Wall clock time and date at job start Tue Mar 31 2020 05:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34776 * 119.99938 * 2 1 4 4 O 1.21279 * 119.99921 * 179.97438 * 3 2 1 5 5 C 1.50704 * 119.99998 * 0.02562 * 3 2 1 6 6 C 1.50692 * 109.47015 * 180.02562 * 5 3 2 7 7 N 1.32617 * 125.18267 * 269.68915 * 6 5 3 8 8 C 1.32822 * 109.75814 * 179.85778 * 7 6 5 9 9 N 1.33822 * 132.50639 * 180.09185 * 8 7 6 10 10 C 1.31348 * 120.86744 * 180.33951 * 9 8 7 11 11 C 1.40037 * 120.31079 * 359.97438 * 10 9 8 12 12 C 1.35777 * 119.24536 * 0.04104 * 11 10 9 13 13 N 1.35983 * 119.01696 * 359.96230 * 12 11 10 14 14 N 1.31186 * 125.19184 * 89.99906 * 6 5 3 15 15 C 1.46498 * 119.99922 * 180.02562 * 2 1 3 16 16 H 1.09004 * 110.63933 * 178.31159 * 15 2 1 17 17 C 1.55161 * 110.87197 * 55.06255 * 15 2 1 18 18 C 1.55133 * 101.48397 * 205.89545 * 17 15 2 19 19 N 1.47421 * 104.72251 * 37.29996 * 18 17 15 20 20 C 1.36934 * 125.65030 * 155.81786 * 19 18 17 21 21 H 1.07996 * 119.99899 * 193.37640 * 20 19 18 22 22 C 1.38817 * 119.99852 * 13.37649 * 20 19 18 23 23 N 1.31616 * 119.99841 * 204.21004 * 22 20 19 24 24 Si 1.86799 * 120.00022 * 23.92761 * 22 20 19 25 25 H 1.48494 * 109.47449 * 270.28104 * 24 22 20 26 26 H 1.48501 * 109.46941 * 30.28093 * 24 22 20 27 27 H 1.48496 * 109.46798 * 150.27608 * 24 22 20 28 28 C 1.47023 * 108.70138 * 335.54938 * 19 18 17 29 29 H 1.09001 * 109.47244 * 269.99636 * 1 2 3 30 30 H 1.09001 * 109.47551 * 29.99821 * 1 2 3 31 31 H 1.09002 * 109.47646 * 150.00314 * 1 2 3 32 32 H 1.09009 * 109.46851 * 300.00016 * 5 3 2 33 33 H 1.08998 * 109.46906 * 59.99577 * 5 3 2 34 34 H 1.08004 * 119.84018 * 179.97438 * 10 9 8 35 35 H 1.08006 * 120.37974 * 180.02562 * 11 10 9 36 36 H 1.07991 * 120.49496 * 179.97438 * 12 11 10 37 37 H 1.08997 * 111.00574 * 324.14045 * 17 15 2 38 38 H 1.09005 * 110.99995 * 87.95197 * 17 15 2 39 39 H 1.08999 * 110.49555 * 278.45206 * 18 17 15 40 40 H 1.09000 * 110.33859 * 156.06365 * 18 17 15 41 41 H 0.97006 * 119.99847 * 354.28405 * 23 22 20 42 42 H 1.09002 * 109.88564 * 120.70737 * 28 19 18 43 43 H 1.09004 * 109.88323 * 241.87205 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3516 1.1672 0.0005 5 6 1.3853 2.4723 0.0006 6 6 2.3646 3.6177 -0.0002 7 7 2.8575 4.2023 1.0833 8 6 3.6931 5.1722 0.7294 9 7 4.4298 6.0348 1.4394 10 6 5.1889 6.9243 0.8412 11 6 5.2401 6.9840 -0.5569 12 6 4.4958 6.1131 -1.2858 13 7 3.7201 5.2043 -0.6365 14 7 2.8550 4.1923 -1.0726 15 6 2.1974 -1.2687 -0.0006 16 1 3.2726 -1.0916 -0.0305 17 6 1.7548 -2.1621 -1.1895 18 6 2.0759 -3.5795 -0.6470 19 7 1.7365 -3.5179 0.7863 20 6 1.4059 -4.5875 1.5748 21 1 0.9667 -4.4255 2.5481 22 6 1.6352 -5.8800 1.1232 23 7 0.9284 -6.8804 1.6047 24 14 2.9416 -6.1982 -0.1735 25 1 2.3340 -6.0935 -1.5244 26 1 4.0270 -5.1935 -0.0396 27 1 3.5024 -7.5605 0.0129 28 6 1.8182 -2.1188 1.2303 29 1 -0.3634 -0.0001 1.0277 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3634 -0.8900 -0.5138 32 1 0.7583 2.5302 -0.8892 33 1 0.7590 2.5298 0.8908 34 1 5.7764 7.6128 1.4305 35 1 5.8642 7.7146 -1.0500 36 1 4.5197 6.1415 -2.3650 37 1 0.6892 -2.0482 -1.3882 38 1 2.3420 -1.9441 -2.0816 39 1 3.1339 -3.8073 -0.7770 40 1 1.4617 -4.3260 -1.1506 41 1 0.3061 -6.7282 2.3331 42 1 0.8526 -1.7965 1.6201 43 1 2.5832 -2.0182 2.0002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033663325.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:24 Heat of formation + Delta-G solvation = 149.630404 kcal Electronic energy + Delta-G solvation = -27472.010581 eV Core-core repulsion = 23556.679678 eV Total energy + Delta-G solvation = -3915.330903 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.25807 -40.18001 -39.13653 -37.61882 -35.00224 -34.96193 -32.90628 -32.23119 -31.07349 -30.16006 -29.21856 -28.03009 -26.74829 -25.15282 -24.31145 -23.77887 -22.07900 -20.93572 -20.22385 -18.93642 -18.79861 -18.44609 -17.56639 -17.41326 -16.81798 -16.64467 -16.07075 -15.62409 -15.06815 -14.97935 -14.51849 -13.87004 -13.75308 -13.51282 -13.42425 -13.34325 -13.16925 -13.01500 -12.96889 -12.51837 -12.42972 -12.31343 -12.12486 -11.67117 -11.32922 -11.08928 -10.97835 -10.66998 -10.49581 -10.40984 -10.15281 -9.97893 -9.74419 -9.53948 -9.22578 -9.18723 -8.56648 -8.45744 -7.07242 -6.29993 -3.19945 -0.01725 0.30454 1.48901 2.09006 2.56855 2.78289 2.98882 3.13106 3.42704 3.50967 3.55451 3.69439 3.81113 4.07147 4.34110 4.43091 4.54310 4.60649 4.81135 4.92428 5.03111 5.03757 5.07945 5.18263 5.29645 5.36009 5.41746 5.50792 5.56591 5.71776 5.74036 5.83057 5.86417 5.89214 5.97995 6.24313 6.38861 6.51863 6.57712 6.75101 6.78523 7.01408 7.40058 7.58363 7.72260 8.12860 8.35566 9.04975 9.59359 10.26491 11.17388 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.028491 B = 0.002298 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.532088 B =12183.832079 C =12336.253815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.599 5.599 3 C 0.524 3.476 4 O -0.533 6.533 5 C -0.051 4.051 6 C 0.302 3.698 7 N -0.510 5.510 8 C 0.442 3.558 9 N -0.453 5.453 10 C 0.204 3.796 11 C -0.227 4.227 12 C 0.174 3.826 13 N -0.326 5.326 14 N -0.322 5.322 15 C 0.127 3.873 16 H 0.106 0.894 17 C -0.139 4.139 18 C 0.106 3.894 19 N -0.607 5.607 20 C -0.325 4.325 21 H 0.075 0.925 22 C -0.020 4.020 23 N -0.921 5.921 24 Si 1.064 2.936 25 H -0.293 1.293 26 H -0.286 1.286 27 H -0.299 1.299 28 C 0.128 3.872 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.124 0.876 33 H 0.130 0.870 34 H 0.191 0.809 35 H 0.175 0.825 36 H 0.183 0.817 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.034 0.966 40 H 0.064 0.936 41 H 0.262 0.738 42 H 0.035 0.965 43 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.895 31.599 -8.722 33.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.331 5.331 3 C 0.309 3.691 4 O -0.410 6.410 5 C -0.094 4.094 6 C 0.020 3.980 7 N -0.241 5.241 8 C 0.082 3.918 9 N -0.167 5.167 10 C 0.018 3.982 11 C -0.252 4.252 12 C 0.036 3.964 13 N -0.105 5.105 14 N -0.153 5.153 15 C 0.024 3.976 16 H 0.124 0.876 17 C -0.178 4.178 18 C -0.020 4.020 19 N -0.335 5.335 20 C -0.452 4.452 21 H 0.093 0.907 22 C -0.221 4.221 23 N -0.562 5.562 24 Si 0.896 3.104 25 H -0.221 1.221 26 H -0.213 1.213 27 H -0.227 1.227 28 C 0.001 3.999 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.102 0.898 32 H 0.142 0.858 33 H 0.148 0.852 34 H 0.208 0.792 35 H 0.192 0.808 36 H 0.200 0.800 37 H 0.094 0.906 38 H 0.088 0.912 39 H 0.051 0.949 40 H 0.082 0.918 41 H 0.073 0.927 42 H 0.053 0.947 43 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 4.589 29.675 -9.012 31.351 hybrid contribution -0.396 1.479 0.190 1.543 sum 4.193 31.154 -8.822 32.649 Atomic orbital electron populations 1.21900 0.79291 1.03490 1.02616 1.47738 1.07170 1.05510 1.72723 1.19975 0.87846 0.84571 0.76685 1.90736 1.13790 1.87056 1.49384 1.20108 0.95179 0.86923 1.07167 1.23532 0.94545 0.94806 0.85095 1.70693 1.15165 1.09852 1.28414 1.22722 0.95537 0.94893 0.78657 1.68015 1.07960 1.04481 1.36220 1.23598 0.90399 0.91651 0.92554 1.21958 1.04491 1.03161 0.95555 1.22177 0.87679 0.85696 1.00851 1.48775 1.29351 1.23034 1.09353 1.78528 1.12071 1.04230 1.20452 1.22231 0.97435 0.81389 0.96590 0.87573 1.23153 1.01577 0.96205 0.96893 1.22064 0.98543 0.94973 0.86392 1.44772 1.82024 1.02273 1.04385 1.20042 1.38483 0.84641 1.02077 0.90681 1.25892 1.01330 0.90916 1.03947 1.70913 1.24836 1.33851 1.26644 0.83850 0.76803 0.74583 0.75118 1.22110 1.21304 1.22651 1.21575 0.98625 0.85710 0.93940 0.91884 0.91130 0.89840 0.85758 0.85229 0.79239 0.80780 0.80025 0.90625 0.91213 0.94869 0.91811 0.92741 0.94737 0.95114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.74 9.13 59.85 0.55 1.29 16 2 N -0.60 -8.67 2.89 -171.83 -0.50 -9.17 16 3 C 0.52 7.98 7.67 -10.98 -0.08 7.89 16 4 O -0.53 -10.51 15.40 5.56 0.09 -10.42 16 5 C -0.05 -0.58 4.88 -29.04 -0.14 -0.73 16 6 C 0.30 4.36 6.59 -157.01 -1.03 3.33 16 7 N -0.51 -8.20 11.25 -11.80 -0.13 -8.33 16 8 C 0.44 6.17 8.99 -323.14 -2.91 3.26 16 9 N -0.45 -5.07 10.48 -13.82 -0.14 -5.22 16 10 C 0.20 1.08 11.27 -17.08 -0.19 0.89 16 11 C -0.23 -0.74 10.06 -39.79 -0.40 -1.14 16 12 C 0.17 1.09 11.32 -16.59 -0.19 0.90 16 13 N -0.33 -3.87 3.91 -13.84 -0.05 -3.93 16 14 N -0.32 -4.49 12.78 32.39 0.41 -4.08 16 15 C 0.13 2.26 3.35 -66.10 -0.22 2.04 16 16 H 0.11 2.07 6.99 -51.93 -0.36 1.71 16 17 C -0.14 -2.38 6.63 -24.46 -0.16 -2.54 16 18 C 0.11 2.32 4.70 -2.41 -0.01 2.30 16 19 N -0.61 -15.09 3.26 -169.93 -0.55 -15.65 16 20 C -0.33 -9.40 10.45 -15.06 -0.16 -9.56 16 21 H 0.08 2.29 8.06 -52.49 -0.42 1.87 16 22 C -0.02 -0.61 5.43 -17.43 -0.09 -0.70 16 23 N -0.92 -29.00 13.70 55.49 0.76 -28.24 16 24 Si 1.06 27.04 24.68 -169.99 -4.20 22.84 16 25 H -0.29 -6.97 6.61 56.52 0.37 -6.59 16 26 H -0.29 -7.00 6.20 56.52 0.35 -6.65 16 27 H -0.30 -7.68 7.11 56.52 0.40 -7.28 16 28 C 0.13 2.70 6.88 -3.06 -0.02 2.68 16 29 H 0.06 0.64 7.89 -51.93 -0.41 0.24 16 30 H 0.07 0.49 6.44 -51.93 -0.33 0.16 16 31 H 0.08 0.94 6.09 -51.93 -0.32 0.62 16 32 H 0.12 0.99 7.40 -51.92 -0.38 0.61 16 33 H 0.13 1.18 8.11 -51.93 -0.42 0.76 16 34 H 0.19 0.13 8.06 -52.48 -0.42 -0.29 16 35 H 0.17 -0.22 8.06 -52.48 -0.42 -0.64 16 36 H 0.18 0.51 8.06 -52.49 -0.42 0.08 16 37 H 0.08 1.18 6.11 -51.93 -0.32 0.86 16 38 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.03 0.75 5.55 -51.93 -0.29 0.46 16 40 H 0.06 1.46 6.25 -51.93 -0.32 1.13 16 41 H 0.26 8.16 8.73 -40.82 -0.36 7.80 16 42 H 0.03 0.70 6.94 -51.93 -0.36 0.34 16 43 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 350.63 15.07 5.28 5.28 Total: -1.00 -41.50 350.63 -9.39 -50.89 By element: Atomic # 1 Polarization: 1.40 SS G_CDS: -5.29 Total: -3.89 kcal Atomic # 6 Polarization: 14.97 SS G_CDS: -5.07 Total: 9.90 kcal Atomic # 7 Polarization: -74.40 SS G_CDS: -0.21 Total: -74.60 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.09 Total: -10.42 kcal Atomic # 14 Polarization: 27.04 SS G_CDS: -4.20 Total: 22.84 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -41.50 -9.39 -50.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033663325.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.522 kcal (2) G-P(sol) polarization free energy of solvation -41.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 159.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 149.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds