Wall clock time and date at job start Tue Mar 31 2020 04:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86797 * 119.99749 * 2 1 4 4 H 1.48498 * 109.47188 * 86.02009 * 3 2 1 5 5 H 1.48503 * 109.47057 * 326.01950 * 3 2 1 6 6 H 1.48494 * 109.47116 * 206.02318 * 3 2 1 7 7 C 1.38807 * 120.00085 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99848 * 160.30419 * 7 2 1 9 9 N 1.36933 * 120.00199 * 340.30112 * 7 2 1 10 10 C 1.50170 * 120.53876 * 336.68084 * 9 7 2 11 11 C 1.46243 * 107.53210 * 109.56279 * 10 9 7 12 12 C 1.52529 * 114.27473 * 58.41347 * 11 10 9 13 13 C 1.50134 * 105.41354 * 270.59047 * 12 11 10 14 14 C 1.54839 * 110.81390 * 97.68270 * 13 12 11 15 15 H 1.09001 * 109.35942 * 81.33887 * 14 13 12 16 16 N 1.46499 * 109.35822 * 200.92577 * 14 13 12 17 17 C 1.34778 * 120.00326 * 205.00159 * 16 14 13 18 18 O 1.21529 * 119.99757 * 359.97438 * 17 16 14 19 19 C 1.48110 * 120.00283 * 180.02562 * 17 16 14 20 20 C 1.39820 * 119.37479 * 179.73629 * 19 17 16 21 21 C 1.36977 * 119.60762 * 179.70281 * 20 19 17 22 22 C 1.39807 * 118.24936 * 0.56374 * 21 20 19 23 23 N 1.34659 * 135.00811 * 179.72011 * 22 21 20 24 24 N 1.28666 * 109.16177 * 179.97438 * 23 22 21 25 25 N 1.28767 * 111.84788 * 0.02562 * 24 23 22 26 26 H 0.96998 * 125.85477 * 180.02562 * 25 24 23 27 27 C 1.37248 * 108.28263 * 359.97438 * 25 24 23 28 28 N 1.31950 * 134.70705 * 180.02562 * 27 25 24 29 29 C 1.43436 * 120.53637 * 156.40255 * 9 7 2 30 30 H 0.96996 * 120.00447 * 359.97438 * 1 2 3 31 31 H 1.08990 * 109.84965 * 229.07408 * 10 9 7 32 32 H 1.08997 * 109.84542 * 349.99380 * 10 9 7 33 33 H 1.08995 * 108.51937 * 179.65089 * 11 10 9 34 34 H 1.08997 * 108.52311 * 297.32634 * 11 10 9 35 35 H 1.08998 * 110.25104 * 29.56458 * 12 11 10 36 36 H 1.09001 * 110.24854 * 151.47620 * 12 11 10 37 37 H 1.09000 * 109.20837 * 218.02810 * 13 12 11 38 38 H 1.08997 * 109.20367 * 337.34387 * 13 12 11 39 39 H 0.96996 * 119.99921 * 25.00609 * 16 14 13 40 40 H 1.07998 * 120.19482 * 359.97438 * 20 19 17 41 41 H 1.07999 * 120.87565 * 180.28218 * 21 20 19 42 42 H 1.08991 * 108.16323 * 33.30724 * 29 9 7 43 43 H 1.09001 * 108.15805 * 149.87591 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4135 2.0950 1.3967 5 1 1.4922 2.6269 -0.7825 6 1 3.5872 1.4174 -0.6142 7 6 2.0103 -1.2021 0.0005 8 1 3.0429 -1.2296 -0.3147 9 7 1.3858 -2.3531 0.4008 10 6 0.1887 -2.2967 1.3057 11 6 -0.9796 -2.6824 0.5152 12 6 -0.8834 -4.0704 -0.1099 13 6 -0.2355 -3.8613 -1.4480 14 6 1.2832 -4.1542 -1.3757 15 1 1.4476 -5.2295 -1.4458 16 7 1.9599 -3.4886 -2.4916 17 6 3.1349 -3.9653 -2.9482 18 8 3.6334 -4.9471 -2.4339 19 6 3.8193 -3.2920 -4.0761 20 6 5.0405 -3.7944 -4.5356 21 6 5.6745 -3.1790 -5.5824 22 6 5.0735 -2.0513 -6.1494 23 7 5.3865 -1.2075 -7.1511 24 7 4.4628 -0.3184 -7.2586 25 7 3.5267 -0.4927 -6.3917 26 1 2.7345 0.0582 -6.2924 27 6 3.8416 -1.5924 -5.6333 28 7 3.2653 -2.2218 -4.6269 29 6 1.8609 -3.6319 -0.0423 30 1 -0.4850 0.8400 0.0004 31 1 0.3194 -2.9907 2.1359 32 1 0.0606 -1.2837 1.6871 33 1 -1.8584 -2.6529 1.1593 34 1 -1.1129 -1.9535 -0.2841 35 1 -0.2672 -4.7215 0.5101 36 1 -1.8782 -4.4986 -0.2328 37 1 -0.6951 -4.5284 -2.1772 38 1 -0.3869 -2.8286 -1.7622 39 1 1.5622 -2.7047 -2.9018 40 1 5.4791 -4.6650 -4.0709 41 1 6.6162 -3.5525 -5.9567 42 1 2.9443 -3.5745 -0.1465 43 1 1.6380 -4.3645 0.7334 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034238535.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:26 Heat of formation + Delta-G solvation = 124.037764 kcal Electronic energy + Delta-G solvation = -28860.666672 eV Core-core repulsion = 24944.225990 eV Total energy + Delta-G solvation = -3916.440683 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.55254 -40.13003 -38.65129 -37.51888 -34.58409 -34.23823 -33.18533 -32.03415 -31.31313 -30.93233 -29.76847 -26.38834 -25.73985 -24.36003 -23.75249 -23.00833 -22.86071 -20.94656 -19.81651 -19.30843 -18.88347 -18.56850 -17.69292 -16.77912 -16.67553 -15.80169 -15.32778 -15.18761 -14.78078 -14.57553 -14.12740 -13.81912 -13.68270 -13.47902 -13.22631 -12.88830 -12.57565 -12.40262 -12.24763 -11.99534 -11.86376 -11.82992 -11.60269 -11.34212 -10.86850 -10.83923 -10.52759 -10.21273 -10.14559 -10.02916 -9.75929 -9.54992 -9.44803 -9.44263 -9.29148 -9.25483 -8.68354 -8.38265 -6.75110 -5.85944 -3.23688 -0.04475 0.79000 1.92452 1.95424 2.80400 3.30671 3.32034 3.38986 3.41077 3.57889 3.71131 4.06283 4.19732 4.44119 4.58726 4.76377 5.16484 5.25203 5.28579 5.33598 5.43966 5.53623 5.60203 5.69050 5.91086 6.06422 6.07796 6.15649 6.20761 6.38812 6.40552 6.47629 6.57905 6.79567 6.86290 6.92780 6.98296 7.09565 7.22724 7.25145 7.57370 7.69657 7.89232 7.94728 7.97253 8.36463 8.51045 9.13326 9.80424 10.33340 11.20497 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.011672 B = 0.004491 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2398.262289 B = 6233.128508 C = 7679.930565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.004 3.996 3 Si 0.895 3.105 4 H -0.289 1.289 5 H -0.294 1.294 6 H -0.283 1.283 7 C -0.238 4.238 8 H 0.064 0.936 9 N -0.582 5.582 10 C 0.164 3.836 11 C -0.131 4.131 12 C -0.112 4.112 13 C -0.110 4.110 14 C 0.113 3.887 15 H 0.076 0.924 16 N -0.672 5.672 17 C 0.563 3.437 18 O -0.540 6.540 19 C 0.160 3.840 20 C -0.122 4.122 21 C -0.006 4.006 22 C -0.029 4.029 23 N -0.242 5.242 24 N 0.005 4.995 25 N -0.401 5.401 26 H 0.460 0.540 27 C 0.219 3.781 28 N -0.439 5.439 29 C 0.150 3.850 30 H 0.252 0.748 31 H 0.006 0.994 32 H 0.089 0.911 33 H 0.025 0.975 34 H 0.100 0.900 35 H 0.058 0.942 36 H 0.049 0.951 37 H 0.040 0.960 38 H 0.080 0.920 39 H 0.412 0.588 40 H 0.166 0.834 41 H 0.158 0.842 42 H 0.038 0.962 43 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.065 -6.373 -9.049 11.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.194 4.194 3 Si 0.725 3.275 4 H -0.216 1.216 5 H -0.220 1.220 6 H -0.208 1.208 7 C -0.368 4.368 8 H 0.081 0.919 9 N -0.302 5.302 10 C 0.041 3.959 11 C -0.170 4.170 12 C -0.150 4.150 13 C -0.148 4.148 14 C 0.006 3.994 15 H 0.094 0.906 16 N -0.320 5.320 17 C 0.346 3.654 18 O -0.418 6.418 19 C 0.005 3.995 20 C -0.146 4.146 21 C -0.037 4.037 22 C -0.156 4.156 23 N -0.119 5.119 24 N 0.022 4.978 25 N -0.133 5.133 26 H 0.309 0.691 27 C -0.025 4.025 28 N -0.155 5.155 29 C 0.020 3.980 30 H 0.062 0.938 31 H 0.024 0.976 32 H 0.107 0.893 33 H 0.044 0.956 34 H 0.119 0.881 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.058 0.942 38 H 0.099 0.901 39 H 0.248 0.752 40 H 0.184 0.816 41 H 0.176 0.824 42 H 0.057 0.943 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 3.041 -5.698 -9.533 11.515 hybrid contribution -0.048 1.019 0.231 1.046 sum 2.993 -4.680 -9.302 10.834 Atomic orbital electron populations 1.69966 1.04908 1.25101 1.54346 1.24841 0.95178 0.97942 1.01474 0.86395 0.79170 0.84247 0.77650 1.21575 1.22024 1.20831 1.19145 0.93433 0.85231 1.38955 0.91858 1.44276 1.33756 1.00785 1.51397 1.20181 0.85333 1.00467 0.89923 1.21011 0.98089 0.95564 1.02289 1.20974 0.98655 0.98905 0.96458 1.21674 0.93177 1.02468 0.97500 1.22889 0.92167 0.95941 0.88448 0.90590 1.45949 1.20743 1.31441 1.33865 1.17585 0.81920 0.83819 0.82065 1.90773 1.65545 1.26474 1.58984 1.21465 0.93054 0.90124 0.94867 1.21763 0.94732 1.01806 0.96291 1.20481 0.99560 0.90524 0.93109 1.20666 0.96309 1.00135 0.98527 1.75374 1.18192 1.01973 1.16344 1.78075 0.93661 1.17514 1.08525 1.44688 1.21585 1.22554 1.24461 0.69146 1.19812 0.94234 0.92508 0.95945 1.66349 1.34526 1.07414 1.07229 1.20722 0.97028 0.88577 0.91704 0.93811 0.97580 0.89312 0.95630 0.88135 0.92355 0.93184 0.94154 0.90107 0.75213 0.81603 0.82448 0.94338 0.94226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.18 9.43 55.49 0.52 -22.66 16 2 C 0.00 0.09 4.91 -17.43 -0.09 0.01 16 3 Si 0.89 20.92 29.60 -169.99 -5.03 15.89 16 4 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.24 -6.01 9.62 -15.06 -0.14 -6.16 16 8 H 0.06 1.67 7.89 -52.49 -0.41 1.26 16 9 N -0.58 -13.27 2.61 -175.41 -0.46 -13.72 16 10 C 0.16 3.60 5.25 -5.20 -0.03 3.57 16 11 C -0.13 -2.60 5.02 -30.18 -0.15 -2.75 16 12 C -0.11 -1.88 5.76 -28.40 -0.16 -2.05 16 13 C -0.11 -1.88 5.23 -27.19 -0.14 -2.02 16 14 C 0.11 2.00 2.91 -66.22 -0.19 1.81 16 15 H 0.08 1.31 7.57 -51.93 -0.39 0.92 16 16 N -0.67 -11.74 5.07 -53.01 -0.27 -12.01 16 17 C 0.56 9.57 7.62 -12.21 -0.09 9.48 16 18 O -0.54 -10.03 15.95 5.34 0.09 -9.94 16 19 C 0.16 2.37 6.74 -82.94 -0.56 1.81 16 20 C -0.12 -1.45 9.55 -39.45 -0.38 -1.83 16 21 C -0.01 -0.06 10.16 -39.45 -0.40 -0.47 16 22 C -0.03 -0.38 7.38 -84.90 -0.63 -1.01 16 23 N -0.24 -3.32 12.43 32.12 0.40 -2.92 16 24 N 0.01 0.07 13.28 60.35 0.80 0.87 16 25 N -0.40 -4.68 7.06 31.13 0.22 -4.46 16 26 H 0.46 3.89 8.96 -190.26 -1.71 2.19 16 27 C 0.22 3.04 8.56 -156.29 -1.34 1.71 16 28 N -0.44 -6.60 9.54 -8.91 -0.08 -6.69 16 29 C 0.15 3.03 4.75 -4.92 -0.02 3.01 16 30 H 0.25 6.46 8.31 -40.82 -0.34 6.12 16 31 H 0.01 0.13 8.13 -51.93 -0.42 -0.30 16 32 H 0.09 2.20 6.06 -51.93 -0.31 1.88 16 33 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.10 2.29 5.28 -51.93 -0.27 2.02 16 35 H 0.06 0.96 6.28 -51.93 -0.33 0.64 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.08 1.60 6.58 -51.93 -0.34 1.26 16 39 H 0.41 7.36 7.75 -40.82 -0.32 7.04 16 40 H 0.17 1.69 7.61 -52.49 -0.40 1.29 16 41 H 0.16 1.15 8.06 -52.49 -0.42 0.72 16 42 H 0.04 0.84 7.80 -51.93 -0.41 0.44 16 43 H 0.04 0.76 6.89 -51.93 -0.36 0.40 16 LS Contribution 347.35 15.07 5.23 5.23 Total: -1.00 -28.72 347.35 -9.40 -38.12 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -6.50 Total: 7.16 kcal Atomic # 6 Polarization: 9.45 SS G_CDS: -4.33 Total: 5.12 kcal Atomic # 7 Polarization: -62.72 SS G_CDS: 1.13 Total: -61.59 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.09 Total: -9.94 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.03 Total: 15.89 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.72 -9.40 -38.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034238535.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.161 kcal (2) G-P(sol) polarization free energy of solvation -28.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds