Wall clock time and date at job start Tue Mar 31 2020 05:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34775 * 120.00080 * 2 1 4 4 O 1.21542 * 120.00194 * 183.06812 * 3 2 1 5 5 C 1.47879 * 119.99883 * 3.06867 * 3 2 1 6 6 C 1.39457 * 121.11624 * 22.73343 * 5 3 2 7 7 C 1.38613 * 119.37275 * 180.02562 * 6 5 3 8 8 N 1.31583 * 121.64138 * 359.97438 * 7 6 5 9 9 C 1.32205 * 121.86296 * 0.02562 * 8 7 6 10 10 C 1.40868 * 121.11347 * 202.46187 * 5 3 2 11 11 N 1.34391 * 135.14620 * 0.72365 * 10 5 3 12 12 N 1.28692 * 109.15363 * 179.52504 * 11 10 5 13 13 N 1.28775 * 111.75852 * 359.73687 * 12 11 10 14 14 C 1.46506 * 125.87209 * 179.97438 * 13 12 11 15 15 C 1.46501 * 120.00040 * 179.97438 * 2 1 3 16 16 H 1.09000 * 110.88310 * 183.87871 * 15 2 1 17 17 C 1.55160 * 111.00135 * 60.00416 * 15 2 1 18 18 C 1.54324 * 102.93802 * 206.42530 * 17 15 2 19 19 N 1.47020 * 107.27745 * 22.18854 * 18 17 15 20 20 C 1.36929 * 125.65155 * 181.02338 * 19 18 17 21 21 H 1.08000 * 120.00148 * 186.18209 * 20 19 18 22 22 C 1.38811 * 120.00232 * 6.18928 * 20 19 18 23 23 N 1.31618 * 119.99754 * 8.14096 * 22 20 19 24 24 Si 1.86794 * 120.00235 * 187.86581 * 22 20 19 25 25 H 1.48493 * 109.47381 * 265.28884 * 24 22 20 26 26 H 1.48503 * 109.47126 * 25.29059 * 24 22 20 27 27 H 1.48507 * 109.47349 * 145.28855 * 24 22 20 28 28 C 1.47432 * 108.69865 * 1.28727 * 19 18 17 29 29 H 1.09002 * 109.47079 * 264.13061 * 1 2 3 30 30 H 1.09000 * 109.47220 * 24.12859 * 1 2 3 31 31 H 1.08997 * 109.47040 * 144.13117 * 1 2 3 32 32 H 1.07999 * 120.30906 * 0.02750 * 6 5 3 33 33 H 1.08003 * 119.17525 * 180.02562 * 7 6 5 34 34 H 1.09002 * 109.46554 * 270.02569 * 14 13 12 35 35 H 1.09006 * 109.46587 * 30.01901 * 14 13 12 36 36 H 1.08990 * 109.47210 * 150.02154 * 14 13 12 37 37 H 1.08997 * 110.72457 * 88.05867 * 17 15 2 38 38 H 1.08998 * 110.71584 * 324.78048 * 17 15 2 39 39 H 1.09008 * 109.88047 * 262.77334 * 18 17 15 40 40 H 1.09004 * 110.01230 * 141.68229 * 18 17 15 41 41 H 0.96999 * 120.00090 * 179.73192 * 23 22 20 42 42 H 1.09001 * 110.36426 * 94.48369 * 28 19 18 43 43 H 1.08993 * 110.36495 * 216.80280 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3530 1.1680 -0.0563 5 6 1.4011 2.4469 0.0686 6 6 0.1100 2.5073 0.5922 7 6 -0.5486 3.7261 0.6386 8 7 0.0142 4.8319 0.2006 9 6 1.2351 4.8401 -0.3066 10 6 1.9811 3.6469 -0.3877 11 7 3.1567 3.9857 -0.9437 12 7 3.1630 5.2506 -1.1802 13 7 2.0577 5.8081 -0.8254 14 6 1.7339 7.2312 -0.9539 15 6 2.1975 -1.2687 0.0006 16 1 3.2717 -1.0971 0.0694 17 6 1.8484 -2.1130 -1.2536 18 6 2.1064 -3.5588 -0.7796 19 7 2.0265 -3.5578 0.6884 20 6 2.2161 -4.6452 1.4987 21 1 2.0381 -4.5648 2.5609 22 6 2.6374 -5.8509 0.9550 23 7 3.0082 -5.9101 -0.3065 24 14 2.6855 -7.3878 2.0157 25 1 4.0506 -7.5619 2.5734 26 1 1.7101 -7.2527 3.1273 27 1 2.3337 -8.5707 1.1896 28 6 1.7021 -2.1935 1.1433 29 1 -0.3633 -0.1051 1.0223 30 1 -0.3634 0.9379 -0.4201 31 1 -0.3633 -0.8328 -0.6021 32 1 -0.3722 1.6128 0.9580 33 1 -1.5483 3.7692 1.0451 34 1 2.0416 7.7567 -0.0499 35 1 2.2602 7.6473 -1.8130 36 1 0.6595 7.3481 -1.0943 37 1 2.5043 -1.8570 -2.0856 38 1 0.8026 -1.9786 -1.5299 39 1 3.0981 -3.8814 -1.0966 40 1 1.3500 -4.2269 -1.1916 41 1 3.3063 -6.7518 -0.6854 42 1 0.6264 -2.0857 1.2822 43 1 2.2297 -1.9670 2.0697 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033361668.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:49 Heat of formation + Delta-G solvation = 139.457388 kcal Electronic energy + Delta-G solvation = -27991.208553 eV Core-core repulsion = 24075.436515 eV Total energy + Delta-G solvation = -3915.772038 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.49655 -41.56554 -39.89828 -38.91042 -36.51795 -36.12367 -34.40712 -33.17685 -31.96618 -31.03854 -29.22834 -28.88612 -28.30616 -26.84099 -25.97125 -24.78028 -23.76799 -22.05875 -21.64232 -20.36141 -20.21168 -18.94197 -18.74687 -18.32847 -18.08932 -17.41568 -16.70123 -16.50456 -16.33294 -15.95992 -15.68337 -15.35505 -14.75750 -14.54796 -14.36823 -14.27513 -14.07838 -14.00329 -13.90949 -13.72576 -13.66800 -13.42120 -12.89399 -12.84835 -12.73042 -12.49928 -12.25253 -12.11568 -12.02089 -12.00957 -11.78855 -11.54247 -11.38142 -10.73882 -10.55732 -10.26072 -10.08103 -9.70880 -8.88989 -7.82581 -5.22644 -1.04513 -0.17998 0.91084 0.98379 1.47781 1.49515 1.58750 1.63997 1.72640 2.48759 2.51374 2.56705 3.10765 3.16808 3.32620 3.33706 3.64865 3.66793 3.86566 3.93121 4.01459 4.13185 4.21025 4.25337 4.25687 4.37262 4.54789 4.55957 4.59047 4.63463 4.66338 4.77114 4.82685 4.91259 5.04121 5.10955 5.13167 5.38372 5.41601 5.52217 5.59178 5.75783 6.20286 6.27224 6.42930 6.98214 7.05192 7.08256 7.75592 8.39410 9.25030 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.031800 B = 0.002488 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.300933 B =11251.900546 C =11659.957588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.584 5.584 3 C 0.546 3.454 4 O -0.566 6.566 5 C -0.039 4.039 6 C -0.127 4.127 7 C 0.175 3.825 8 N -0.456 5.456 9 C 0.199 3.801 10 C -0.028 4.028 11 N -0.278 5.278 12 N -0.026 5.026 13 N -0.297 5.297 14 C 0.078 3.922 15 C 0.138 3.862 16 H 0.072 0.928 17 C -0.133 4.133 18 C 0.180 3.820 19 N -0.623 5.623 20 C -0.241 4.241 21 H 0.086 0.914 22 C -0.067 4.067 23 N -0.950 5.950 24 Si 0.980 3.020 25 H -0.291 1.291 26 H -0.264 1.264 27 H -0.294 1.294 28 C 0.135 3.865 29 H 0.101 0.899 30 H 0.116 0.884 31 H 0.083 0.917 32 H 0.216 0.784 33 H 0.242 0.758 34 H 0.109 0.891 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.064 0.936 38 H 0.094 0.906 39 H 0.023 0.977 40 H 0.008 0.992 41 H 0.247 0.753 42 H 0.059 0.941 43 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.920 26.792 0.905 31.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 N -0.315 5.315 3 C 0.335 3.665 4 O -0.444 6.444 5 C -0.055 4.055 6 C -0.149 4.149 7 C 0.002 3.998 8 N -0.170 5.170 9 C -0.043 4.043 10 C -0.159 4.159 11 N -0.151 5.151 12 N -0.007 5.007 13 N -0.100 5.100 14 C -0.060 4.060 15 C 0.033 3.967 16 H 0.090 0.910 17 C -0.172 4.172 18 C 0.055 3.945 19 N -0.350 5.350 20 C -0.370 4.370 21 H 0.104 0.896 22 C -0.261 4.261 23 N -0.599 5.599 24 Si 0.808 3.192 25 H -0.218 1.218 26 H -0.188 1.188 27 H -0.220 1.220 28 C 0.009 3.991 29 H 0.120 0.880 30 H 0.133 0.867 31 H 0.101 0.899 32 H 0.232 0.768 33 H 0.258 0.742 34 H 0.127 0.873 35 H 0.139 0.861 36 H 0.140 0.860 37 H 0.083 0.917 38 H 0.112 0.888 39 H 0.041 0.959 40 H 0.026 0.974 41 H 0.056 0.944 42 H 0.077 0.923 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -14.180 27.769 0.200 31.181 hybrid contribution 0.575 -2.002 0.411 2.123 sum -13.605 25.767 0.611 29.145 Atomic orbital electron populations 1.23037 0.76720 1.05831 1.04717 1.47641 1.08815 1.03812 1.71252 1.18487 0.86850 0.84111 0.77063 1.90829 1.15638 1.87373 1.50570 1.19526 0.95656 0.89802 1.00541 1.23822 0.91186 1.03680 0.96238 1.23959 1.01104 0.84000 0.90778 1.66464 1.06433 1.33326 1.10797 1.19924 0.93453 0.87373 1.03555 1.20509 0.93773 0.95974 1.05629 1.75453 1.19641 1.03321 1.16666 1.78141 1.05184 1.03056 1.14352 1.47497 1.08996 1.11207 1.42289 1.22792 1.05636 0.70699 1.06876 1.22055 0.96212 0.81983 0.96443 0.90957 1.23020 1.02510 0.94897 0.96776 1.20955 0.98445 0.91716 0.83393 1.44664 1.82993 1.04743 1.02551 1.19453 1.37993 0.88308 0.91269 0.89619 1.25709 1.01204 1.01311 0.97827 1.70184 1.50361 1.25287 1.14087 0.85045 0.77682 0.78733 0.77755 1.21785 1.18809 1.22022 1.21937 0.98720 0.83743 0.94721 0.88047 0.86663 0.89884 0.76806 0.74188 0.87270 0.86097 0.85963 0.91736 0.88780 0.95899 0.97403 0.94386 0.92311 0.94637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.55 7.47 127.77 0.95 1.50 16 2 N -0.58 -16.30 2.91 -817.78 -2.38 -18.68 16 3 C 0.55 17.92 7.56 86.80 0.66 18.57 16 4 O -0.57 -25.03 15.93 -3.85 -0.06 -25.09 16 5 C -0.04 -0.98 5.61 -19.79 -0.11 -1.09 16 6 C -0.13 -1.47 7.65 22.65 0.17 -1.30 16 7 C 0.18 1.37 11.14 84.82 0.94 2.31 16 8 N -0.46 -6.95 10.35 -193.09 -2.00 -8.95 16 9 C 0.20 4.43 8.08 134.17 1.08 5.52 16 10 C -0.03 -0.82 6.97 40.06 0.28 -0.55 16 11 N -0.28 -9.84 12.14 -51.93 -0.63 -10.47 16 12 N -0.03 -0.75 13.07 37.02 0.48 -0.27 16 13 N -0.30 -6.17 3.80 -366.59 -1.39 -7.56 16 14 C 0.08 0.61 11.41 127.77 1.46 2.07 16 15 C 0.14 5.10 3.47 46.46 0.16 5.26 16 16 H 0.07 3.24 7.03 -2.39 -0.02 3.23 16 17 C -0.13 -4.98 6.53 31.78 0.21 -4.77 16 18 C 0.18 8.95 5.46 86.73 0.47 9.43 16 19 N -0.62 -31.77 3.39 -691.55 -2.35 -34.12 16 20 C -0.24 -13.45 10.26 84.03 0.86 -12.58 16 21 H 0.09 4.52 7.84 -2.91 -0.02 4.49 16 22 C -0.07 -3.85 5.44 84.86 0.46 -3.39 16 23 N -0.95 -57.86 10.48 21.65 0.23 -57.63 16 24 Si 0.98 45.74 29.56 68.60 2.03 47.77 16 25 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 26 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 27 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 28 C 0.13 5.31 6.79 86.93 0.59 5.90 16 29 H 0.10 0.93 7.07 -2.39 -0.02 0.91 16 30 H 0.12 1.03 4.79 -2.39 -0.01 1.02 16 31 H 0.08 1.30 6.38 -2.39 -0.02 1.28 16 32 H 0.22 0.91 4.33 -2.91 -0.01 0.89 16 33 H 0.24 -0.95 8.06 -2.91 -0.02 -0.98 16 34 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.12 0.54 8.14 -2.38 -0.02 0.52 16 36 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 37 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 38 H 0.09 2.89 6.35 -2.39 -0.02 2.88 16 39 H 0.02 1.32 6.85 -2.38 -0.02 1.31 16 40 H 0.01 0.42 8.00 -2.39 -0.02 0.40 16 41 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 42 H 0.06 1.95 6.86 -2.39 -0.02 1.93 16 43 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -91.43 349.37 3.19 -88.24 By element: Atomic # 1 Polarization: -1.20 SS G_CDS: 1.07 Total: -0.13 kcal Atomic # 6 Polarization: 18.70 SS G_CDS: 8.19 Total: 26.89 kcal Atomic # 7 Polarization: -129.64 SS G_CDS: -8.04 Total: -137.68 kcal Atomic # 8 Polarization: -25.03 SS G_CDS: -0.06 Total: -25.09 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -91.43 3.19 -88.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033361668.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 227.700 kcal (2) G-P(sol) polarization free energy of solvation -91.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds