 9 C 0.21 2.49 8.08 -156.20 -1.26 1.23 16 10 C 0.00 0.05 6.97 -84.72 -0.59 -0.54 16 11 N -0.22 -3.60 12.14 32.23 0.39 -3.21 16 12 N -0.01 -0.08 13.07 60.35 0.79 0.70 16 13 N -0.31 -3.35 3.80 -67.22 -0.26 -3.61 16 14 C 0.09 0.45 11.41 59.85 0.68 1.14 16 15 C 0.12 2.27 3.47 -65.66 -0.23 2.05 16 16 H 0.11 2.31 7.03 -51.93 -0.36 1.95 16 17 C -0.15 -2.83 6.53 -24.89 -0.16 -2.99 16 18 C 0.17 4.11 5.46 -3.07 -0.02 4.09 16 19 N -0.60 -15.13 3.39 -169.93 -0.58 -15.70 16 20 C -0.23 -6.36 10.26 -15.06 -0.15 -6.52 16 21 H 0.08 2.08 7.84 -52.49 -0.41 1.66 16 22 C -0.01 -0.20 5.44 -17.43 -0.09 -0.29 16 23 N -0.92 -26.88 10.48 55.49 0.58 -26.30 16 24 Si 0.91 21.97 29.56 -169.99 -5.02 16.94 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 27 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 28 C 0.13 2.66 6.79 -2.41 -0.02 2.64 16 29 H 0.07 0.54 7.07 -51.93 -0.37 0.18 16 30 H 0.08 0.62 4.79 -51.93 -0.25 0.37 16 31 H 0.08 0.83 6.38 -51.93 -0.33 0.50 16 32 H 0.18 1.01 4.33 -52.49 -0.23 0.78 16 33 H 0.18 0.44 8.06 -52.48 -0.42 0.02 16 34 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 38 H 0.06 0.99 6.35 -51.93 -0.33 0.66 16 39 H 0.07 1.82 6.85 -51.92 -0.36 1.47 16 40 H 0.03 0.80 8.00 -51.93 -0.42 0.38 16 41 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 42 H 0.02 0.43 6.86 -51.93 -0.36 0.08 16 43 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 349.37 15.07 5.27 5.27 Total: -1.00 -37.29 349.37 -7.02 -44.31 By element: Atomic # 1 Polarization: 1.59 SS G_CDS: -5.08 Total: -3.49 kcal Atomic # 6 Polarization: 11.80 SS G_CDS: -2.57 Total: 9.23 kcal Atomic # 7 Polarization: -62.21 SS G_CDS: 0.30 Total: -61.91 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.08 Total: -10.34 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -37.29 -7.02 -44.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033361668.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 211.859 kcal (2) G-P(sol) polarization free energy of solvation -37.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 174.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 167.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds