Wall clock time and date at job start Tue Mar 31 2020 05:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46499 * 109.46666 * 2 1 4 4 C 1.34778 * 119.99759 * 264.40156 * 3 2 1 5 5 O 1.21570 * 120.00052 * 43.35413 * 4 3 2 6 6 C 1.47723 * 120.00120 * 223.34893 * 4 3 2 7 7 C 1.40122 * 120.35002 * 323.58284 * 6 4 3 8 8 N 1.31262 * 121.14953 * 179.97438 * 7 6 4 9 9 C 1.32716 * 121.79930 * 0.02562 * 8 7 6 10 10 N 1.37112 * 133.40383 * 180.02562 * 9 8 7 11 11 H 0.97000 * 126.59409 * 0.02562 * 10 9 8 12 12 N 1.40192 * 106.82014 * 179.97438 * 10 9 8 13 13 N 1.28671 * 109.50995 * 359.97438 * 12 10 9 14 14 C 1.35328 * 109.99878 * 0.02562 * 13 12 10 15 15 C 1.39425 * 120.35386 * 143.30335 * 6 4 3 16 16 C 1.46499 * 119.99900 * 84.68079 * 3 2 1 17 17 H 1.08998 * 110.88955 * 339.25188 * 16 3 2 18 18 C 1.55154 * 111.00402 * 103.14000 * 16 3 2 19 19 C 1.54324 * 102.94563 * 153.57344 * 18 16 3 20 20 N 1.47025 * 107.26819 * 337.80495 * 19 18 16 21 21 C 1.36938 * 125.64561 * 178.98390 * 20 19 18 22 22 H 1.08004 * 120.00178 * 179.97438 * 21 20 19 23 23 C 1.38813 * 120.00309 * 359.97438 * 21 20 19 24 24 N 1.31620 * 119.99751 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 120.00197 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47207 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47581 * 119.99738 * 25 23 21 28 28 H 1.48497 * 109.47126 * 239.99946 * 25 23 21 29 29 C 1.47423 * 108.70532 * 358.94160 * 20 19 18 30 30 H 1.08995 * 109.46847 * 60.00214 * 1 2 3 31 31 H 1.09004 * 109.46705 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.46810 * 299.99884 * 1 2 3 33 33 H 1.08994 * 109.46810 * 240.00115 * 2 1 3 34 34 H 1.08995 * 109.46847 * 119.99786 * 2 1 3 35 35 H 1.07998 * 119.42452 * 359.97438 * 7 6 4 36 36 H 1.07999 * 120.95160 * 359.97438 * 15 6 4 37 37 H 1.09002 * 110.71783 * 271.93422 * 18 16 3 38 38 H 1.09000 * 110.72219 * 35.20754 * 18 16 3 39 39 H 1.09005 * 109.88408 * 97.22098 * 19 18 16 40 40 H 1.08995 * 109.88619 * 218.38655 * 19 18 16 41 41 H 0.97001 * 119.99899 * 179.97438 * 24 23 21 42 42 H 1.09006 * 110.36487 * 265.29045 * 29 20 19 43 43 H 1.08994 * 110.36911 * 142.96508 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3502 1.9786 -1.1617 5 8 1.6360 1.8502 -2.1370 6 6 3.5819 2.7895 -1.2498 7 6 3.9936 3.5720 -0.1628 8 7 5.0855 4.2980 -0.2237 9 6 5.8467 4.3263 -1.3105 10 7 7.0081 4.9811 -1.6305 11 1 7.5070 5.5860 -1.0595 12 7 7.3365 4.6076 -2.9412 13 7 6.4501 3.7898 -3.3899 14 6 5.5046 3.5692 -2.4472 15 6 4.3501 2.7798 -2.4132 16 6 2.1515 2.1110 1.2633 17 1 1.5317 1.6615 2.0390 18 6 3.6357 2.1838 1.7097 19 6 3.6767 3.4671 2.5658 20 7 2.5363 4.3006 2.1577 21 6 2.2053 5.5172 2.6922 22 1 1.3444 6.0537 2.3215 23 6 2.9762 6.0608 3.7106 24 7 4.0250 5.4067 4.1629 25 14 2.5242 7.7199 4.4403 26 1 1.3114 8.2447 3.7629 27 1 2.2529 7.5650 5.8920 28 1 3.6493 8.6693 4.2455 29 6 1.8089 3.6103 1.0771 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.4023 3.5779 0.7409 36 1 4.0603 2.1827 -3.2652 37 1 3.9015 1.3124 2.3081 38 1 4.2942 2.2753 0.8459 39 1 3.5897 3.2113 3.6218 40 1 4.6094 4.0021 2.3875 41 1 4.5639 5.7867 4.8743 42 1 2.1536 3.9603 0.1040 43 1 0.7356 3.7698 1.1802 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033854739.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:11 Heat of formation + Delta-G solvation = 228.044503 kcal Electronic energy + Delta-G solvation = -29721.622472 eV Core-core repulsion = 25809.691859 eV Total energy + Delta-G solvation = -3911.930612 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.48809 -41.30329 -38.57543 -37.69888 -35.34095 -33.88396 -32.85334 -31.67561 -30.89656 -29.99571 -29.42368 -27.43790 -25.39820 -24.64642 -24.26071 -22.80030 -22.54640 -21.44527 -20.40761 -19.74675 -18.53444 -17.75430 -17.55459 -17.01273 -16.36342 -16.01198 -15.69016 -15.11755 -14.77521 -14.70915 -14.09804 -13.89382 -13.73539 -13.59767 -13.18600 -12.75861 -12.53782 -12.43384 -12.16233 -12.11468 -12.03814 -11.93248 -11.47459 -11.41071 -11.24286 -11.15030 -11.06584 -10.85532 -10.54881 -10.18330 -10.12935 -9.99362 -9.90762 -9.20907 -9.04005 -8.91536 -8.67928 -8.37412 -7.13570 -5.90722 -3.28272 0.34106 0.79125 2.13911 2.18427 2.46573 2.92519 3.30954 3.37922 3.39431 3.68902 3.93341 4.28299 4.37680 4.43402 4.59625 4.70975 4.84781 4.88834 5.06338 5.10901 5.26173 5.31007 5.32920 5.39347 5.41760 5.56991 5.65200 5.68720 5.77011 5.83582 5.92503 6.03765 6.14243 6.24077 6.27030 6.30592 6.54988 6.78295 6.81136 7.29803 7.34732 7.38119 7.64574 7.73403 7.91255 7.98402 7.99978 8.96714 9.56179 10.12489 11.19837 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.008952 B = 0.005996 C = 0.003927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3127.156097 B = 4668.287293 C = 7128.736465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.127 3.873 3 N -0.636 5.636 4 C 0.601 3.399 5 O -0.506 6.506 6 C -0.235 4.235 7 C 0.174 3.826 8 N -0.483 5.483 9 C 0.301 3.699 10 N -0.486 5.486 11 H 0.453 0.547 12 N -0.002 5.002 13 N -0.196 5.196 14 C -0.097 4.097 15 C 0.067 3.933 16 C 0.127 3.873 17 H 0.112 0.888 18 C -0.194 4.194 19 C 0.157 3.843 20 N -0.589 5.589 21 C -0.241 4.241 22 H 0.083 0.917 23 C 0.005 3.995 24 N -0.912 5.912 25 Si 0.914 3.086 26 H -0.278 1.278 27 H -0.289 1.289 28 H -0.289 1.289 29 C 0.087 3.913 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.266 0.734 36 H 0.154 0.846 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.062 0.938 40 H 0.071 0.929 41 H 0.255 0.745 42 H 0.037 0.963 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.016 -9.646 -6.490 11.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.005 3.995 3 N -0.371 5.371 4 C 0.389 3.611 5 O -0.380 6.380 6 C -0.245 4.245 7 C 0.005 3.995 8 N -0.197 5.197 9 C 0.056 3.944 10 N -0.211 5.211 11 H 0.301 0.699 12 N 0.016 4.984 13 N -0.078 5.078 14 C -0.223 4.223 15 C 0.036 3.964 16 C 0.023 3.977 17 H 0.130 0.870 18 C -0.233 4.233 19 C 0.033 3.967 20 N -0.317 5.317 21 C -0.368 4.368 22 H 0.101 0.899 23 C -0.193 4.193 24 N -0.558 5.558 25 Si 0.744 3.256 26 H -0.203 1.203 27 H -0.215 1.215 28 H -0.216 1.216 29 C -0.040 4.040 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.279 0.721 36 H 0.172 0.828 37 H 0.095 0.905 38 H 0.099 0.901 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.066 0.934 42 H 0.054 0.946 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.999 -8.895 -7.398 11.612 hybrid contribution -0.506 0.758 0.903 1.283 sum 0.492 -8.137 -6.495 10.422 Atomic orbital electron populations 1.22223 0.96023 1.01738 1.03084 1.21374 0.94634 0.80971 1.02531 1.47397 1.69437 1.14578 1.05704 1.17697 0.83108 0.77613 0.82689 1.90744 1.49928 1.58534 1.38747 1.21202 1.00077 1.06276 0.96903 1.27421 0.89657 0.82775 0.99684 1.67312 1.06418 1.23162 1.22850 1.20075 0.89169 0.92461 0.92728 1.47464 1.19832 1.39829 1.14004 0.69930 1.81615 1.17060 1.10197 0.89547 1.74758 1.00063 1.08790 1.24148 1.20266 1.00824 1.07655 0.93550 1.20812 0.87936 0.91403 0.96206 1.22544 0.97220 0.92960 0.85001 0.86996 1.24412 0.96025 1.01933 1.00976 1.21544 0.92364 0.86106 0.96642 1.44666 1.28697 1.19834 1.38473 1.19068 1.10208 0.93044 1.14516 0.89869 1.24815 0.97130 0.98831 0.98495 1.69932 1.17885 1.37972 1.30005 0.86023 0.77732 0.83066 0.78752 1.20330 1.21532 1.21571 1.22479 0.98255 0.89623 0.93602 0.91673 0.92106 0.92250 0.90812 0.90346 0.72106 0.82847 0.90525 0.90117 0.92025 0.91111 0.93421 0.94590 0.92128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.74 10.23 37.16 0.38 -1.36 16 2 C 0.13 1.34 6.13 -4.04 -0.02 1.32 16 3 N -0.64 -8.67 2.55 -164.82 -0.42 -9.09 16 4 C 0.60 9.42 5.65 -12.38 -0.07 9.35 16 5 O -0.51 -8.78 17.34 5.30 0.09 -8.69 16 6 C -0.24 -3.81 5.14 -104.87 -0.54 -4.35 16 7 C 0.17 3.14 4.82 -17.09 -0.08 3.05 16 8 N -0.48 -9.11 10.15 -26.56 -0.27 -9.38 16 9 C 0.30 5.14 8.49 -155.93 -1.32 3.81 16 10 N -0.49 -7.04 7.52 31.15 0.23 -6.80 16 11 H 0.45 5.16 8.96 -182.53 -1.64 3.53 16 12 N 0.00 -0.02 13.82 60.35 0.83 0.81 16 13 N -0.20 -3.16 12.40 32.17 0.40 -2.76 16 14 C -0.10 -1.59 7.27 -84.74 -0.62 -2.20 16 15 C 0.07 1.01 9.80 -38.52 -0.38 0.64 16 16 C 0.13 1.89 3.50 -65.78 -0.23 1.66 16 17 H 0.11 1.50 8.06 -51.93 -0.42 1.09 16 18 C -0.19 -3.10 5.86 -24.90 -0.15 -3.24 16 19 C 0.16 3.29 4.38 -3.06 -0.01 3.28 16 20 N -0.59 -13.09 3.04 -204.18 -0.62 -13.71 16 21 C -0.24 -6.07 10.28 -15.06 -0.15 -6.22 16 22 H 0.08 2.05 7.83 -52.48 -0.41 1.64 16 23 C 0.00 0.13 5.49 -17.43 -0.10 0.03 16 24 N -0.91 -24.34 10.31 55.49 0.57 -23.77 16 25 Si 0.91 20.72 29.55 -169.99 -5.02 15.70 16 26 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 27 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 28 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 29 C 0.09 1.59 5.78 -2.53 -0.01 1.58 16 30 H 0.06 0.78 8.09 -51.93 -0.42 0.36 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.74 7.99 -51.93 -0.41 0.33 16 34 H 0.08 0.67 8.11 -51.93 -0.42 0.25 16 35 H 0.27 4.92 0.08 -111.87 -0.01 4.91 16 36 H 0.15 1.98 8.05 -52.49 -0.42 1.56 16 37 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.08 1.34 3.95 -82.30 -0.33 1.01 16 39 H 0.06 1.42 7.38 -51.93 -0.38 1.04 16 40 H 0.07 1.68 7.07 -51.93 -0.37 1.32 16 41 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 42 H 0.04 0.71 4.14 -51.93 -0.21 0.50 16 43 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 341.43 15.07 5.15 5.15 Total: -1.00 -29.38 341.43 -8.64 -38.02 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -6.27 Total: 7.20 kcal Atomic # 6 Polarization: 10.65 SS G_CDS: -3.31 Total: 7.34 kcal Atomic # 7 Polarization: -65.44 SS G_CDS: 0.73 Total: -64.71 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: 0.09 Total: -8.69 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.38 -8.64 -38.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033854739.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 266.062 kcal (2) G-P(sol) polarization free energy of solvation -29.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 236.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 228.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds