Wall clock time and date at job start Tue Mar 31 2020 04:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86798 * 119.99685 * 2 1 4 4 H 1.48506 * 109.47085 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47417 * 299.99940 * 3 2 1 6 6 H 1.48501 * 109.47612 * 60.00018 * 3 2 1 7 7 C 1.38805 * 119.99914 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99734 * 195.68484 * 7 2 1 9 9 N 1.36937 * 120.00123 * 15.68889 * 7 2 1 10 10 C 1.47598 * 118.64286 * 26.49948 * 9 7 2 11 11 C 1.53951 * 112.14229 * 137.86875 * 10 9 7 12 12 C 1.50885 * 110.09319 * 319.43789 * 11 10 9 13 13 C 1.52566 * 109.36045 * 91.88782 * 12 11 10 14 14 C 1.47095 * 114.32709 * 274.98587 * 13 12 11 15 15 H 1.09002 * 109.32524 * 302.71072 * 14 13 12 16 16 N 1.46494 * 109.32847 * 183.05735 * 14 13 12 17 17 C 1.34776 * 119.99759 * 154.64916 * 16 14 13 18 18 O 1.21543 * 120.00454 * 0.02562 * 17 16 14 19 19 C 1.47880 * 119.99647 * 180.02562 * 17 16 14 20 20 C 1.39449 * 121.11761 * 359.97438 * 19 17 16 21 21 C 1.38615 * 119.37552 * 179.97438 * 20 19 17 22 22 N 1.31587 * 121.64042 * 0.02562 * 21 20 19 23 23 C 1.32208 * 121.86397 * 359.97438 * 22 21 20 24 24 N 1.37211 * 134.67455 * 180.02562 * 23 22 21 25 25 H 0.97002 * 125.86527 * 0.02562 * 24 23 22 26 26 N 1.28777 * 108.26026 * 179.97438 * 24 23 22 27 27 N 1.28692 * 111.76155 * 0.02562 * 26 24 23 28 28 C 1.34388 * 109.14994 * 359.97438 * 27 26 24 29 29 C 1.44660 * 118.81129 * 206.50809 * 9 7 2 30 30 H 0.97002 * 119.99906 * 0.02562 * 1 2 3 31 31 H 1.09001 * 108.95361 * 17.18362 * 10 9 7 32 32 H 1.09003 * 108.94880 * 258.54988 * 10 9 7 33 33 H 1.08998 * 109.37052 * 199.23909 * 11 10 9 34 34 H 1.09003 * 109.26298 * 79.55951 * 11 10 9 35 35 H 1.09005 * 109.48520 * 331.91763 * 12 11 10 36 36 H 1.09000 * 109.48997 * 211.85869 * 12 11 10 37 37 H 1.08994 * 108.51002 * 153.72842 * 13 12 11 38 38 H 1.09000 * 108.38398 * 36.14633 * 13 12 11 39 39 H 0.96998 * 120.00336 * 334.65361 * 16 14 13 40 40 H 1.07997 * 120.30841 * 0.02694 * 20 19 17 41 41 H 1.08005 * 119.17805 * 180.02562 * 21 20 19 42 42 H 1.09006 * 109.61620 * 150.83252 * 29 9 7 43 43 H 1.09000 * 109.32709 * 30.88355 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0601 -1.2194 0.2534 9 7 1.3638 -2.3661 -0.3196 10 6 0.1800 -2.2992 -1.1985 11 6 0.1723 -3.4253 -2.2483 12 6 1.5637 -3.6364 -2.7922 13 6 2.2717 -4.7077 -1.9684 14 6 2.9232 -4.2030 -0.7499 15 1 3.6396 -3.4268 -1.0190 16 7 3.6266 -5.3028 -0.0852 17 6 4.6794 -5.0432 0.7152 18 8 5.0450 -3.8967 0.8860 19 6 5.3898 -6.1534 1.3858 20 6 4.9899 -7.4773 1.2068 21 6 5.6822 -8.4899 1.8525 22 7 6.7101 -8.2343 2.6332 23 6 7.1375 -7.0009 2.8430 24 7 8.1511 -6.4436 3.5811 25 1 8.7878 -6.9284 4.1292 26 7 8.1122 -5.1665 3.4202 27 7 7.1559 -4.8134 2.6347 28 6 6.4933 -5.9090 2.2266 29 6 1.8663 -3.6125 0.2157 30 1 -0.4850 0.8401 -0.0004 31 1 0.1736 -1.3374 -1.7113 32 1 -0.7193 -2.3787 -0.5877 33 1 -0.4977 -3.1543 -3.0643 34 1 -0.1781 -4.3472 -1.7841 35 1 2.1230 -2.7027 -2.7324 36 1 1.5028 -3.9582 -3.8319 37 1 3.0277 -5.1820 -2.5940 38 1 1.5384 -5.4615 -1.6818 39 1 3.3348 -6.2178 -0.2212 40 1 4.1494 -7.7115 0.5704 41 1 5.3700 -9.5141 1.7112 42 1 1.0444 -4.3193 0.3303 43 1 2.3249 -3.4290 1.1874 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034303700.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:47 Heat of formation + Delta-G solvation = 124.817338 kcal Electronic energy + Delta-G solvation = -28333.811891 eV Core-core repulsion = 24417.405013 eV Total energy + Delta-G solvation = -3916.406878 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.64565 -40.10976 -38.97768 -37.60858 -34.65243 -34.40228 -33.30144 -32.31731 -31.09403 -30.84469 -29.90888 -26.22846 -25.66258 -24.30938 -24.15023 -23.51448 -22.73473 -21.00998 -20.25713 -19.21369 -18.93802 -18.65999 -17.61529 -16.85399 -16.56124 -16.14276 -15.58945 -15.17946 -15.06517 -14.53269 -14.34812 -13.98845 -13.60019 -13.46543 -13.33573 -13.02740 -12.64547 -12.53550 -12.51590 -12.10281 -11.88173 -11.79589 -11.51194 -11.01963 -10.90491 -10.75902 -10.51640 -10.27207 -10.14199 -10.07573 -9.70453 -9.62738 -9.60978 -9.55707 -9.55026 -9.35089 -8.84760 -8.28458 -6.60045 -5.70251 -3.13460 -0.20937 0.54771 1.86211 1.97920 2.76638 3.04797 3.45708 3.50540 3.52828 3.54108 3.60677 3.94222 4.14325 4.26525 4.45420 4.61434 4.81467 5.15477 5.18680 5.24615 5.36148 5.40716 5.46183 5.55692 5.74572 5.83313 5.98667 6.03218 6.13035 6.29133 6.29920 6.38363 6.60382 6.61690 6.66567 6.74596 6.83013 6.93890 7.10445 7.14044 7.47807 7.67237 7.75982 7.93788 7.98353 8.39142 8.56329 9.33012 9.97601 10.41068 11.37457 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.014547 B = 0.003472 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.368896 B = 8061.469452 C = 9584.849582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.005 3.995 3 Si 0.898 3.102 4 H -0.275 1.275 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.254 4.254 8 H 0.071 0.929 9 N -0.583 5.583 10 C 0.175 3.825 11 C -0.143 4.143 12 C -0.101 4.101 13 C -0.112 4.112 14 C 0.114 3.886 15 H 0.091 0.909 16 N -0.713 5.713 17 C 0.541 3.459 18 O -0.485 6.485 19 C 0.002 3.998 20 C -0.148 4.148 21 C 0.161 3.839 22 N -0.463 5.463 23 C 0.214 3.786 24 N -0.408 5.408 25 H 0.457 0.543 26 N 0.000 5.000 27 N -0.202 5.202 28 C 0.002 3.998 29 C 0.157 3.843 30 H 0.251 0.749 31 H 0.076 0.924 32 H 0.024 0.976 33 H 0.052 0.948 34 H 0.044 0.956 35 H 0.077 0.923 36 H 0.048 0.952 37 H 0.048 0.952 38 H 0.054 0.946 39 H 0.390 0.610 40 H 0.158 0.842 41 H 0.182 0.818 42 H 0.032 0.968 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.035 -21.738 0.266 23.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.193 4.193 3 Si 0.728 3.272 4 H -0.200 1.200 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.384 4.384 8 H 0.089 0.911 9 N -0.304 5.304 10 C 0.050 3.950 11 C -0.182 4.182 12 C -0.139 4.139 13 C -0.150 4.150 14 C 0.008 3.992 15 H 0.109 0.891 16 N -0.365 5.365 17 C 0.324 3.676 18 O -0.357 6.357 19 C -0.014 4.014 20 C -0.171 4.171 21 C -0.011 4.011 22 N -0.177 5.177 23 C -0.030 4.030 24 N -0.138 5.138 25 H 0.305 0.695 26 N 0.018 4.982 27 N -0.078 5.078 28 C -0.127 4.127 29 C 0.027 3.973 30 H 0.061 0.939 31 H 0.094 0.906 32 H 0.042 0.958 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.096 0.904 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.073 0.927 39 H 0.225 0.775 40 H 0.176 0.824 41 H 0.198 0.802 42 H 0.051 0.949 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 10.264 -19.906 1.178 22.428 hybrid contribution -0.170 -0.370 -0.282 0.495 sum 10.094 -20.277 0.896 22.668 Atomic orbital electron populations 1.70092 1.05192 1.25201 1.54654 1.25002 0.95239 0.98330 1.00756 0.86268 0.79807 0.84002 0.77112 1.19985 1.21676 1.21800 1.19382 0.92814 0.84663 1.41551 0.91090 1.43613 1.32125 1.01516 1.53108 1.21064 0.88442 0.95845 0.89608 1.22082 0.95865 1.00637 0.99646 1.20830 0.97079 0.99457 0.96536 1.20576 0.99223 0.99020 0.96143 1.21364 0.96128 0.87859 0.93865 0.89068 1.46069 1.31392 1.10763 1.48315 1.17841 0.81118 0.88054 0.80546 1.90953 1.64610 1.20558 1.59621 1.19914 0.92514 0.94675 0.94347 1.22397 1.01800 0.91477 1.01448 1.22814 0.88355 1.00316 0.89619 1.66312 1.14818 1.19093 1.17505 1.19875 0.93474 0.91697 0.97969 1.44722 1.25517 1.05887 1.37649 0.69545 1.78304 1.15237 0.92547 1.12160 1.75654 1.01629 1.22998 1.07543 1.20175 0.99379 0.91019 1.02165 1.20932 0.93316 0.88543 0.94506 0.93878 0.90610 0.95750 0.92906 0.93692 0.90400 0.93351 0.93324 0.92748 0.77544 0.82440 0.80154 0.94941 0.93261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.49 11.01 55.49 0.61 -25.88 16 2 C 0.00 0.13 4.87 -17.43 -0.08 0.05 16 3 Si 0.90 22.68 29.58 -169.99 -5.03 17.65 16 4 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 7 C -0.25 -7.14 9.45 -15.06 -0.14 -7.28 16 8 H 0.07 2.08 7.88 -52.49 -0.41 1.67 16 9 N -0.58 -14.36 2.27 -172.03 -0.39 -14.75 16 10 C 0.18 4.08 4.66 -2.94 -0.01 4.06 16 11 C -0.14 -2.54 5.71 -27.30 -0.16 -2.69 16 12 C -0.10 -1.65 5.51 -28.02 -0.15 -1.80 16 13 C -0.11 -1.61 4.55 -29.79 -0.14 -1.75 16 14 C 0.11 1.96 2.34 -69.78 -0.16 1.80 16 15 H 0.09 1.92 7.57 -51.93 -0.39 1.53 16 16 N -0.71 -9.68 5.02 -56.56 -0.28 -9.96 16 17 C 0.54 8.74 7.74 -12.31 -0.10 8.65 16 18 O -0.49 -10.51 15.93 5.33 0.08 -10.43 16 19 C 0.00 0.03 5.92 -104.50 -0.62 -0.59 16 20 C -0.15 -1.12 9.61 -38.99 -0.37 -1.49 16 21 C 0.16 1.07 11.14 -17.52 -0.20 0.87 16 22 N -0.46 -4.39 10.35 -12.38 -0.13 -4.52 16 23 C 0.21 2.47 8.56 -156.21 -1.34 1.13 16 24 N -0.41 -4.05 7.06 31.11 0.22 -3.83 16 25 H 0.46 2.47 8.96 -190.25 -1.71 0.76 16 26 N 0.00 0.01 13.29 60.35 0.80 0.81 16 27 N -0.20 -3.41 11.92 32.23 0.38 -3.03 16 28 C 0.00 0.03 6.97 -84.72 -0.59 -0.56 16 29 C 0.16 3.28 5.24 -4.04 -0.02 3.26 16 30 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 31 H 0.08 1.98 6.33 -51.93 -0.33 1.65 16 32 H 0.02 0.62 8.03 -51.93 -0.42 0.20 16 33 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.04 0.73 7.31 -51.93 -0.38 0.35 16 35 H 0.08 1.52 7.48 -51.93 -0.39 1.13 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.05 0.69 7.34 -51.93 -0.38 0.31 16 39 H 0.39 3.55 6.72 -40.82 -0.27 3.28 16 40 H 0.16 0.60 6.53 -52.49 -0.34 0.26 16 41 H 0.18 0.39 8.06 -52.48 -0.42 -0.03 16 42 H 0.03 0.63 8.05 -51.93 -0.42 0.21 16 43 H 0.05 1.16 7.97 -51.93 -0.41 0.74 16 LS Contribution 351.00 15.07 5.29 5.29 Total: -1.00 -36.48 351.00 -9.21 -45.69 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -6.68 Total: -0.68 kcal Atomic # 6 Polarization: 7.73 SS G_CDS: -4.08 Total: 3.64 kcal Atomic # 7 Polarization: -62.38 SS G_CDS: 1.21 Total: -61.16 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.08 Total: -10.43 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.03 Total: 17.65 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -36.48 -9.21 -45.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034303700.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.506 kcal (2) G-P(sol) polarization free energy of solvation -36.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds