Wall clock time and date at job start Tue Mar 31 2020 04:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00060 * 2 1 4 4 H 1.48493 * 109.47322 * 239.99732 * 3 2 1 5 5 H 1.48502 * 109.47114 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47151 * 119.99784 * 3 2 1 7 7 C 1.38808 * 119.99870 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00041 * 195.66371 * 7 2 1 9 9 N 1.36937 * 120.00070 * 15.66260 * 7 2 1 10 10 C 1.44581 * 118.64433 * 206.50010 * 9 7 2 11 11 C 1.54869 * 109.59866 * 270.72503 * 10 9 7 12 12 C 1.47089 * 110.32142 * 288.73233 * 11 10 9 13 13 C 1.52571 * 114.32746 * 62.80611 * 12 11 10 14 14 C 1.50884 * 109.37639 * 274.97477 * 13 12 11 15 15 H 1.09003 * 109.36252 * 331.70114 * 14 13 12 16 16 N 1.46500 * 109.36425 * 212.08815 * 14 13 12 17 17 C 1.34782 * 119.99839 * 155.00041 * 16 14 13 18 18 O 1.21515 * 119.99865 * 359.97438 * 17 16 14 19 19 C 1.48119 * 119.99844 * 180.02562 * 17 16 14 20 20 C 1.39818 * 119.37075 * 179.73152 * 19 17 16 21 21 C 1.36971 * 119.60420 * 179.72055 * 20 19 17 22 22 C 1.39818 * 118.25245 * 0.53128 * 21 20 19 23 23 N 1.34642 * 135.00339 * 179.73200 * 22 21 20 24 24 N 1.28669 * 109.15972 * 180.02562 * 23 22 21 25 25 N 1.28763 * 111.84735 * 359.97438 * 24 23 22 26 26 H 0.96997 * 125.86556 * 179.97438 * 25 24 23 27 27 C 1.37253 * 108.27879 * 0.02562 * 25 24 23 28 28 N 1.31960 * 134.70196 * 179.97438 * 27 25 24 29 29 C 1.47600 * 118.64417 * 26.52166 * 9 7 2 30 30 H 0.97000 * 120.00069 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.45215 * 150.69026 * 10 9 7 32 32 H 1.09000 * 109.45200 * 30.76258 * 10 9 7 33 33 H 1.09001 * 109.32860 * 168.47334 * 11 10 9 34 34 H 1.08992 * 109.18742 * 48.90816 * 11 10 9 35 35 H 1.09003 * 108.51524 * 301.55024 * 12 11 10 36 36 H 1.09000 * 108.51499 * 184.05578 * 12 11 10 37 37 H 1.09002 * 109.48861 * 34.94752 * 13 12 11 38 38 H 1.08999 * 109.49259 * 154.99956 * 13 12 11 39 39 H 0.97000 * 120.00182 * 334.99769 * 16 14 13 40 40 H 1.08001 * 120.19930 * 359.97438 * 20 19 17 41 41 H 1.08003 * 120.87146 * 180.28341 * 21 20 19 42 42 H 1.09001 * 108.95052 * 258.55619 * 29 9 7 43 43 H 1.08999 * 108.95056 * 17.17965 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0601 -1.2194 0.2531 9 7 1.3637 -2.3662 -0.3191 10 6 1.8692 -3.6097 0.2178 11 6 2.9228 -4.2032 -0.7497 12 6 2.2707 -4.7081 -1.9677 13 6 1.5624 -3.6370 -2.7916 14 6 0.1711 -3.4256 -2.2476 15 1 -0.1802 -4.3480 -1.7850 16 7 -0.7293 -3.0617 -3.3445 17 6 -2.0507 -3.3064 -3.2411 18 8 -2.4951 -3.8293 -2.2382 19 6 -2.9609 -2.9390 -4.3503 20 6 -4.3286 -3.2040 -4.2315 21 6 -5.1754 -2.8610 -5.2519 22 6 -4.6301 -2.2619 -6.3915 23 7 -5.1258 -1.8065 -7.5575 24 7 -4.1632 -1.3387 -8.2717 25 7 -3.0283 -1.4409 -7.6722 26 1 -2.1715 -1.1534 -8.0246 27 6 -3.2386 -2.0276 -6.4494 28 7 -2.4627 -2.3708 -5.4387 29 6 0.1797 -2.2996 -1.1980 30 1 -0.4850 0.8400 0.0004 31 1 1.0467 -4.3152 0.3357 32 1 2.3306 -3.4253 1.1880 33 1 3.4465 -5.0213 -0.2552 34 1 3.6390 -3.4270 -1.0192 35 1 1.5396 -5.4640 -1.6809 36 1 3.0265 -5.1827 -2.5936 37 1 2.1219 -2.7034 -2.7322 38 1 1.5014 -3.9590 -3.8312 39 1 -0.3745 -2.6446 -4.1451 40 1 -4.7156 -3.6726 -3.3387 41 1 -6.2360 -3.0520 -5.1799 42 1 -0.7195 -2.3786 -0.5870 43 1 0.1734 -1.3379 -1.7111 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034238534.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:24 Heat of formation + Delta-G solvation = 118.389088 kcal Electronic energy + Delta-G solvation = -28235.196038 eV Core-core repulsion = 24318.510410 eV Total energy + Delta-G solvation = -3916.685628 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.68994 -40.26911 -38.75257 -37.53167 -34.74435 -34.40305 -33.57958 -32.17918 -31.39425 -30.77455 -29.83918 -26.31064 -25.76809 -24.40060 -24.12611 -23.13529 -22.92757 -20.96619 -20.12767 -19.32024 -19.06671 -18.70078 -17.81914 -16.91824 -16.67647 -15.90157 -15.46602 -15.35529 -14.72235 -14.64827 -14.10312 -13.90133 -13.78105 -13.49124 -13.22391 -13.09040 -12.76857 -12.69081 -12.45576 -12.12042 -12.10238 -11.99209 -11.37027 -11.16496 -11.02601 -10.73448 -10.52072 -10.34654 -10.28368 -10.16986 -9.97950 -9.81777 -9.69630 -9.56781 -9.51414 -9.38064 -8.62154 -8.40023 -6.66645 -5.78249 -3.22915 -0.18073 0.67122 1.78566 1.80000 2.69232 3.14139 3.35802 3.42233 3.42495 3.43921 3.58491 3.92293 4.06047 4.46273 4.47895 4.61112 5.06955 5.12720 5.21025 5.31224 5.43187 5.44310 5.57492 5.60845 5.68420 5.87392 5.96207 5.99530 6.15626 6.24132 6.31241 6.45286 6.56976 6.62791 6.63795 6.73123 6.84726 6.93842 7.04134 7.09795 7.35000 7.71340 7.76160 7.80564 7.82815 8.36096 8.46239 9.22490 9.89544 10.34645 11.28116 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.013111 B = 0.003395 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.129506 B = 8245.994225 C = 9196.063776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.006 3.994 3 Si 0.899 3.101 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.260 4.260 8 H 0.066 0.934 9 N -0.586 5.586 10 C 0.154 3.846 11 C -0.148 4.148 12 C -0.098 4.098 13 C -0.116 4.116 14 C 0.116 3.884 15 H 0.077 0.923 16 N -0.691 5.691 17 C 0.566 3.434 18 O -0.520 6.520 19 C 0.162 3.838 20 C -0.120 4.120 21 C -0.003 4.003 22 C -0.027 4.027 23 N -0.239 5.239 24 N 0.006 4.994 25 N -0.403 5.403 26 H 0.459 0.541 27 C 0.217 3.783 28 N -0.446 5.446 29 C 0.174 3.826 30 H 0.254 0.746 31 H 0.033 0.967 32 H 0.046 0.954 33 H 0.047 0.953 34 H 0.061 0.939 35 H 0.050 0.950 36 H 0.044 0.956 37 H 0.082 0.918 38 H 0.051 0.949 39 H 0.405 0.595 40 H 0.169 0.831 41 H 0.160 0.840 42 H 0.034 0.966 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.960 -7.434 -13.287 16.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.193 4.193 3 Si 0.729 3.271 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.390 4.390 8 H 0.084 0.916 9 N -0.308 5.308 10 C 0.026 3.974 11 C -0.188 4.188 12 C -0.136 4.136 13 C -0.154 4.154 14 C 0.011 3.989 15 H 0.095 0.905 16 N -0.341 5.341 17 C 0.349 3.651 18 O -0.395 6.395 19 C 0.007 3.993 20 C -0.144 4.144 21 C -0.034 4.034 22 C -0.155 4.155 23 N -0.116 5.116 24 N 0.023 4.977 25 N -0.134 5.134 26 H 0.307 0.693 27 C -0.027 4.027 28 N -0.163 5.163 29 C 0.048 3.952 30 H 0.064 0.936 31 H 0.051 0.949 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.100 0.900 38 H 0.070 0.930 39 H 0.240 0.760 40 H 0.186 0.814 41 H 0.177 0.823 42 H 0.052 0.948 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.288 -7.041 -13.887 16.444 hybrid contribution 0.954 1.019 0.143 1.403 sum -4.335 -6.022 -13.744 15.619 Atomic orbital electron populations 1.70072 1.05145 1.25497 1.53652 1.25044 0.95226 0.98318 1.00715 0.86427 0.78932 0.83621 0.78118 1.21125 1.21730 1.20842 1.19152 0.92420 0.84903 1.42519 0.91634 1.43514 1.32468 1.02102 1.52667 1.20748 0.94126 0.88205 0.94328 1.21506 1.00224 0.99737 0.97376 1.20211 0.98990 0.97383 0.97001 1.21280 0.95529 1.01022 0.97554 1.21930 0.87985 1.01017 0.87920 0.90494 1.46050 1.06397 1.60637 1.20976 1.17607 0.82553 0.79797 0.85158 1.90829 1.75900 1.43213 1.29511 1.21480 0.93269 0.93814 0.90741 1.21805 0.92338 0.99723 1.00541 1.20527 1.01517 0.92820 0.88500 1.20663 0.92408 1.05570 0.96827 1.75391 1.20867 1.13183 1.02196 1.78091 0.87050 1.13344 1.19218 1.44663 1.11171 1.46156 1.11453 0.69274 1.19808 0.91675 1.01326 0.89917 1.66318 1.39012 1.12000 0.98971 1.21314 0.89309 0.95024 0.89546 0.93637 0.94854 0.93512 0.93384 0.92068 0.93168 0.93675 0.89967 0.93012 0.75969 0.81373 0.82268 0.94836 0.90419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.76 11.01 55.49 0.61 -25.15 16 2 C 0.01 0.16 4.87 -17.43 -0.08 0.08 16 3 Si 0.90 21.32 29.58 -169.99 -5.03 16.29 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.26 -6.87 9.44 -15.06 -0.14 -7.01 16 8 H 0.07 1.70 7.88 -52.49 -0.41 1.29 16 9 N -0.59 -14.03 2.27 -172.09 -0.39 -14.42 16 10 C 0.15 3.13 5.66 -4.08 -0.02 3.11 16 11 C -0.15 -2.49 5.74 -28.58 -0.16 -2.66 16 12 C -0.10 -1.50 5.15 -29.79 -0.15 -1.65 16 13 C -0.12 -1.88 5.06 -28.01 -0.14 -2.02 16 14 C 0.12 2.12 2.27 -68.50 -0.16 1.97 16 15 H 0.08 1.48 6.75 -51.93 -0.35 1.12 16 16 N -0.69 -11.14 4.97 -55.22 -0.27 -11.41 16 17 C 0.57 9.29 7.77 -12.20 -0.09 9.20 16 18 O -0.52 -9.98 15.95 5.35 0.09 -9.89 16 19 C 0.16 2.19 6.74 -82.93 -0.56 1.63 16 20 C -0.12 -1.33 9.55 -39.45 -0.38 -1.71 16 21 C 0.00 -0.03 10.16 -39.45 -0.40 -0.43 16 22 C -0.03 -0.32 7.38 -84.91 -0.63 -0.95 16 23 N -0.24 -2.94 12.43 32.12 0.40 -2.54 16 24 N 0.01 0.07 13.28 60.35 0.80 0.87 16 25 N -0.40 -3.78 7.06 31.13 0.22 -3.56 16 26 H 0.46 2.62 8.96 -190.27 -1.71 0.91 16 27 C 0.22 2.57 8.56 -156.28 -1.34 1.23 16 28 N -0.45 -5.71 9.54 -8.91 -0.08 -5.80 16 29 C 0.17 4.06 4.25 -2.95 -0.01 4.05 16 30 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 31 H 0.03 0.66 8.07 -51.93 -0.42 0.24 16 32 H 0.05 0.97 7.99 -51.93 -0.41 0.55 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.05 0.75 7.36 -51.93 -0.38 0.37 16 36 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.08 1.52 7.48 -51.93 -0.39 1.14 16 38 H 0.05 0.71 7.94 -51.93 -0.41 0.30 16 39 H 0.40 5.78 7.85 -40.82 -0.32 5.46 16 40 H 0.17 1.65 7.61 -52.49 -0.40 1.25 16 41 H 0.16 1.03 8.06 -52.48 -0.42 0.60 16 42 H 0.03 0.91 8.03 -51.93 -0.42 0.49 16 43 H 0.08 2.01 6.31 -51.93 -0.33 1.69 16 LS Contribution 353.03 15.07 5.32 5.32 Total: -1.00 -31.85 353.03 -9.39 -41.24 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -6.78 Total: 4.24 kcal Atomic # 6 Polarization: 9.10 SS G_CDS: -4.27 Total: 4.83 kcal Atomic # 7 Polarization: -63.30 SS G_CDS: 1.28 Total: -62.02 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.09 Total: -9.89 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.03 Total: 16.29 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.85 -9.39 -41.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034238534.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.626 kcal (2) G-P(sol) polarization free energy of solvation -31.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds