Wall clock time and date at job start Tue Mar 31 2020 05:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46500 * 109.46859 * 2 1 4 4 C 1.34774 * 119.99827 * 264.22465 * 3 2 1 5 5 O 1.21577 * 120.00455 * 52.14034 * 4 3 2 6 6 C 1.47700 * 120.00069 * 232.14332 * 4 3 2 7 7 C 1.41596 * 120.02900 * 315.94306 * 6 4 3 8 8 C 1.35784 * 119.54596 * 179.72672 * 7 6 4 9 9 C 1.40860 * 119.39000 * 0.55281 * 8 7 6 10 10 N 1.32483 * 133.41743 * 179.73847 * 9 8 7 11 11 N 1.28526 * 110.24550 * 179.97438 * 10 9 8 12 12 N 1.28985 * 110.84320 * 0.02562 * 11 10 9 13 13 N 1.36932 * 119.93042 * 359.69315 * 9 8 7 14 14 C 1.35496 * 120.84628 * 0.03271 * 13 9 8 15 15 C 1.46497 * 120.00432 * 84.49643 * 3 2 1 16 16 H 1.09006 * 110.88223 * 335.10116 * 15 3 2 17 17 C 1.55155 * 111.00426 * 98.97568 * 15 3 2 18 18 C 1.54320 * 102.94260 * 153.57770 * 17 15 3 19 19 N 1.47022 * 107.27504 * 337.81168 * 18 17 15 20 20 C 1.36935 * 125.65442 * 178.98296 * 19 18 17 21 21 H 1.07995 * 119.99982 * 179.97438 * 20 19 18 22 22 C 1.38818 * 119.99364 * 359.97438 * 20 19 18 23 23 N 1.31610 * 120.00095 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99566 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47003 * 59.99793 * 24 22 20 26 26 H 1.48497 * 109.47198 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.47375 * 299.99768 * 24 22 20 28 28 C 1.47432 * 108.69880 * 358.93873 * 19 18 17 29 29 H 1.08994 * 109.47774 * 60.00047 * 1 2 3 30 30 H 1.09005 * 109.47097 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47174 * 299.99820 * 1 2 3 32 32 H 1.08996 * 109.46592 * 240.00121 * 2 1 3 33 33 H 1.08992 * 109.47056 * 119.99763 * 2 1 3 34 34 H 1.07997 * 120.22636 * 359.97438 * 7 6 4 35 35 H 1.08000 * 120.29947 * 180.24509 * 8 7 6 36 36 H 1.07999 * 119.82091 * 179.97438 * 14 13 9 37 37 H 1.08999 * 110.72581 * 271.94592 * 17 15 3 38 38 H 1.09005 * 110.71621 * 35.21620 * 17 15 3 39 39 H 1.09005 * 109.88022 * 97.22783 * 18 17 15 40 40 H 1.09004 * 109.88446 * 218.38977 * 18 17 15 41 41 H 0.97006 * 120.00018 * 180.02562 * 23 22 20 42 42 H 1.09000 * 110.36577 * 265.28882 * 28 19 18 43 43 H 1.09004 * 110.36584 * 142.96907 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3536 1.9774 -1.1613 5 8 1.5693 1.9835 -2.0902 6 6 3.6741 2.6233 -1.3055 7 6 4.1808 3.4400 -0.2657 8 6 5.3983 4.0245 -0.4063 9 6 6.1319 3.8174 -1.5908 10 7 7.3122 4.2422 -2.0169 11 7 7.5567 3.7744 -3.1888 12 7 6.5837 3.0341 -3.5996 13 7 5.6174 3.0273 -2.5838 14 6 4.4053 2.4378 -2.4447 15 6 2.1478 2.1125 1.2628 16 1 1.4713 1.7092 2.0164 17 6 3.6150 2.0963 1.7669 18 6 3.7030 3.3821 2.6158 19 7 2.6340 4.2815 2.1579 20 6 2.3593 5.5210 2.6712 21 1 1.5488 6.1068 2.2634 22 6 3.1226 6.0243 3.7157 23 7 4.1099 5.3101 4.2130 24 14 2.7483 7.7154 4.4155 25 1 1.3602 7.7368 4.9426 26 1 3.6996 8.0177 5.5150 27 1 2.8873 8.7357 3.3455 28 6 1.9073 3.6284 1.0538 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 3.6046 3.5936 0.6348 35 1 5.7982 4.6465 0.3808 36 1 4.0152 1.8182 -3.2386 37 1 3.8023 1.2153 2.3808 38 1 4.3111 2.1389 0.9291 39 1 3.5592 3.1414 3.6691 40 1 4.6738 3.8562 2.4710 41 1 4.6430 5.6616 4.9431 42 1 2.3108 3.9476 0.0929 43 1 0.8429 3.8555 1.1135 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033900389.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:19 Heat of formation + Delta-G solvation = 222.117351 kcal Electronic energy + Delta-G solvation = -29590.951318 eV Core-core repulsion = 25678.763685 eV Total energy + Delta-G solvation = -3912.187633 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.40914 -41.33469 -38.48584 -38.07937 -35.51034 -34.05745 -32.89395 -32.03020 -30.82877 -30.36128 -29.41611 -27.51079 -25.88451 -24.78028 -24.48177 -23.25697 -22.72571 -21.63506 -20.45037 -20.08243 -18.22465 -17.68292 -17.54751 -17.13988 -16.84216 -16.37533 -15.48923 -15.10056 -14.89900 -14.79122 -14.47885 -13.94120 -13.88190 -13.60332 -13.38011 -12.88256 -12.79250 -12.62254 -12.60466 -12.22559 -12.16568 -12.06039 -11.49353 -11.43706 -11.31313 -11.20097 -11.12837 -11.04742 -10.86462 -10.62114 -10.32392 -10.29136 -10.09821 -9.97756 -9.73157 -8.87894 -8.60239 -8.47204 -7.22533 -5.98784 -3.36507 0.11448 0.52315 1.53415 1.85610 2.29523 2.80577 3.11726 3.28620 3.34332 3.34958 3.69545 4.01353 4.22728 4.28993 4.37733 4.77172 4.82441 4.87183 4.97106 5.03831 5.14458 5.19764 5.26745 5.30447 5.34556 5.37461 5.52734 5.57254 5.71986 5.75584 5.85254 5.90906 5.97645 6.10175 6.14710 6.17826 6.22074 6.26200 6.44046 6.70687 7.16217 7.21052 7.25672 7.54256 7.64384 7.90901 8.36872 8.90257 9.48974 10.06405 11.11653 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.009375 B = 0.005510 C = 0.003798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2985.975012 B = 5080.025948 C = 7370.745875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.130 3.870 3 N -0.648 5.648 4 C 0.610 3.390 5 O -0.487 6.487 6 C -0.157 4.157 7 C -0.066 4.066 8 C -0.106 4.106 9 C 0.260 3.740 10 N -0.329 5.329 11 N -0.010 5.010 12 N -0.121 5.121 13 N -0.308 5.308 14 C 0.152 3.848 15 C 0.134 3.866 16 H 0.107 0.893 17 C -0.190 4.190 18 C 0.162 3.838 19 N -0.593 5.593 20 C -0.245 4.245 21 H 0.083 0.917 22 C 0.005 3.995 23 N -0.916 5.916 24 Si 0.915 3.085 25 H -0.283 1.283 26 H -0.288 1.288 27 H -0.282 1.282 28 C 0.094 3.906 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.234 0.766 35 H 0.175 0.825 36 H 0.184 0.816 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.061 0.939 40 H 0.057 0.943 41 H 0.258 0.742 42 H 0.037 0.963 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.460 -11.260 -5.962 13.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.008 3.992 3 N -0.384 5.384 4 C 0.397 3.603 5 O -0.359 6.359 6 C -0.166 4.166 7 C -0.090 4.090 8 C -0.130 4.130 9 C 0.007 3.993 10 N -0.189 5.189 11 N -0.003 5.003 12 N -0.105 5.105 13 N -0.087 5.087 14 C 0.022 3.978 15 C 0.030 3.970 16 H 0.125 0.875 17 C -0.229 4.229 18 C 0.038 3.962 19 N -0.321 5.321 20 C -0.372 4.372 21 H 0.100 0.900 22 C -0.193 4.193 23 N -0.562 5.562 24 Si 0.744 3.256 25 H -0.209 1.209 26 H -0.214 1.214 27 H -0.208 1.208 28 C -0.033 4.033 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.249 0.751 35 H 0.192 0.808 36 H 0.201 0.799 37 H 0.092 0.908 38 H 0.098 0.902 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.054 0.946 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.524 -10.977 -7.392 13.473 hybrid contribution -0.822 0.663 0.902 1.389 sum -3.346 -10.314 -6.490 12.637 Atomic orbital electron populations 1.22242 0.95997 1.01775 1.03156 1.21353 0.94620 0.80665 1.02529 1.47228 1.70850 1.14756 1.05557 1.17510 0.84108 0.76090 0.82581 1.90785 1.49736 1.53022 1.42375 1.20242 0.98050 1.03542 0.94802 1.24162 0.95419 0.88887 1.00559 1.20506 0.94157 1.03734 0.94565 1.23271 0.91993 0.91480 0.92592 1.75188 1.12370 1.25580 1.05721 1.77810 1.16113 1.02237 1.04134 1.82754 0.95006 1.24436 1.08259 1.48678 1.14733 1.31403 1.13860 1.21396 0.81864 0.96189 0.98331 1.22478 0.97625 0.92684 0.84243 0.87488 1.24219 0.96207 1.01568 1.00915 1.21423 0.92804 0.85272 0.96729 1.44607 1.34313 1.16713 1.36429 1.19006 1.13941 0.90624 1.13626 0.89957 1.24818 0.97510 0.98796 0.98163 1.69895 1.21098 1.37058 1.28100 0.86165 0.77576 0.83213 0.78610 1.20936 1.21375 1.20832 1.22406 0.98008 0.89719 0.93120 0.91698 0.92064 0.92177 0.91028 0.90190 0.75050 0.80753 0.79881 0.90827 0.90242 0.92059 0.92501 0.93144 0.94626 0.92528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.57 10.23 37.16 0.38 -1.19 16 2 C 0.13 1.20 6.25 -4.04 -0.03 1.17 16 3 N -0.65 -7.76 2.53 -164.84 -0.42 -8.17 16 4 C 0.61 8.22 5.16 -12.40 -0.06 8.16 16 5 O -0.49 -7.47 17.57 5.30 0.09 -7.38 16 6 C -0.16 -2.11 5.24 -105.33 -0.55 -2.66 16 7 C -0.07 -0.98 4.55 -39.18 -0.18 -1.15 16 8 C -0.11 -1.63 10.09 -39.47 -0.40 -2.03 16 9 C 0.26 4.24 8.02 -156.27 -1.25 2.99 16 10 N -0.33 -5.87 12.26 31.10 0.38 -5.49 16 11 N -0.01 -0.17 13.35 60.35 0.81 0.63 16 12 N -0.12 -2.00 13.99 60.35 0.84 -1.15 16 13 N -0.31 -4.70 3.92 -12.06 -0.05 -4.75 16 14 C 0.15 1.95 10.80 -16.51 -0.18 1.77 16 15 C 0.13 1.80 3.49 -65.79 -0.23 1.57 16 16 H 0.11 1.36 8.08 -51.93 -0.42 0.94 16 17 C -0.19 -2.69 5.88 -24.90 -0.15 -2.83 16 18 C 0.16 3.10 4.42 -3.07 -0.01 3.08 16 19 N -0.59 -12.26 2.99 -176.50 -0.53 -12.79 16 20 C -0.24 -5.85 10.28 -15.06 -0.15 -6.01 16 21 H 0.08 1.93 7.83 -52.49 -0.41 1.52 16 22 C 0.00 0.12 5.49 -17.43 -0.10 0.02 16 23 N -0.92 -23.37 10.31 55.49 0.57 -22.80 16 24 Si 0.91 20.05 29.55 -169.99 -5.02 15.02 16 25 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 26 H -0.29 -6.44 7.11 56.52 0.40 -6.03 16 27 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 28 C 0.09 1.58 5.71 -2.53 -0.01 1.57 16 29 H 0.06 0.70 8.09 -51.93 -0.42 0.28 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.60 7.99 -51.93 -0.41 0.19 16 33 H 0.08 0.60 8.11 -51.93 -0.42 0.18 16 34 H 0.23 3.76 0.58 -60.82 -0.04 3.73 16 35 H 0.18 2.66 8.06 -52.49 -0.42 2.24 16 36 H 0.18 1.85 8.06 -52.49 -0.42 1.43 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.08 1.10 4.12 -55.50 -0.23 0.87 16 39 H 0.06 1.34 7.38 -51.93 -0.38 0.95 16 40 H 0.06 1.20 7.46 -51.93 -0.39 0.81 16 41 H 0.26 6.53 8.31 -40.82 -0.34 6.19 16 42 H 0.04 0.63 4.12 -51.93 -0.21 0.41 16 43 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 344.17 15.07 5.19 5.19 Total: -1.00 -27.78 344.17 -6.06 -33.85 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -5.01 Total: 3.37 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: -2.92 Total: 4.47 kcal Atomic # 7 Polarization: -56.13 SS G_CDS: 1.61 Total: -54.52 kcal Atomic # 8 Polarization: -7.47 SS G_CDS: 0.09 Total: -7.38 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -27.78 -6.06 -33.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033900389.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 255.963 kcal (2) G-P(sol) polarization free energy of solvation -27.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 228.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 222.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds