Wall clock time and date at job start Tue Mar 31 2020 04:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 120.00455 * 2 1 4 4 H 1.48494 * 109.46784 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47014 * 239.99611 * 3 2 1 6 6 H 1.48496 * 109.47313 * 119.99639 * 3 2 1 7 7 C 1.38819 * 119.99532 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99723 * 139.29933 * 7 2 1 9 9 N 1.36931 * 120.00300 * 319.30052 * 7 2 1 10 10 C 1.50172 * 120.53516 * 352.84705 * 9 7 2 11 11 C 1.46237 * 107.53509 * 109.56592 * 10 9 7 12 12 C 1.52533 * 114.27420 * 58.40495 * 11 10 9 13 13 C 1.50120 * 105.41491 * 270.59638 * 12 11 10 14 14 C 1.54842 * 110.81478 * 97.68551 * 13 12 11 15 15 H 1.09006 * 109.35980 * 81.34092 * 14 13 12 16 16 N 1.46504 * 109.35713 * 200.92560 * 14 13 12 17 17 C 1.34777 * 119.99983 * 205.00095 * 16 14 13 18 18 O 1.21542 * 120.00056 * 0.02562 * 17 16 14 19 19 C 1.47873 * 120.00074 * 179.97438 * 17 16 14 20 20 C 1.39450 * 121.11556 * 359.97438 * 19 17 16 21 21 C 1.38618 * 119.37895 * 179.97438 * 20 19 17 22 22 N 1.31588 * 121.63499 * 359.97438 * 21 20 19 23 23 C 1.32209 * 121.86622 * 0.02562 * 22 21 20 24 24 N 1.37208 * 134.67521 * 180.02562 * 23 22 21 25 25 H 0.96996 * 125.86937 * 0.02562 * 24 23 22 26 26 N 1.28790 * 108.26320 * 180.02562 * 24 23 22 27 27 N 1.28690 * 111.75283 * 359.97438 * 26 24 23 28 28 C 1.34391 * 109.15793 * 359.73724 * 27 26 24 29 29 C 1.43434 * 120.54010 * 172.56815 * 9 7 2 30 30 H 0.97000 * 120.00306 * 173.66020 * 1 2 3 31 31 H 1.09003 * 109.84670 * 229.07541 * 10 9 7 32 32 H 1.09005 * 109.84636 * 349.99197 * 10 9 7 33 33 H 1.08992 * 108.52313 * 179.64771 * 11 10 9 34 34 H 1.08992 * 108.52164 * 297.32809 * 11 10 9 35 35 H 1.09001 * 110.24686 * 29.56772 * 12 11 10 36 36 H 1.08995 * 110.24603 * 151.47610 * 12 11 10 37 37 H 1.09009 * 109.20655 * 218.02864 * 13 12 11 38 38 H 1.08999 * 109.21295 * 337.33997 * 13 12 11 39 39 H 0.97001 * 119.99999 * 24.99789 * 16 14 13 40 40 H 1.07999 * 120.31132 * 359.97438 * 20 19 17 41 41 H 1.07992 * 119.18436 * 180.02562 * 21 20 19 42 42 H 1.09007 * 108.15424 * 33.30548 * 29 9 7 43 43 H 1.08997 * 108.16212 * 149.87211 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2854 2.7464 -0.0006 5 1 3.1041 1.6962 -1.2124 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2023 0.0005 8 1 2.8943 -1.3157 -0.6094 9 7 1.5739 -2.2444 0.7743 10 6 0.4447 -2.0530 1.7456 11 6 -0.7130 -2.7782 1.2239 12 6 -0.4753 -4.2700 1.0125 13 6 0.0458 -4.3962 -0.3897 14 6 1.5914 -4.4893 -0.3961 15 1 1.8927 -5.5132 -0.1745 16 7 2.0951 -4.1134 -1.7195 17 6 3.2892 -4.5740 -2.1418 18 8 3.9481 -5.3015 -1.4250 19 6 3.7974 -4.1951 -3.4778 20 6 3.0602 -3.3631 -4.3198 21 6 3.5712 -3.0304 -5.5647 22 7 4.7381 -3.4800 -5.9744 23 6 5.4840 -4.2718 -5.2230 24 7 6.7050 -4.8785 -5.3769 25 1 7.2789 -4.8112 -6.1560 26 7 6.9582 -5.5527 -4.3092 27 7 6.0096 -5.4519 -3.4453 28 6 5.0451 -4.6575 -3.9401 29 6 2.1839 -3.5380 0.6659 30 1 -0.4850 -0.8349 -0.0928 31 1 0.7234 -2.4530 2.7206 32 1 0.2089 -0.9925 1.8346 33 1 -1.5417 -2.6551 1.9211 34 1 -0.9968 -2.3364 0.2689 35 1 0.2635 -4.6388 1.7241 36 1 -1.4100 -4.8200 1.1209 37 1 -0.3695 -5.2943 -0.8472 38 1 -0.2633 -3.5249 -0.9671 39 1 1.5691 -3.5331 -2.2918 40 1 2.1002 -2.9816 -4.0051 41 1 2.9979 -2.3856 -6.2141 42 1 3.2404 -3.3972 0.4372 43 1 2.1146 -4.0288 1.6366 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034303702.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:51 Heat of formation + Delta-G solvation = 133.229011 kcal Electronic energy + Delta-G solvation = -28927.397528 eV Core-core repulsion = 25011.355407 eV Total energy + Delta-G solvation = -3916.042120 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.52715 -39.96978 -38.89174 -37.87643 -34.59057 -34.27872 -33.40453 -32.24623 -31.09563 -30.93239 -29.90033 -26.34190 -25.57016 -24.29602 -24.01150 -23.32818 -22.61276 -21.06489 -20.27544 -19.44151 -18.84303 -18.46900 -17.48322 -17.12221 -16.73739 -15.93763 -15.46331 -15.24067 -14.96524 -14.54763 -14.46212 -13.84402 -13.68232 -13.59750 -13.28743 -13.01446 -12.73774 -12.46956 -12.42699 -12.18645 -11.90386 -11.78322 -11.61406 -11.10842 -10.91065 -10.62612 -10.44619 -10.22005 -10.16880 -10.05682 -9.85503 -9.77857 -9.51873 -9.44774 -9.44552 -9.22663 -8.77104 -8.19757 -7.00906 -6.22417 -3.06290 -0.07748 0.71344 1.97215 2.07428 2.89175 3.23013 3.46727 3.56023 3.62350 3.68221 3.70990 4.09340 4.29396 4.46120 4.56275 4.63744 5.01942 5.10260 5.15252 5.26346 5.31053 5.35569 5.38223 5.57990 5.67938 5.90313 5.94329 5.97020 6.01757 6.21689 6.30112 6.33521 6.41253 6.55046 6.63801 6.64785 6.82447 6.87950 6.99179 7.19799 7.21405 7.29331 7.80972 7.96337 8.02799 8.47412 8.49190 9.02488 9.80376 10.25559 11.07848 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.012932 B = 0.004136 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.693969 B = 6767.767675 C = 7918.084736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C -0.014 4.014 3 Si 1.033 2.967 4 H -0.288 1.288 5 H -0.295 1.295 6 H -0.296 1.296 7 C -0.351 4.351 8 H 0.063 0.937 9 N -0.586 5.586 10 C 0.129 3.871 11 C -0.135 4.135 12 C -0.111 4.111 13 C -0.111 4.111 14 C 0.115 3.885 15 H 0.079 0.921 16 N -0.692 5.692 17 C 0.546 3.454 18 O -0.514 6.514 19 C -0.001 4.001 20 C -0.140 4.140 21 C 0.165 3.835 22 N -0.465 5.465 23 C 0.213 3.787 24 N -0.409 5.409 25 H 0.456 0.544 26 N -0.005 5.005 27 N -0.206 5.206 28 C 0.002 3.998 29 C 0.152 3.848 30 H 0.273 0.727 31 H 0.024 0.976 32 H 0.095 0.905 33 H 0.040 0.960 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.056 0.944 37 H 0.046 0.954 38 H 0.072 0.928 39 H 0.399 0.601 40 H 0.160 0.840 41 H 0.183 0.817 42 H 0.043 0.957 43 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.191 -7.658 -10.455 13.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.216 4.216 3 Si 0.863 3.137 4 H -0.213 1.213 5 H -0.223 1.223 6 H -0.223 1.223 7 C -0.479 4.479 8 H 0.081 0.919 9 N -0.307 5.307 10 C 0.005 3.995 11 C -0.174 4.174 12 C -0.149 4.149 13 C -0.149 4.149 14 C 0.007 3.993 15 H 0.097 0.903 16 N -0.342 5.342 17 C 0.331 3.669 18 O -0.390 6.390 19 C -0.017 4.017 20 C -0.164 4.164 21 C -0.007 4.007 22 N -0.179 5.179 23 C -0.031 4.031 24 N -0.139 5.139 25 H 0.304 0.696 26 N 0.012 4.988 27 N -0.082 5.082 28 C -0.127 4.127 29 C 0.021 3.979 30 H 0.086 0.914 31 H 0.042 0.958 32 H 0.113 0.887 33 H 0.058 0.942 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.091 0.909 39 H 0.234 0.766 40 H 0.178 0.822 41 H 0.200 0.800 42 H 0.061 0.939 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 3.865 -7.257 -9.840 12.823 hybrid contribution -0.618 -0.764 -0.883 1.322 sum 3.247 -8.021 -10.723 13.779 Atomic orbital electron populations 1.70877 1.07170 1.30618 1.45507 1.25362 0.95761 1.00493 1.00027 0.83994 0.75723 0.77581 0.76391 1.21330 1.22258 1.22329 1.19889 1.09195 0.92461 1.26370 0.91891 1.44371 1.38911 1.05008 1.42407 1.20605 0.86862 1.01587 0.90487 1.21092 0.99412 0.94540 1.02390 1.20942 0.99902 0.97460 0.96547 1.21670 0.93996 1.01219 0.98053 1.22867 0.93669 0.99627 0.83106 0.90338 1.45905 1.19321 1.49912 1.19111 1.17779 0.82234 0.81678 0.85258 1.90834 1.56415 1.36161 1.55543 1.19824 0.90958 0.95454 0.95469 1.22483 1.01840 0.97316 0.94733 1.22847 0.89210 0.94808 0.93884 1.66325 1.06208 1.10140 1.35205 1.19872 0.90173 0.99671 0.93358 1.44653 1.14882 1.36863 1.17475 0.69638 1.78243 1.19790 1.10384 0.90352 1.75560 0.98037 1.14978 1.19661 1.20120 0.97072 1.01623 0.93876 1.20639 0.96329 0.86185 0.94723 0.91353 0.95762 0.88736 0.94156 0.91019 0.91679 0.92560 0.93515 0.90937 0.76604 0.82224 0.80035 0.93914 0.94205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.96 11.99 55.49 0.67 -23.29 16 2 C -0.01 -0.36 4.53 -17.43 -0.08 -0.44 16 3 Si 1.03 23.86 30.06 -169.99 -5.11 18.75 16 4 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.30 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.30 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.35 -8.87 9.46 -15.06 -0.14 -9.01 16 8 H 0.06 1.67 8.05 -52.48 -0.42 1.25 16 9 N -0.59 -13.23 2.62 -175.40 -0.46 -13.69 16 10 C 0.13 2.74 5.22 -5.20 -0.03 2.71 16 11 C -0.14 -2.48 4.96 -30.18 -0.15 -2.62 16 12 C -0.11 -1.72 5.76 -28.40 -0.16 -1.88 16 13 C -0.11 -1.74 5.23 -27.19 -0.14 -1.88 16 14 C 0.11 1.99 2.91 -66.23 -0.19 1.79 16 15 H 0.08 1.38 7.57 -51.93 -0.39 0.98 16 16 N -0.69 -11.36 5.04 -53.09 -0.27 -11.63 16 17 C 0.55 9.72 7.60 -12.32 -0.09 9.62 16 18 O -0.51 -10.92 15.93 5.33 0.08 -10.83 16 19 C 0.00 -0.01 5.92 -104.51 -0.62 -0.63 16 20 C -0.14 -1.59 9.61 -38.99 -0.37 -1.96 16 21 C 0.16 1.61 11.14 -17.52 -0.20 1.42 16 22 N -0.46 -5.48 10.35 -12.38 -0.13 -5.61 16 23 C 0.21 2.83 8.56 -156.21 -1.34 1.49 16 24 N -0.41 -4.53 7.06 31.11 0.22 -4.31 16 25 H 0.46 2.97 8.96 -190.25 -1.71 1.27 16 26 N 0.00 -0.07 13.29 60.35 0.80 0.73 16 27 N -0.21 -3.60 11.92 32.23 0.38 -3.22 16 28 C 0.00 0.03 6.97 -84.72 -0.59 -0.56 16 29 C 0.15 3.09 4.75 -4.93 -0.02 3.06 16 30 H 0.27 7.02 4.95 -40.82 -0.20 6.81 16 31 H 0.02 0.49 8.13 -51.93 -0.42 0.07 16 32 H 0.09 2.31 5.61 -51.93 -0.29 2.01 16 33 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 1.46 4.65 -51.93 -0.24 1.22 16 35 H 0.06 1.03 6.28 -51.93 -0.33 0.70 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.05 0.64 8.14 -51.92 -0.42 0.22 16 38 H 0.07 1.25 6.58 -51.93 -0.34 0.91 16 39 H 0.40 5.89 6.59 -40.82 -0.27 5.62 16 40 H 0.16 1.47 6.53 -52.49 -0.34 1.13 16 41 H 0.18 1.03 8.06 -52.49 -0.42 0.61 16 42 H 0.04 0.98 7.81 -51.93 -0.41 0.57 16 43 H 0.04 0.77 6.89 -51.93 -0.36 0.41 16 LS Contribution 343.28 15.07 5.17 5.17 Total: -1.00 -32.51 343.28 -8.97 -41.48 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -6.21 Total: 5.33 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: -4.13 Total: 1.12 kcal Atomic # 7 Polarization: -62.23 SS G_CDS: 1.22 Total: -61.01 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.08 Total: -10.83 kcal Atomic # 14 Polarization: 23.86 SS G_CDS: -5.11 Total: 18.75 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.51 -8.97 -41.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034303702.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.712 kcal (2) G-P(sol) polarization free energy of solvation -32.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds