Wall clock time and date at job start Tue Mar 31 2020 05:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46495 * 109.47493 * 2 1 4 4 C 1.34772 * 120.00116 * 260.18230 * 3 2 1 5 5 O 1.21575 * 120.00284 * 173.52506 * 4 3 2 6 6 C 1.47692 * 119.99920 * 353.51311 * 4 3 2 7 7 C 1.41595 * 120.03184 * 29.91214 * 6 4 3 8 8 C 1.35776 * 119.55100 * 179.73353 * 7 6 4 9 9 C 1.40861 * 119.38847 * 0.50964 * 8 7 6 10 10 N 1.32486 * 133.41770 * 179.75588 * 9 8 7 11 11 N 1.28530 * 110.24309 * 180.02562 * 10 9 8 12 12 N 1.28987 * 110.84671 * 359.97438 * 11 10 9 13 13 N 1.36932 * 119.93253 * 359.75727 * 9 8 7 14 14 C 1.35499 * 120.84153 * 359.97438 * 13 9 8 15 15 C 1.46502 * 119.99767 * 80.17414 * 3 2 1 16 16 H 1.08997 * 110.89038 * 11.60174 * 15 3 2 17 17 C 1.55159 * 111.00552 * 247.67542 * 15 3 2 18 18 C 1.54315 * 102.94547 * 277.43031 * 17 15 3 19 19 N 1.47017 * 107.27381 * 337.80528 * 18 17 15 20 20 C 1.36941 * 125.65227 * 178.90165 * 19 18 17 21 21 H 1.07994 * 120.00112 * 175.36802 * 20 19 18 22 22 C 1.38809 * 119.99771 * 355.36840 * 20 19 18 23 23 N 1.31619 * 120.00138 * 5.45454 * 22 20 19 24 24 Si 1.86798 * 119.99973 * 185.45429 * 22 20 19 25 25 H 1.48499 * 109.47372 * 94.99838 * 24 22 20 26 26 H 1.48504 * 109.47304 * 215.00044 * 24 22 20 27 27 H 1.48504 * 109.47348 * 334.99851 * 24 22 20 28 28 C 1.47431 * 108.70325 * 358.94197 * 19 18 17 29 29 H 1.08996 * 109.47474 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46981 * 299.99995 * 1 2 3 31 31 H 1.09001 * 109.47107 * 59.99876 * 1 2 3 32 32 H 1.08996 * 109.47228 * 240.00031 * 2 1 3 33 33 H 1.09001 * 109.47107 * 120.00124 * 2 1 3 34 34 H 1.08001 * 120.22464 * 359.96376 * 7 6 4 35 35 H 1.07997 * 120.30861 * 180.26690 * 8 7 6 36 36 H 1.08002 * 119.82134 * 180.02562 * 14 13 9 37 37 H 1.09001 * 110.71819 * 159.06317 * 17 15 3 38 38 H 1.09002 * 110.72159 * 35.79740 * 17 15 3 39 39 H 1.09002 * 109.88428 * 218.38865 * 18 17 15 40 40 H 1.09006 * 109.88292 * 97.22630 * 18 17 15 41 41 H 0.97000 * 119.99874 * 180.02562 * 23 22 20 42 42 H 1.08995 * 110.36544 * 142.96379 * 28 19 18 43 43 H 1.08999 * 110.36097 * 265.18191 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.4307 1.9501 -1.1501 5 8 2.7243 3.1296 -1.1736 6 6 2.5261 1.1407 -2.3817 7 6 1.6575 0.0392 -2.5749 8 6 1.7500 -0.6950 -3.7132 9 6 2.7172 -0.3542 -4.6789 10 7 3.0483 -0.8647 -5.8558 11 7 4.0146 -0.1950 -6.3751 12 7 4.3726 0.7712 -5.5991 13 7 3.5492 0.7124 -4.4658 14 6 3.4561 1.4507 -3.3335 15 6 2.0585 2.1439 1.2502 16 1 1.8911 1.4929 2.1082 17 6 1.0321 3.3072 1.2251 18 6 1.7838 4.4150 0.4576 19 7 3.2209 4.1262 0.5705 20 6 4.2296 4.8620 0.0080 21 1 5.2598 4.6101 0.2113 22 6 3.9277 5.9317 -0.8235 23 7 2.6764 6.3060 -0.9863 24 14 5.2973 6.8400 -1.7114 25 1 5.4572 6.2812 -3.0779 26 1 4.9564 8.2824 -1.8033 27 1 6.5674 6.6786 -0.9590 28 6 3.3963 2.9125 1.3890 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 0.9238 -0.2129 -1.8235 35 1 1.0907 -1.5349 -3.8751 36 1 4.1204 2.2887 -3.1826 37 1 0.7938 3.6331 2.2375 38 1 0.1286 3.0130 0.6909 39 1 1.5651 5.3867 0.9004 40 1 1.4854 4.4075 -0.5909 41 1 2.4654 7.0533 -1.5676 42 1 4.2206 2.3118 1.0048 43 1 3.5757 3.1800 2.4303 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033900387.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:14 Heat of formation + Delta-G solvation = 231.945499 kcal Electronic energy + Delta-G solvation = -29816.954504 eV Core-core repulsion = 25905.193052 eV Total energy + Delta-G solvation = -3911.761452 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 2.28 seconds Orbital eigenvalues (eV) -43.39694 -40.57895 -38.51009 -36.20466 -35.98968 -34.02949 -32.60467 -31.72107 -30.74535 -30.14305 -29.10834 -27.35254 -25.56537 -24.60862 -24.28326 -23.26009 -22.77988 -21.49217 -20.05266 -19.44160 -18.36688 -17.56855 -16.97459 -16.85650 -16.63625 -15.93941 -15.31185 -15.05603 -14.85143 -14.55036 -14.45216 -13.78325 -13.72957 -13.28972 -13.02324 -12.82746 -12.69530 -12.45956 -12.08357 -11.95612 -11.85237 -11.77118 -11.71977 -11.68806 -11.17780 -11.07753 -10.87533 -10.85966 -10.80083 -10.28787 -10.07317 -9.87807 -9.84617 -9.60986 -8.81188 -8.78658 -8.56864 -8.04051 -6.46080 -5.62066 -2.81404 0.17589 0.37856 1.64194 2.02218 2.75123 3.17781 3.43916 3.49139 3.51510 3.54631 3.63004 4.04029 4.39743 4.43337 4.56770 4.69879 4.79057 4.92815 4.98825 5.18022 5.25056 5.31147 5.40429 5.47322 5.53806 5.54933 5.55766 5.60070 5.67658 5.73491 5.87465 5.89997 6.03617 6.11837 6.28529 6.36367 6.45821 6.48949 6.61378 7.07969 7.60112 7.74701 7.77141 7.97306 8.33028 8.35845 8.83275 9.31012 9.92614 10.56694 11.49892 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.010648 B = 0.005646 C = 0.003935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2628.873933 B = 4957.844164 C = 7113.538119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.078 3.922 3 N -0.604 5.604 4 C 0.499 3.501 5 O -0.379 6.379 6 C -0.131 4.131 7 C -0.063 4.063 8 C -0.109 4.109 9 C 0.241 3.759 10 N -0.332 5.332 11 N -0.016 5.016 12 N -0.109 5.109 13 N -0.296 5.296 14 C 0.155 3.845 15 C 0.138 3.862 16 H 0.086 0.914 17 C -0.160 4.160 18 C 0.188 3.812 19 N -0.560 5.560 20 C -0.203 4.203 21 H 0.070 0.930 22 C 0.001 3.999 23 N -0.908 5.908 24 Si 0.897 3.103 25 H -0.291 1.291 26 H -0.293 1.293 27 H -0.283 1.283 28 C 0.124 3.876 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.097 0.903 33 H 0.074 0.926 34 H 0.185 0.815 35 H 0.167 0.833 36 H 0.193 0.807 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.029 0.971 40 H 0.069 0.931 41 H 0.248 0.752 42 H 0.038 0.962 43 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.942 -16.164 3.874 18.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.045 4.045 3 N -0.342 5.342 4 C 0.281 3.719 5 O -0.243 6.243 6 C -0.142 4.142 7 C -0.089 4.089 8 C -0.132 4.132 9 C -0.013 4.013 10 N -0.192 5.192 11 N -0.009 5.009 12 N -0.093 5.093 13 N -0.074 5.074 14 C 0.025 3.975 15 C 0.034 3.966 16 H 0.104 0.896 17 C -0.199 4.199 18 C 0.064 3.936 19 N -0.284 5.284 20 C -0.332 4.332 21 H 0.088 0.912 22 C -0.196 4.196 23 N -0.555 5.555 24 Si 0.729 3.271 25 H -0.219 1.219 26 H -0.220 1.220 27 H -0.209 1.209 28 C -0.004 4.004 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.114 0.886 33 H 0.092 0.908 34 H 0.202 0.798 35 H 0.184 0.816 36 H 0.210 0.790 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.047 0.953 40 H 0.087 0.913 41 H 0.058 0.942 42 H 0.056 0.944 43 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -5.830 -15.296 2.304 16.531 hybrid contribution 0.291 0.595 0.217 0.697 sum -5.539 -14.701 2.521 15.911 Atomic orbital electron populations 1.22365 0.96202 1.02213 1.03350 1.22286 0.94200 0.84249 1.03814 1.47504 1.66673 1.12810 1.07229 1.17813 0.83231 0.88339 0.82472 1.91646 1.40199 1.11156 1.81308 1.20122 0.97673 0.98381 0.97986 1.22574 0.98159 0.91594 0.96525 1.20287 0.98095 1.03754 0.91067 1.23057 0.94714 0.88059 0.95513 1.75085 1.12851 1.25211 1.06097 1.77825 1.04585 0.98873 1.19582 1.82874 1.15263 1.20270 0.90872 1.48730 1.23038 1.20573 1.15026 1.21752 0.98988 0.95471 0.81307 1.22265 0.97824 0.92288 0.84231 0.89590 1.23393 0.97988 0.97744 1.00785 1.21228 0.82248 0.91910 0.98255 1.44320 1.02654 1.25334 1.56085 1.18861 0.86306 1.07060 1.20929 0.91187 1.24617 0.95849 0.99048 1.00076 1.69945 1.15785 1.28758 1.41007 0.86324 0.81391 0.79118 0.80314 1.21872 1.21992 1.20918 1.21872 0.93947 0.89449 0.95085 0.91457 0.91286 0.91847 0.88574 0.90771 0.79800 0.81575 0.79009 0.91982 0.92169 0.95341 0.91291 0.94179 0.94412 0.95562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 47. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.22 9.12 37.16 0.34 -0.88 16 2 C 0.08 0.63 5.56 -4.05 -0.02 0.61 16 3 N -0.60 -7.82 2.57 -164.83 -0.42 -8.25 16 4 C 0.50 8.04 6.93 -12.40 -0.09 7.95 16 5 O -0.38 -8.17 8.46 5.30 0.04 -8.12 16 6 C -0.13 -1.77 5.55 -105.34 -0.58 -2.35 16 7 C -0.06 -0.61 7.48 -39.18 -0.29 -0.90 16 8 C -0.11 -1.06 10.09 -39.47 -0.40 -1.46 16 9 C 0.24 3.40 8.02 -156.27 -1.25 2.15 16 10 N -0.33 -5.34 12.26 31.10 0.38 -4.95 16 11 N -0.02 -0.27 13.35 60.35 0.81 0.53 16 12 N -0.11 -1.93 13.99 60.35 0.84 -1.08 16 13 N -0.30 -4.66 3.92 -12.06 -0.05 -4.71 16 14 C 0.16 2.35 10.75 -16.51 -0.18 2.17 16 15 C 0.14 1.98 3.76 -65.78 -0.25 1.73 16 16 H 0.09 0.96 7.97 -51.93 -0.41 0.55 16 17 C -0.16 -2.63 6.54 -24.90 -0.16 -2.79 16 18 C 0.19 4.27 4.21 -3.07 -0.01 4.26 16 19 N -0.56 -13.17 1.77 -170.07 -0.30 -13.48 16 20 C -0.20 -5.42 9.00 -15.06 -0.14 -5.55 16 21 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 22 C 0.00 0.02 5.35 -17.43 -0.09 -0.07 16 23 N -0.91 -26.16 10.34 55.49 0.57 -25.58 16 24 Si 0.90 22.22 29.56 -169.99 -5.02 17.19 16 25 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 26 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 27 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 28 C 0.12 2.29 6.26 -2.52 -0.02 2.28 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.47 7.14 -51.93 -0.37 0.10 16 32 H 0.10 0.69 3.88 -53.11 -0.21 0.49 16 33 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 34 H 0.19 1.27 2.71 -52.49 -0.14 1.12 16 35 H 0.17 1.02 8.06 -52.49 -0.42 0.60 16 36 H 0.19 3.13 7.86 -52.49 -0.41 2.71 16 37 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.03 0.74 7.62 -51.93 -0.40 0.35 16 40 H 0.07 1.79 5.39 -51.93 -0.28 1.51 16 41 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 42 H 0.04 0.71 8.13 -51.93 -0.42 0.29 16 43 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 339.88 15.07 5.12 5.12 Total: -1.00 -33.19 339.88 -6.31 -39.50 By element: Atomic # 1 Polarization: 1.82 SS G_CDS: -5.15 Total: -3.32 kcal Atomic # 6 Polarization: 10.29 SS G_CDS: -3.14 Total: 7.15 kcal Atomic # 7 Polarization: -59.35 SS G_CDS: 1.83 Total: -57.52 kcal Atomic # 8 Polarization: -8.17 SS G_CDS: 0.04 Total: -8.12 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.19 -6.31 -39.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033900387.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 271.450 kcal (2) G-P(sol) polarization free energy of solvation -33.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 238.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 231.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.28 seconds