Wall clock time and date at job start Tue Mar 31 2020 04:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86797 * 119.99749 * 2 1 4 4 H 1.48498 * 109.47188 * 86.02009 * 3 2 1 5 5 H 1.48503 * 109.47057 * 326.01950 * 3 2 1 6 6 H 1.48494 * 109.47116 * 206.02318 * 3 2 1 7 7 C 1.38807 * 120.00085 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99848 * 160.30419 * 7 2 1 9 9 N 1.36933 * 120.00199 * 340.30112 * 7 2 1 10 10 C 1.50170 * 120.53876 * 336.68084 * 9 7 2 11 11 C 1.46243 * 107.53210 * 109.56279 * 10 9 7 12 12 C 1.52529 * 114.27473 * 58.41347 * 11 10 9 13 13 C 1.50134 * 105.41354 * 270.59047 * 12 11 10 14 14 C 1.54839 * 110.81390 * 97.68270 * 13 12 11 15 15 H 1.09001 * 109.35942 * 81.33887 * 14 13 12 16 16 N 1.46499 * 109.35822 * 200.92577 * 14 13 12 17 17 C 1.34778 * 120.00326 * 205.00159 * 16 14 13 18 18 O 1.21529 * 119.99757 * 359.97438 * 17 16 14 19 19 C 1.48110 * 120.00283 * 180.02562 * 17 16 14 20 20 C 1.39820 * 119.37479 * 179.73629 * 19 17 16 21 21 C 1.36977 * 119.60762 * 179.70281 * 20 19 17 22 22 C 1.39807 * 118.24936 * 0.56374 * 21 20 19 23 23 N 1.34659 * 135.00811 * 179.72011 * 22 21 20 24 24 N 1.28666 * 109.16177 * 179.97438 * 23 22 21 25 25 N 1.28767 * 111.84788 * 0.02562 * 24 23 22 26 26 H 0.96998 * 125.85477 * 180.02562 * 25 24 23 27 27 C 1.37248 * 108.28263 * 359.97438 * 25 24 23 28 28 N 1.31950 * 134.70705 * 180.02562 * 27 25 24 29 29 C 1.43436 * 120.53637 * 156.40255 * 9 7 2 30 30 H 0.96996 * 120.00447 * 359.97438 * 1 2 3 31 31 H 1.08990 * 109.84965 * 229.07408 * 10 9 7 32 32 H 1.08997 * 109.84542 * 349.99380 * 10 9 7 33 33 H 1.08995 * 108.51937 * 179.65089 * 11 10 9 34 34 H 1.08997 * 108.52311 * 297.32634 * 11 10 9 35 35 H 1.08998 * 110.25104 * 29.56458 * 12 11 10 36 36 H 1.09001 * 110.24854 * 151.47620 * 12 11 10 37 37 H 1.09000 * 109.20837 * 218.02810 * 13 12 11 38 38 H 1.08997 * 109.20367 * 337.34387 * 13 12 11 39 39 H 0.96996 * 119.99921 * 25.00609 * 16 14 13 40 40 H 1.07998 * 120.19482 * 359.97438 * 20 19 17 41 41 H 1.07999 * 120.87565 * 180.28218 * 21 20 19 42 42 H 1.08991 * 108.16323 * 33.30724 * 29 9 7 43 43 H 1.09001 * 108.15805 * 149.87591 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4135 2.0950 1.3967 5 1 1.4922 2.6269 -0.7825 6 1 3.5872 1.4174 -0.6142 7 6 2.0103 -1.2021 0.0005 8 1 3.0429 -1.2296 -0.3147 9 7 1.3858 -2.3531 0.4008 10 6 0.1887 -2.2967 1.3057 11 6 -0.9796 -2.6824 0.5152 12 6 -0.8834 -4.0704 -0.1099 13 6 -0.2355 -3.8613 -1.4480 14 6 1.2832 -4.1542 -1.3757 15 1 1.4476 -5.2295 -1.4458 16 7 1.9599 -3.4886 -2.4916 17 6 3.1349 -3.9653 -2.9482 18 8 3.6334 -4.9471 -2.4339 19 6 3.8193 -3.2920 -4.0761 20 6 5.0405 -3.7944 -4.5356 21 6 5.6745 -3.1790 -5.5824 22 6 5.0735 -2.0513 -6.1494 23 7 5.3865 -1.2075 -7.1511 24 7 4.4628 -0.3184 -7.2586 25 7 3.5267 -0.4927 -6.3917 26 1 2.7345 0.0582 -6.2924 27 6 3.8416 -1.5924 -5.6333 28 7 3.2653 -2.2218 -4.6269 29 6 1.8609 -3.6319 -0.0423 30 1 -0.4850 0.8400 0.0004 31 1 0.3194 -2.9907 2.1359 32 1 0.0606 -1.2837 1.6871 33 1 -1.8584 -2.6529 1.1593 34 1 -1.1129 -1.9535 -0.2841 35 1 -0.2672 -4.7215 0.5101 36 1 -1.8782 -4.4986 -0.2328 37 1 -0.6951 -4.5284 -2.1772 38 1 -0.3869 -2.8286 -1.7622 39 1 1.5622 -2.7047 -2.9018 40 1 5.4791 -4.6650 -4.0709 41 1 6.6162 -3.5525 -5.9567 42 1 2.9443 -3.5745 -0.1465 43 1 1.6380 -4.3645 0.7334 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034238535.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:26 Heat of formation + Delta-G solvation = 105.248454 kcal Electronic energy + Delta-G solvation = -28861.481438 eV Core-core repulsion = 24944.225990 eV Total energy + Delta-G solvation = -3917.255448 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.55495 -41.37039 -39.95512 -38.96250 -35.94168 -35.44374 -34.77551 -33.10100 -32.83327 -32.32733 -31.20665 -28.02824 -27.03276 -25.63789 -25.01967 -24.60891 -23.90085 -22.30554 -21.30283 -20.78377 -19.99355 -19.60041 -18.91565 -18.53639 -17.79295 -17.14469 -16.86570 -16.51818 -16.27031 -16.01265 -15.54404 -15.39733 -15.06787 -14.59221 -14.42714 -14.12949 -13.99791 -13.76549 -13.59432 -13.40536 -13.24820 -13.18882 -13.00121 -12.83872 -12.70084 -12.38396 -12.32889 -11.92245 -11.79682 -11.43840 -11.26419 -11.11790 -10.90588 -10.70070 -10.47515 -10.43579 -10.28072 -9.95507 -8.58657 -7.80961 -5.19456 -1.08071 -0.18289 0.87285 0.98746 1.40330 1.46235 1.50252 1.64638 2.11017 2.51648 2.56767 2.56806 3.03911 3.19651 3.31733 3.57238 3.62934 3.70281 3.98493 4.19437 4.22207 4.24585 4.45258 4.57374 4.61171 4.69463 4.71731 4.75446 4.88056 4.94142 5.08754 5.16566 5.25356 5.34092 5.35706 5.47552 5.48923 5.62036 5.68060 5.72139 5.83592 6.16526 6.25842 6.43443 6.61196 6.89137 7.14500 7.21180 7.93451 8.43100 9.22186 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.011672 B = 0.004491 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2398.262289 B = 6233.128508 C = 7679.930565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.031 4.031 3 Si 0.941 3.059 4 H -0.293 1.293 5 H -0.295 1.295 6 H -0.286 1.286 7 C -0.238 4.238 8 H 0.046 0.954 9 N -0.592 5.592 10 C 0.167 3.833 11 C -0.123 4.123 12 C -0.103 4.103 13 C -0.101 4.101 14 C 0.120 3.880 15 H 0.088 0.912 16 N -0.677 5.677 17 C 0.564 3.436 18 O -0.558 6.558 19 C 0.141 3.859 20 C -0.117 4.117 21 C 0.013 3.987 22 C -0.036 4.036 23 N -0.255 5.255 24 N 0.007 4.993 25 N -0.389 5.389 26 H 0.471 0.529 27 C 0.202 3.798 28 N -0.457 5.457 29 C 0.152 3.848 30 H 0.246 0.754 31 H 0.021 0.979 32 H 0.056 0.944 33 H 0.035 0.965 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.076 0.924 37 H 0.065 0.935 38 H 0.051 0.949 39 H 0.408 0.592 40 H 0.185 0.815 41 H 0.199 0.801 42 H 0.016 0.984 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.546 -7.718 -9.902 13.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.228 4.228 3 Si 0.772 3.228 4 H -0.220 1.220 5 H -0.222 1.222 6 H -0.212 1.212 7 C -0.369 4.369 8 H 0.064 0.936 9 N -0.313 5.313 10 C 0.044 3.956 11 C -0.162 4.162 12 C -0.141 4.141 13 C -0.139 4.139 14 C 0.013 3.987 15 H 0.106 0.894 16 N -0.325 5.325 17 C 0.348 3.652 18 O -0.437 6.437 19 C -0.013 4.013 20 C -0.140 4.140 21 C -0.018 4.018 22 C -0.163 4.163 23 N -0.132 5.132 24 N 0.024 4.976 25 N -0.123 5.123 26 H 0.322 0.678 27 C -0.043 4.043 28 N -0.174 5.174 29 C 0.022 3.978 30 H 0.056 0.944 31 H 0.039 0.961 32 H 0.074 0.926 33 H 0.053 0.947 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.084 0.916 38 H 0.070 0.930 39 H 0.244 0.756 40 H 0.202 0.798 41 H 0.216 0.784 42 H 0.034 0.966 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.514 -7.051 -10.391 13.040 hybrid contribution -0.144 1.438 0.477 1.521 sum 3.370 -5.614 -9.914 11.881 Atomic orbital electron populations 1.70089 1.05298 1.24865 1.55047 1.25251 0.95789 0.99584 1.02147 0.85676 0.78050 0.82048 0.77018 1.22026 1.22206 1.21229 1.19068 0.92776 0.86455 1.38599 0.93590 1.44314 1.34076 1.00966 1.51972 1.20115 0.85967 0.99042 0.90519 1.20834 0.97387 0.96769 1.01194 1.20938 1.00323 0.97018 0.95827 1.21562 0.92707 1.01205 0.98398 1.22716 0.92586 0.96291 0.87137 0.89422 1.45969 1.21187 1.31439 1.33889 1.17893 0.81474 0.83519 0.82292 1.90748 1.65865 1.27254 1.59788 1.21310 0.94281 0.90753 0.94926 1.21936 0.93532 1.02185 0.96395 1.20916 1.00301 0.88891 0.91650 1.21051 0.96195 1.00725 0.98348 1.75367 1.18605 1.02381 1.16804 1.78029 0.93737 1.17351 1.08525 1.44735 1.21727 1.22131 1.23698 0.67772 1.19979 0.94902 0.93226 0.96204 1.66213 1.35351 1.07902 1.07936 1.20723 0.95682 0.87803 0.93545 0.94406 0.96057 0.92550 0.94663 0.91159 0.91559 0.90524 0.91643 0.93047 0.75603 0.79784 0.78415 0.96595 0.92862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.77 9.43 21.65 0.20 -47.57 16 2 C -0.03 -1.62 4.91 84.86 0.42 -1.20 16 3 Si 0.94 43.75 29.60 68.60 2.03 45.78 16 4 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 5 H -0.30 -13.72 7.11 99.48 0.71 -13.01 16 6 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 7 C -0.24 -12.29 9.62 84.03 0.81 -11.48 16 8 H 0.05 2.50 7.89 -2.91 -0.02 2.48 16 9 N -0.59 -27.18 2.61 -708.86 -1.85 -29.03 16 10 C 0.17 7.30 5.25 83.58 0.44 7.74 16 11 C -0.12 -4.79 5.02 28.36 0.14 -4.65 16 12 C -0.10 -3.23 5.76 29.51 0.17 -3.06 16 13 C -0.10 -3.29 5.23 30.30 0.16 -3.13 16 14 C 0.12 4.14 2.91 46.10 0.13 4.27 16 15 H 0.09 2.86 7.57 -2.39 -0.02 2.84 16 16 N -0.68 -23.61 5.07 -439.90 -2.23 -25.84 16 17 C 0.56 18.94 7.62 86.86 0.66 19.60 16 18 O -0.56 -20.26 15.95 -3.81 -0.06 -20.32 16 19 C 0.14 4.09 6.74 42.05 0.28 4.37 16 20 C -0.12 -2.54 9.55 22.36 0.21 -2.33 16 21 C 0.01 0.24 10.16 22.35 0.23 0.47 16 22 C -0.04 -0.88 7.38 39.83 0.29 -0.58 16 23 N -0.25 -6.58 12.43 -52.29 -0.65 -7.23 16 24 N 0.01 0.17 13.28 37.02 0.49 0.66 16 25 N -0.39 -8.77 7.06 -55.42 -0.39 -9.16 16 26 H 0.47 7.72 8.96 -219.84 -1.97 5.75 16 27 C 0.20 5.43 8.56 134.31 1.15 6.58 16 28 N -0.46 -13.63 9.54 -182.09 -1.74 -15.36 16 29 C 0.15 6.07 4.75 87.42 0.41 6.49 16 30 H 0.25 12.89 8.31 -92.71 -0.77 12.12 16 31 H 0.02 0.86 8.13 -2.39 -0.02 0.84 16 32 H 0.06 2.84 6.06 -2.39 -0.01 2.82 16 33 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.07 3.22 5.28 -2.39 -0.01 3.21 16 35 H 0.07 2.00 6.28 -2.39 -0.02 1.98 16 36 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.05 2.02 6.58 -2.39 -0.02 2.00 16 39 H 0.41 14.83 7.75 -92.71 -0.72 14.11 16 40 H 0.18 3.29 7.61 -2.91 -0.02 3.27 16 41 H 0.20 2.03 8.06 -2.91 -0.02 2.01 16 42 H 0.02 0.70 7.80 -2.39 -0.02 0.68 16 43 H 0.05 1.96 6.89 -2.39 -0.02 1.94 16 Total: -1.00 -62.27 347.35 -0.28 -62.54 By element: Atomic # 1 Polarization: 24.03 SS G_CDS: -1.60 Total: 22.43 kcal Atomic # 6 Polarization: 17.58 SS G_CDS: 5.51 Total: 23.09 kcal Atomic # 7 Polarization: -127.36 SS G_CDS: -6.16 Total: -133.53 kcal Atomic # 8 Polarization: -20.26 SS G_CDS: -0.06 Total: -20.32 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -62.27 -0.28 -62.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034238535.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.792 kcal (2) G-P(sol) polarization free energy of solvation -62.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds