Wall clock time and date at job start Tue Mar 31 2020 05:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46499 * 109.46666 * 2 1 4 4 C 1.34778 * 119.99759 * 264.40156 * 3 2 1 5 5 O 1.21570 * 120.00052 * 43.35413 * 4 3 2 6 6 C 1.47723 * 120.00120 * 223.34893 * 4 3 2 7 7 C 1.40122 * 120.35002 * 323.58284 * 6 4 3 8 8 N 1.31262 * 121.14953 * 179.97438 * 7 6 4 9 9 C 1.32716 * 121.79930 * 0.02562 * 8 7 6 10 10 N 1.37112 * 133.40383 * 180.02562 * 9 8 7 11 11 H 0.97000 * 126.59409 * 0.02562 * 10 9 8 12 12 N 1.40192 * 106.82014 * 179.97438 * 10 9 8 13 13 N 1.28671 * 109.50995 * 359.97438 * 12 10 9 14 14 C 1.35328 * 109.99878 * 0.02562 * 13 12 10 15 15 C 1.39425 * 120.35386 * 143.30335 * 6 4 3 16 16 C 1.46499 * 119.99900 * 84.68079 * 3 2 1 17 17 H 1.08998 * 110.88955 * 339.25188 * 16 3 2 18 18 C 1.55154 * 111.00402 * 103.14000 * 16 3 2 19 19 C 1.54324 * 102.94563 * 153.57344 * 18 16 3 20 20 N 1.47025 * 107.26819 * 337.80495 * 19 18 16 21 21 C 1.36938 * 125.64561 * 178.98390 * 20 19 18 22 22 H 1.08004 * 120.00178 * 179.97438 * 21 20 19 23 23 C 1.38813 * 120.00309 * 359.97438 * 21 20 19 24 24 N 1.31620 * 119.99751 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 120.00197 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47207 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47581 * 119.99738 * 25 23 21 28 28 H 1.48497 * 109.47126 * 239.99946 * 25 23 21 29 29 C 1.47423 * 108.70532 * 358.94160 * 20 19 18 30 30 H 1.08995 * 109.46847 * 60.00214 * 1 2 3 31 31 H 1.09004 * 109.46705 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.46810 * 299.99884 * 1 2 3 33 33 H 1.08994 * 109.46810 * 240.00115 * 2 1 3 34 34 H 1.08995 * 109.46847 * 119.99786 * 2 1 3 35 35 H 1.07998 * 119.42452 * 359.97438 * 7 6 4 36 36 H 1.07999 * 120.95160 * 359.97438 * 15 6 4 37 37 H 1.09002 * 110.71783 * 271.93422 * 18 16 3 38 38 H 1.09000 * 110.72219 * 35.20754 * 18 16 3 39 39 H 1.09005 * 109.88408 * 97.22098 * 19 18 16 40 40 H 1.08995 * 109.88619 * 218.38655 * 19 18 16 41 41 H 0.97001 * 119.99899 * 179.97438 * 24 23 21 42 42 H 1.09006 * 110.36487 * 265.29045 * 29 20 19 43 43 H 1.08994 * 110.36911 * 142.96508 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3502 1.9786 -1.1617 5 8 1.6360 1.8502 -2.1370 6 6 3.5819 2.7895 -1.2498 7 6 3.9936 3.5720 -0.1628 8 7 5.0855 4.2980 -0.2237 9 6 5.8467 4.3263 -1.3105 10 7 7.0081 4.9811 -1.6305 11 1 7.5070 5.5860 -1.0595 12 7 7.3365 4.6076 -2.9412 13 7 6.4501 3.7898 -3.3899 14 6 5.5046 3.5692 -2.4472 15 6 4.3501 2.7798 -2.4132 16 6 2.1515 2.1110 1.2633 17 1 1.5317 1.6615 2.0390 18 6 3.6357 2.1838 1.7097 19 6 3.6767 3.4671 2.5658 20 7 2.5363 4.3006 2.1577 21 6 2.2053 5.5172 2.6922 22 1 1.3444 6.0537 2.3215 23 6 2.9762 6.0608 3.7106 24 7 4.0250 5.4067 4.1629 25 14 2.5242 7.7199 4.4403 26 1 1.3114 8.2447 3.7629 27 1 2.2529 7.5650 5.8920 28 1 3.6493 8.6693 4.2455 29 6 1.8089 3.6103 1.0771 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.4023 3.5779 0.7409 36 1 4.0603 2.1827 -3.2652 37 1 3.9015 1.3124 2.3081 38 1 4.2942 2.2753 0.8459 39 1 3.5897 3.2113 3.6218 40 1 4.6094 4.0021 2.3875 41 1 4.5639 5.7867 4.8743 42 1 2.1536 3.9603 0.1040 43 1 0.7356 3.7698 1.1802 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033854739.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:10 Heat of formation + Delta-G solvation = 208.040906 kcal Electronic energy + Delta-G solvation = -29722.489893 eV Core-core repulsion = 25809.691859 eV Total energy + Delta-G solvation = -3912.798033 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.78012 -42.59897 -39.88808 -39.03002 -36.59068 -35.14867 -34.48155 -32.93918 -32.28693 -31.18796 -30.90662 -28.89450 -26.74998 -26.28946 -25.49134 -23.89135 -23.72477 -22.78706 -22.04986 -20.97118 -19.79842 -19.27922 -18.85361 -18.45772 -17.57018 -17.29340 -16.91260 -16.80195 -16.27807 -15.98703 -15.49902 -15.15133 -14.97427 -14.74239 -14.41915 -14.24617 -13.77406 -13.76070 -13.56360 -13.47497 -13.36566 -12.97537 -12.93419 -12.88814 -12.67345 -12.57219 -12.43238 -12.14048 -12.00401 -11.89898 -11.74694 -11.36675 -11.32244 -10.73773 -10.50597 -10.33396 -10.05485 -9.53545 -8.95072 -7.84685 -5.22488 -0.91450 -0.50173 0.90359 0.92800 1.23026 1.48928 1.51038 1.59245 1.78767 2.37369 2.48304 2.69627 3.09230 3.15582 3.27468 3.33875 3.48188 3.51708 3.67894 3.74768 3.79173 4.07137 4.23176 4.30963 4.37387 4.42227 4.47410 4.49327 4.65006 4.71968 4.79492 4.85863 4.98906 5.02572 5.10693 5.22340 5.47946 5.48824 5.60089 5.65764 5.72809 5.79324 6.15084 6.22799 6.44898 6.64642 6.79075 7.07087 7.69687 8.27189 9.23956 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.008952 B = 0.005996 C = 0.003927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3127.156097 B = 4668.287293 C = 7128.736465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.119 3.881 3 N -0.628 5.628 4 C 0.604 3.396 5 O -0.524 6.524 6 C -0.238 4.238 7 C 0.166 3.834 8 N -0.512 5.512 9 C 0.285 3.715 10 N -0.473 5.473 11 H 0.464 0.536 12 N 0.007 4.993 13 N -0.202 5.202 14 C -0.101 4.101 15 C 0.078 3.922 16 C 0.146 3.854 17 H 0.137 0.863 18 C -0.178 4.178 19 C 0.169 3.831 20 N -0.605 5.605 21 C -0.246 4.246 22 H 0.083 0.917 23 C -0.045 4.045 24 N -0.936 5.936 25 Si 0.968 3.032 26 H -0.269 1.269 27 H -0.289 1.289 28 H -0.297 1.297 29 C 0.083 3.917 30 H 0.041 0.959 31 H 0.085 0.915 32 H 0.057 0.943 33 H 0.081 0.919 34 H 0.108 0.892 35 H 0.257 0.743 36 H 0.179 0.821 37 H 0.106 0.894 38 H 0.079 0.921 39 H 0.035 0.965 40 H 0.035 0.965 41 H 0.249 0.751 42 H 0.030 0.970 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.698 -11.332 -7.249 13.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.001 4.001 3 N -0.362 5.362 4 C 0.392 3.608 5 O -0.399 6.399 6 C -0.248 4.248 7 C -0.004 4.004 8 N -0.227 5.227 9 C 0.040 3.960 10 N -0.200 5.200 11 H 0.315 0.685 12 N 0.024 4.976 13 N -0.083 5.083 14 C -0.226 4.226 15 C 0.048 3.952 16 C 0.042 3.958 17 H 0.154 0.846 18 C -0.218 4.218 19 C 0.045 3.955 20 N -0.332 5.332 21 C -0.375 4.375 22 H 0.100 0.900 23 C -0.240 4.240 24 N -0.583 5.583 25 Si 0.797 3.203 26 H -0.194 1.194 27 H -0.216 1.216 28 H -0.224 1.224 29 C -0.042 4.042 30 H 0.060 0.940 31 H 0.103 0.897 32 H 0.076 0.924 33 H 0.100 0.900 34 H 0.126 0.874 35 H 0.271 0.729 36 H 0.196 0.804 37 H 0.124 0.876 38 H 0.097 0.903 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.058 0.942 42 H 0.047 0.953 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.300 -10.604 -8.168 13.389 hybrid contribution -0.253 1.304 1.043 1.689 sum 0.047 -9.300 -7.125 11.716 Atomic orbital electron populations 1.22176 0.95630 1.02979 1.01837 1.21717 0.94956 0.79044 1.04389 1.47421 1.68857 1.15548 1.04407 1.17637 0.82736 0.77344 0.83058 1.90745 1.50387 1.59293 1.39478 1.21232 1.00574 1.06290 0.96675 1.27223 0.89615 0.83399 1.00147 1.67206 1.07258 1.24163 1.24048 1.20173 0.89831 0.93294 0.92725 1.47497 1.19214 1.39462 1.13864 0.68533 1.81579 1.16728 1.09736 0.89566 1.74770 1.00185 1.09224 1.24164 1.20445 1.01223 1.07692 0.93284 1.21064 0.87001 0.90693 0.96466 1.22347 0.96544 0.90969 0.85985 0.84563 1.24220 0.96899 1.00241 1.00435 1.21210 0.90524 0.87704 0.96058 1.44759 1.29643 1.19583 1.39241 1.19335 1.09749 0.94292 1.14083 0.89957 1.25465 0.97515 1.01582 0.99447 1.70111 1.18778 1.38992 1.30446 0.85173 0.77313 0.79853 0.77913 1.19388 1.21623 1.22441 1.22585 0.97842 0.91801 0.91982 0.93975 0.89672 0.92374 0.90049 0.87427 0.72942 0.80407 0.87554 0.90343 0.94719 0.94711 0.94169 0.95317 0.91867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.87 10.23 71.98 0.74 -2.14 16 2 C 0.12 2.08 6.13 86.38 0.53 2.61 16 3 N -0.63 -15.45 2.55 -793.64 -2.02 -17.47 16 4 C 0.60 17.77 5.65 86.75 0.49 18.26 16 5 O -0.52 -17.22 17.34 -3.94 -0.07 -17.29 16 6 C -0.24 -7.42 5.14 -20.03 -0.10 -7.52 16 7 C 0.17 5.92 4.82 85.24 0.41 6.33 16 8 N -0.51 -19.49 10.15 -237.95 -2.41 -21.90 16 9 C 0.29 9.63 8.49 134.01 1.14 10.76 16 10 N -0.47 -13.39 7.52 -55.37 -0.42 -13.81 16 11 H 0.46 10.39 8.96 -213.26 -1.91 8.48 16 12 N 0.01 0.20 13.82 37.02 0.51 0.71 16 13 N -0.20 -6.22 12.40 -52.14 -0.65 -6.87 16 14 C -0.10 -3.17 7.27 39.63 0.29 -2.89 16 15 C 0.08 2.24 9.80 22.96 0.22 2.46 16 16 C 0.15 4.03 3.50 46.39 0.16 4.19 16 17 H 0.14 3.19 8.06 -2.39 -0.02 3.17 16 18 C -0.18 -5.44 5.86 31.78 0.19 -5.26 16 19 C 0.17 7.19 4.38 86.73 0.38 7.57 16 20 N -0.60 -27.14 3.04 -799.89 -2.43 -29.57 16 21 C -0.25 -12.58 10.28 84.03 0.86 -11.72 16 22 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 23 C -0.05 -2.39 5.49 84.86 0.47 -1.92 16 24 N -0.94 -51.48 10.31 21.65 0.22 -51.26 16 25 Si 0.97 43.26 29.55 68.60 2.03 45.29 16 26 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 27 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 28 H -0.30 -13.54 7.11 99.48 0.71 -12.84 16 29 C 0.08 3.01 5.78 86.86 0.50 3.51 16 30 H 0.04 0.92 8.09 -2.39 -0.02 0.90 16 31 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 32 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.08 1.35 7.99 -2.39 -0.02 1.33 16 34 H 0.11 1.31 8.11 -2.39 -0.02 1.29 16 35 H 0.26 9.47 0.08 -58.75 0.00 9.46 16 36 H 0.18 4.16 8.05 -2.91 -0.02 4.14 16 37 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 38 H 0.08 2.51 3.95 -30.92 -0.12 2.39 16 39 H 0.03 1.64 7.38 -2.38 -0.02 1.62 16 40 H 0.03 1.72 7.07 -2.39 -0.02 1.70 16 41 H 0.25 13.44 8.31 -92.71 -0.77 12.67 16 42 H 0.03 1.13 4.14 -2.38 -0.01 1.12 16 43 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -64.59 341.43 0.10 -64.49 By element: Atomic # 1 Polarization: 24.37 SS G_CDS: -0.93 Total: 23.44 kcal Atomic # 6 Polarization: 17.98 SS G_CDS: 6.28 Total: 24.25 kcal Atomic # 7 Polarization: -132.98 SS G_CDS: -7.20 Total: -140.17 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: -0.07 Total: -17.29 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -64.59 0.10 -64.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033854739.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 272.526 kcal (2) G-P(sol) polarization free energy of solvation -64.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 207.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 208.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds