Wall clock time and date at job start Tue Mar 31 2020 04:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00060 * 2 1 4 4 H 1.48493 * 109.47322 * 239.99732 * 3 2 1 5 5 H 1.48502 * 109.47114 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47151 * 119.99784 * 3 2 1 7 7 C 1.38808 * 119.99870 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00041 * 195.66371 * 7 2 1 9 9 N 1.36937 * 120.00070 * 15.66260 * 7 2 1 10 10 C 1.44581 * 118.64433 * 206.50010 * 9 7 2 11 11 C 1.54869 * 109.59866 * 270.72503 * 10 9 7 12 12 C 1.47089 * 110.32142 * 288.73233 * 11 10 9 13 13 C 1.52571 * 114.32746 * 62.80611 * 12 11 10 14 14 C 1.50884 * 109.37639 * 274.97477 * 13 12 11 15 15 H 1.09003 * 109.36252 * 331.70114 * 14 13 12 16 16 N 1.46500 * 109.36425 * 212.08815 * 14 13 12 17 17 C 1.34782 * 119.99839 * 155.00041 * 16 14 13 18 18 O 1.21515 * 119.99865 * 359.97438 * 17 16 14 19 19 C 1.48119 * 119.99844 * 180.02562 * 17 16 14 20 20 C 1.39818 * 119.37075 * 179.73152 * 19 17 16 21 21 C 1.36971 * 119.60420 * 179.72055 * 20 19 17 22 22 C 1.39818 * 118.25245 * 0.53128 * 21 20 19 23 23 N 1.34642 * 135.00339 * 179.73200 * 22 21 20 24 24 N 1.28669 * 109.15972 * 180.02562 * 23 22 21 25 25 N 1.28763 * 111.84735 * 359.97438 * 24 23 22 26 26 H 0.96997 * 125.86556 * 179.97438 * 25 24 23 27 27 C 1.37253 * 108.27879 * 0.02562 * 25 24 23 28 28 N 1.31960 * 134.70196 * 179.97438 * 27 25 24 29 29 C 1.47600 * 118.64417 * 26.52166 * 9 7 2 30 30 H 0.97000 * 120.00069 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.45215 * 150.69026 * 10 9 7 32 32 H 1.09000 * 109.45200 * 30.76258 * 10 9 7 33 33 H 1.09001 * 109.32860 * 168.47334 * 11 10 9 34 34 H 1.08992 * 109.18742 * 48.90816 * 11 10 9 35 35 H 1.09003 * 108.51524 * 301.55024 * 12 11 10 36 36 H 1.09000 * 108.51499 * 184.05578 * 12 11 10 37 37 H 1.09002 * 109.48861 * 34.94752 * 13 12 11 38 38 H 1.08999 * 109.49259 * 154.99956 * 13 12 11 39 39 H 0.97000 * 120.00182 * 334.99769 * 16 14 13 40 40 H 1.08001 * 120.19930 * 359.97438 * 20 19 17 41 41 H 1.08003 * 120.87146 * 180.28341 * 21 20 19 42 42 H 1.09001 * 108.95052 * 258.55619 * 29 9 7 43 43 H 1.08999 * 108.95056 * 17.17965 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0601 -1.2194 0.2531 9 7 1.3637 -2.3662 -0.3191 10 6 1.8692 -3.6097 0.2178 11 6 2.9228 -4.2032 -0.7497 12 6 2.2707 -4.7081 -1.9677 13 6 1.5624 -3.6370 -2.7916 14 6 0.1711 -3.4256 -2.2476 15 1 -0.1802 -4.3480 -1.7850 16 7 -0.7293 -3.0617 -3.3445 17 6 -2.0507 -3.3064 -3.2411 18 8 -2.4951 -3.8293 -2.2382 19 6 -2.9609 -2.9390 -4.3503 20 6 -4.3286 -3.2040 -4.2315 21 6 -5.1754 -2.8610 -5.2519 22 6 -4.6301 -2.2619 -6.3915 23 7 -5.1258 -1.8065 -7.5575 24 7 -4.1632 -1.3387 -8.2717 25 7 -3.0283 -1.4409 -7.6722 26 1 -2.1715 -1.1534 -8.0246 27 6 -3.2386 -2.0276 -6.4494 28 7 -2.4627 -2.3708 -5.4387 29 6 0.1797 -2.2996 -1.1980 30 1 -0.4850 0.8400 0.0004 31 1 1.0467 -4.3152 0.3357 32 1 2.3306 -3.4253 1.1880 33 1 3.4465 -5.0213 -0.2552 34 1 3.6390 -3.4270 -1.0192 35 1 1.5396 -5.4640 -1.6809 36 1 3.0265 -5.1827 -2.5936 37 1 2.1219 -2.7034 -2.7322 38 1 1.5014 -3.9590 -3.8312 39 1 -0.3745 -2.6446 -4.1451 40 1 -4.7156 -3.6726 -3.3387 41 1 -6.2360 -3.0520 -5.1799 42 1 -0.7195 -2.3786 -0.5870 43 1 0.1734 -1.3379 -1.7111 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034238534.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:23 Heat of formation + Delta-G solvation = 96.193810 kcal Electronic energy + Delta-G solvation = -28236.158497 eV Core-core repulsion = 24318.510410 eV Total energy + Delta-G solvation = -3917.648087 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.56945 -41.47324 -39.98246 -38.96781 -36.14198 -35.49463 -35.17356 -33.11023 -32.67440 -32.42373 -31.20848 -27.97536 -27.01562 -25.88744 -25.26647 -24.55342 -23.91754 -22.28645 -21.48909 -20.93256 -20.04619 -19.62340 -18.97675 -18.58520 -17.79887 -17.29318 -17.03208 -16.51251 -16.16223 -16.02807 -15.68542 -15.29657 -15.11167 -14.61343 -14.57020 -14.22518 -14.11003 -14.06348 -13.74937 -13.59626 -13.02291 -13.00004 -12.92696 -12.84696 -12.79159 -12.44856 -12.23116 -12.07057 -11.87598 -11.57632 -11.47985 -11.36622 -11.14277 -10.78579 -10.49427 -10.46984 -10.29557 -10.03289 -8.64442 -7.83910 -5.31524 -1.12251 -0.21017 0.85133 0.95780 1.45977 1.46981 1.54128 1.59181 1.95414 2.50424 2.51920 2.54900 2.98536 3.16966 3.28869 3.50548 3.63101 3.76220 3.94698 4.08274 4.18362 4.22252 4.31006 4.42769 4.47263 4.64014 4.69534 4.72301 4.85957 4.97582 5.09062 5.13052 5.14539 5.30991 5.32659 5.36249 5.45995 5.50419 5.56946 5.64675 5.71073 5.81227 6.09796 6.40170 6.51025 6.88813 7.06538 7.19026 7.94909 8.34735 9.19924 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.013111 B = 0.003395 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.129506 B = 8245.994225 C = 9196.063776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.048 4.048 3 Si 0.962 3.038 4 H -0.276 1.276 5 H -0.299 1.299 6 H -0.276 1.276 7 C -0.262 4.262 8 H 0.070 0.930 9 N -0.600 5.600 10 C 0.145 3.855 11 C -0.133 4.133 12 C -0.099 4.099 13 C -0.108 4.108 14 C 0.133 3.867 15 H 0.071 0.929 16 N -0.688 5.688 17 C 0.566 3.434 18 O -0.554 6.554 19 C 0.144 3.856 20 C -0.119 4.119 21 C 0.014 3.986 22 C -0.034 4.034 23 N -0.257 5.257 24 N 0.010 4.990 25 N -0.383 5.383 26 H 0.474 0.526 27 C 0.204 3.796 28 N -0.451 5.451 29 C 0.194 3.806 30 H 0.246 0.754 31 H 0.034 0.966 32 H 0.037 0.963 33 H 0.077 0.923 34 H 0.048 0.952 35 H 0.056 0.944 36 H 0.077 0.923 37 H 0.058 0.942 38 H 0.084 0.916 39 H 0.415 0.585 40 H 0.179 0.821 41 H 0.196 0.804 42 H -0.018 1.018 43 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.239 -8.408 -15.150 17.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.243 4.243 3 Si 0.790 3.210 4 H -0.202 1.202 5 H -0.226 1.226 6 H -0.201 1.201 7 C -0.392 4.392 8 H 0.087 0.913 9 N -0.322 5.322 10 C 0.019 3.981 11 C -0.173 4.173 12 C -0.137 4.137 13 C -0.146 4.146 14 C 0.027 3.973 15 H 0.089 0.911 16 N -0.338 5.338 17 C 0.350 3.650 18 O -0.431 6.431 19 C -0.010 4.010 20 C -0.143 4.143 21 C -0.016 4.016 22 C -0.162 4.162 23 N -0.133 5.133 24 N 0.027 4.973 25 N -0.118 5.118 26 H 0.326 0.674 27 C -0.041 4.041 28 N -0.167 5.167 29 C 0.068 3.932 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.096 0.904 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.096 0.904 37 H 0.077 0.923 38 H 0.102 0.898 39 H 0.252 0.748 40 H 0.196 0.804 41 H 0.214 0.786 42 H 0.000 1.000 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.514 -8.034 -15.783 18.276 hybrid contribution 0.696 1.309 0.712 1.644 sum -3.818 -6.726 -15.071 16.940 Atomic orbital electron populations 1.70268 1.06646 1.25483 1.55707 1.25763 0.95868 1.01368 1.01337 0.85429 0.77553 0.79559 0.78449 1.20163 1.22594 1.20150 1.19483 0.92675 0.85906 1.41147 0.91264 1.43723 1.32268 1.02794 1.53454 1.20966 0.95127 0.87005 0.95025 1.21327 0.98670 1.00034 0.97251 1.20226 0.99839 0.97047 0.96613 1.21219 0.93296 1.00508 0.99545 1.21510 0.90077 0.98229 0.87458 0.91139 1.45950 1.06424 1.60779 1.20675 1.18034 0.82694 0.78801 0.85498 1.90802 1.76472 1.44684 1.31116 1.21097 0.93648 0.95762 0.90450 1.21907 0.91328 0.99697 1.01364 1.20887 1.02997 0.90817 0.86920 1.21008 0.92484 1.05454 0.97220 1.75398 1.21317 1.14096 1.02522 1.78041 0.87361 1.12814 1.19120 1.44695 1.11575 1.45013 1.10527 0.67438 1.19922 0.91901 1.01963 0.90328 1.66170 1.39430 1.12068 0.99072 1.20917 0.87145 0.95501 0.89652 0.94512 0.94750 0.94416 0.90424 0.93333 0.92497 0.90418 0.92298 0.89801 0.74784 0.80389 0.78641 1.00033 0.93588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.99 11.01 21.65 0.24 -55.76 16 2 C -0.05 -2.67 4.87 84.86 0.41 -2.26 16 3 Si 0.96 44.67 29.58 68.60 2.03 46.70 16 4 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 5 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 6 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 7 C -0.26 -14.10 9.44 84.03 0.79 -13.30 16 8 H 0.07 3.61 7.88 -2.91 -0.02 3.59 16 9 N -0.60 -29.52 2.27 -698.38 -1.59 -31.11 16 10 C 0.15 5.91 5.66 87.38 0.49 6.41 16 11 C -0.13 -4.20 5.74 29.39 0.17 -4.04 16 12 C -0.10 -2.76 5.15 28.61 0.15 -2.62 16 13 C -0.11 -3.32 5.06 29.76 0.15 -3.17 16 14 C 0.13 4.91 2.27 44.62 0.10 5.01 16 15 H 0.07 2.73 6.75 -2.39 -0.02 2.71 16 16 N -0.69 -22.42 4.97 -446.91 -2.22 -24.64 16 17 C 0.57 18.92 7.77 86.87 0.67 19.60 16 18 O -0.55 -21.99 15.95 -3.76 -0.06 -22.05 16 19 C 0.14 3.86 6.74 42.05 0.28 4.14 16 20 C -0.12 -2.51 9.55 22.35 0.21 -2.29 16 21 C 0.01 0.25 10.16 22.35 0.23 0.47 16 22 C -0.03 -0.74 7.38 39.83 0.29 -0.45 16 23 N -0.26 -5.85 12.43 -52.30 -0.65 -6.50 16 24 N 0.01 0.21 13.28 37.02 0.49 0.70 16 25 N -0.38 -6.56 7.06 -55.42 -0.39 -6.95 16 26 H 0.47 4.56 8.96 -219.85 -1.97 2.59 16 27 C 0.20 4.54 8.56 134.30 1.15 5.69 16 28 N -0.45 -11.18 9.54 -182.09 -1.74 -12.92 16 29 C 0.19 9.50 4.25 86.49 0.37 9.86 16 30 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 31 H 0.03 1.37 8.07 -2.39 -0.02 1.35 16 32 H 0.04 1.57 7.99 -2.39 -0.02 1.55 16 33 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.06 1.54 7.36 -2.39 -0.02 1.53 16 36 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.06 2.13 7.48 -2.39 -0.02 2.11 16 38 H 0.08 2.07 7.94 -2.39 -0.02 2.05 16 39 H 0.41 11.73 7.85 -92.71 -0.73 11.00 16 40 H 0.18 3.35 7.61 -2.91 -0.02 3.33 16 41 H 0.20 1.87 8.06 -2.91 -0.02 1.84 16 42 H -0.02 -1.07 8.03 -2.39 -0.02 -1.09 16 43 H 0.05 2.51 6.31 -2.39 -0.02 2.50 16 Total: -1.00 -72.09 353.03 -0.02 -72.11 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: -1.62 Total: 17.36 kcal Atomic # 6 Polarization: 17.57 SS G_CDS: 5.48 Total: 23.05 kcal Atomic # 7 Polarization: -131.32 SS G_CDS: -5.85 Total: -137.17 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: -0.06 Total: -22.05 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -72.09 -0.02 -72.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034238534.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.305 kcal (2) G-P(sol) polarization free energy of solvation -72.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds