Wall clock time and date at job start Tue Mar 31 2020 04:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 120.00455 * 2 1 4 4 H 1.48494 * 109.46784 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47014 * 239.99611 * 3 2 1 6 6 H 1.48496 * 109.47313 * 119.99639 * 3 2 1 7 7 C 1.38819 * 119.99532 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99723 * 139.29933 * 7 2 1 9 9 N 1.36931 * 120.00300 * 319.30052 * 7 2 1 10 10 C 1.50172 * 120.53516 * 352.84705 * 9 7 2 11 11 C 1.46237 * 107.53509 * 109.56592 * 10 9 7 12 12 C 1.52533 * 114.27420 * 58.40495 * 11 10 9 13 13 C 1.50120 * 105.41491 * 270.59638 * 12 11 10 14 14 C 1.54842 * 110.81478 * 97.68551 * 13 12 11 15 15 H 1.09006 * 109.35980 * 81.34092 * 14 13 12 16 16 N 1.46504 * 109.35713 * 200.92560 * 14 13 12 17 17 C 1.34777 * 119.99983 * 205.00095 * 16 14 13 18 18 O 1.21542 * 120.00056 * 0.02562 * 17 16 14 19 19 C 1.47873 * 120.00074 * 179.97438 * 17 16 14 20 20 C 1.39450 * 121.11556 * 359.97438 * 19 17 16 21 21 C 1.38618 * 119.37895 * 179.97438 * 20 19 17 22 22 N 1.31588 * 121.63499 * 359.97438 * 21 20 19 23 23 C 1.32209 * 121.86622 * 0.02562 * 22 21 20 24 24 N 1.37208 * 134.67521 * 180.02562 * 23 22 21 25 25 H 0.96996 * 125.86937 * 0.02562 * 24 23 22 26 26 N 1.28790 * 108.26320 * 180.02562 * 24 23 22 27 27 N 1.28690 * 111.75283 * 359.97438 * 26 24 23 28 28 C 1.34391 * 109.15793 * 359.73724 * 27 26 24 29 29 C 1.43434 * 120.54010 * 172.56815 * 9 7 2 30 30 H 0.97000 * 120.00306 * 173.66020 * 1 2 3 31 31 H 1.09003 * 109.84670 * 229.07541 * 10 9 7 32 32 H 1.09005 * 109.84636 * 349.99197 * 10 9 7 33 33 H 1.08992 * 108.52313 * 179.64771 * 11 10 9 34 34 H 1.08992 * 108.52164 * 297.32809 * 11 10 9 35 35 H 1.09001 * 110.24686 * 29.56772 * 12 11 10 36 36 H 1.08995 * 110.24603 * 151.47610 * 12 11 10 37 37 H 1.09009 * 109.20655 * 218.02864 * 13 12 11 38 38 H 1.08999 * 109.21295 * 337.33997 * 13 12 11 39 39 H 0.97001 * 119.99999 * 24.99789 * 16 14 13 40 40 H 1.07999 * 120.31132 * 359.97438 * 20 19 17 41 41 H 1.07992 * 119.18436 * 180.02562 * 21 20 19 42 42 H 1.09007 * 108.15424 * 33.30548 * 29 9 7 43 43 H 1.08997 * 108.16212 * 149.87211 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2854 2.7464 -0.0006 5 1 3.1041 1.6962 -1.2124 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2023 0.0005 8 1 2.8943 -1.3157 -0.6094 9 7 1.5739 -2.2444 0.7743 10 6 0.4447 -2.0530 1.7456 11 6 -0.7130 -2.7782 1.2239 12 6 -0.4753 -4.2700 1.0125 13 6 0.0458 -4.3962 -0.3897 14 6 1.5914 -4.4893 -0.3961 15 1 1.8927 -5.5132 -0.1745 16 7 2.0951 -4.1134 -1.7195 17 6 3.2892 -4.5740 -2.1418 18 8 3.9481 -5.3015 -1.4250 19 6 3.7974 -4.1951 -3.4778 20 6 3.0602 -3.3631 -4.3198 21 6 3.5712 -3.0304 -5.5647 22 7 4.7381 -3.4800 -5.9744 23 6 5.4840 -4.2718 -5.2230 24 7 6.7050 -4.8785 -5.3769 25 1 7.2789 -4.8112 -6.1560 26 7 6.9582 -5.5527 -4.3092 27 7 6.0096 -5.4519 -3.4453 28 6 5.0451 -4.6575 -3.9401 29 6 2.1839 -3.5380 0.6659 30 1 -0.4850 -0.8349 -0.0928 31 1 0.7234 -2.4530 2.7206 32 1 0.2089 -0.9925 1.8346 33 1 -1.5417 -2.6551 1.9211 34 1 -0.9968 -2.3364 0.2689 35 1 0.2635 -4.6388 1.7241 36 1 -1.4100 -4.8200 1.1209 37 1 -0.3695 -5.2943 -0.8472 38 1 -0.2633 -3.5249 -0.9671 39 1 1.5691 -3.5331 -2.2918 40 1 2.1002 -2.9816 -4.0051 41 1 2.9979 -2.3856 -6.2141 42 1 3.2404 -3.3972 0.4372 43 1 2.1146 -4.0288 1.6366 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034303702.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:50 Heat of formation + Delta-G solvation = 110.114868 kcal Electronic energy + Delta-G solvation = -28928.399832 eV Core-core repulsion = 25011.355407 eV Total energy + Delta-G solvation = -3917.044425 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.56741 -41.26588 -40.07250 -39.31637 -36.14171 -35.37084 -34.94234 -33.45020 -32.78900 -31.95145 -31.35100 -27.91859 -26.83202 -25.69381 -25.00713 -24.78641 -24.01248 -22.42124 -21.68289 -20.94127 -19.95570 -19.58738 -18.97291 -18.55725 -17.78681 -17.28692 -16.68387 -16.66294 -16.26961 -16.00426 -15.76814 -15.52866 -15.16906 -15.09630 -14.35061 -14.27566 -14.03589 -13.93400 -13.70918 -13.54298 -13.43015 -12.84423 -12.74546 -12.71498 -12.50499 -12.42273 -12.13584 -11.91172 -11.72294 -11.52242 -11.36956 -11.24087 -11.13434 -10.66643 -10.46087 -10.36868 -10.25406 -9.96635 -8.82557 -8.21917 -5.02238 -1.11837 -0.24807 0.95006 1.07448 1.60779 1.68009 1.73032 1.86463 1.99547 2.52189 2.66893 2.69772 3.10428 3.18508 3.29579 3.40541 3.49206 3.69001 3.83453 4.04848 4.08871 4.22311 4.30739 4.33790 4.42626 4.47647 4.52436 4.68287 4.72066 4.78143 4.97042 5.10802 5.13996 5.16007 5.19474 5.33158 5.43771 5.52725 5.59839 5.62894 5.66708 5.96800 6.35998 6.49811 6.55638 6.96272 7.14412 7.15331 7.91282 8.37002 9.11162 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.012932 B = 0.004136 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.693969 B = 6767.767675 C = 7918.084736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.047 4.047 3 Si 1.072 2.928 4 H -0.292 1.292 5 H -0.283 1.283 6 H -0.301 1.301 7 C -0.349 4.349 8 H 0.044 0.956 9 N -0.597 5.597 10 C 0.131 3.869 11 C -0.127 4.127 12 C -0.104 4.104 13 C -0.101 4.101 14 C 0.122 3.878 15 H 0.078 0.922 16 N -0.686 5.686 17 C 0.546 3.454 18 O -0.559 6.559 19 C -0.036 4.036 20 C -0.115 4.115 21 C 0.178 3.822 22 N -0.459 5.459 23 C 0.208 3.792 24 N -0.380 5.380 25 H 0.475 0.525 26 N -0.008 5.008 27 N -0.259 5.259 28 C -0.025 4.025 29 C 0.157 3.843 30 H 0.273 0.727 31 H 0.033 0.967 32 H 0.062 0.938 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.064 0.936 36 H 0.087 0.913 37 H 0.075 0.925 38 H 0.058 0.942 39 H 0.407 0.593 40 H 0.184 0.816 41 H 0.235 0.765 42 H 0.007 0.993 43 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.983 -7.508 -12.445 14.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.247 4.247 3 Si 0.901 3.099 4 H -0.219 1.219 5 H -0.209 1.209 6 H -0.229 1.229 7 C -0.478 4.478 8 H 0.062 0.938 9 N -0.319 5.319 10 C 0.008 3.992 11 C -0.166 4.166 12 C -0.141 4.141 13 C -0.139 4.139 14 C 0.014 3.986 15 H 0.096 0.904 16 N -0.336 5.336 17 C 0.331 3.669 18 O -0.437 6.437 19 C -0.052 4.052 20 C -0.138 4.138 21 C 0.005 3.995 22 N -0.173 5.173 23 C -0.035 4.035 24 N -0.114 5.114 25 H 0.327 0.673 26 N 0.009 4.991 27 N -0.134 5.134 28 C -0.155 4.155 29 C 0.028 3.972 30 H 0.086 0.914 31 H 0.051 0.949 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.106 0.894 37 H 0.093 0.907 38 H 0.077 0.923 39 H 0.244 0.756 40 H 0.201 0.799 41 H 0.251 0.749 42 H 0.025 0.975 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.682 -7.128 -11.861 14.096 hybrid contribution -0.209 -0.788 -0.319 0.875 sum 2.473 -7.916 -12.180 14.735 Atomic orbital electron populations 1.70900 1.07544 1.30840 1.47155 1.26047 0.95985 1.02265 1.00435 0.83415 0.74796 0.75215 0.76509 1.21856 1.20923 1.22892 1.19807 1.08192 0.93570 1.26240 0.93844 1.44368 1.39737 1.05372 1.42441 1.20549 0.87684 1.00205 0.90798 1.20928 0.98283 0.96046 1.01373 1.20936 1.01421 0.95507 0.96265 1.21591 0.92109 1.01909 0.98313 1.22634 0.94997 0.98357 0.82563 0.90382 1.45819 1.19135 1.49795 1.18841 1.18220 0.81861 0.80732 0.86040 1.90796 1.57580 1.38219 1.57138 1.19761 0.91986 0.98336 0.95158 1.22876 1.01849 0.94674 0.94439 1.23748 0.88422 0.93748 0.93535 1.66523 1.06655 1.09515 1.34595 1.19961 0.90751 1.00136 0.92650 1.44646 1.14418 1.35084 1.17277 0.67265 1.78131 1.19353 1.10766 0.90866 1.75502 0.99418 1.17107 1.21380 1.20412 0.97475 1.02270 0.95294 1.20578 0.94343 0.86102 0.96214 0.91377 0.94873 0.91952 0.92678 0.92993 0.91749 0.89441 0.90671 0.92325 0.75565 0.79911 0.74906 0.97482 0.93482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.14 11.99 21.65 0.26 -48.88 16 2 C -0.05 -2.46 4.53 84.86 0.38 -2.07 16 3 Si 1.07 48.49 30.06 68.60 2.06 50.56 16 4 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 5 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 6 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 7 C -0.35 -17.86 9.46 84.04 0.80 -17.06 16 8 H 0.04 2.35 8.05 -2.91 -0.02 2.33 16 9 N -0.60 -27.21 2.62 -708.84 -1.86 -29.06 16 10 C 0.13 5.58 5.22 83.58 0.44 6.02 16 11 C -0.13 -4.49 4.96 28.36 0.14 -4.35 16 12 C -0.10 -2.96 5.76 29.51 0.17 -2.79 16 13 C -0.10 -2.95 5.23 30.30 0.16 -2.79 16 14 C 0.12 4.17 2.91 46.09 0.13 4.30 16 15 H 0.08 2.71 7.57 -2.38 -0.02 2.69 16 16 N -0.69 -22.37 5.04 -440.15 -2.22 -24.59 16 17 C 0.55 19.82 7.60 86.79 0.66 20.48 16 18 O -0.56 -24.86 15.93 -3.85 -0.06 -24.93 16 19 C -0.04 -1.10 5.92 -19.79 -0.12 -1.22 16 20 C -0.11 -2.32 9.61 22.65 0.22 -2.10 16 21 C 0.18 2.79 11.14 84.82 0.94 3.73 16 22 N -0.46 -9.43 10.35 -193.10 -2.00 -11.43 16 23 C 0.21 5.26 8.56 134.18 1.15 6.41 16 24 N -0.38 -8.07 7.06 -55.48 -0.39 -8.46 16 25 H 0.48 5.41 8.96 -219.83 -1.97 3.44 16 26 N -0.01 -0.24 13.29 37.02 0.49 0.25 16 27 N -0.26 -9.36 11.92 -51.93 -0.62 -9.98 16 28 C -0.02 -0.80 6.97 40.06 0.28 -0.52 16 29 C 0.16 6.49 4.75 87.42 0.41 6.90 16 30 H 0.27 14.08 4.95 -92.71 -0.46 13.62 16 31 H 0.03 1.32 8.13 -2.39 -0.02 1.31 16 32 H 0.06 3.08 5.61 -2.38 -0.01 3.06 16 33 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.05 2.07 4.65 -2.39 -0.01 2.06 16 35 H 0.06 1.88 6.28 -2.39 -0.01 1.86 16 36 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 38 H 0.06 1.92 6.58 -2.39 -0.02 1.90 16 39 H 0.41 11.62 6.59 -92.71 -0.61 11.01 16 40 H 0.18 2.77 6.53 -2.91 -0.02 2.75 16 41 H 0.23 1.22 8.06 -2.91 -0.02 1.20 16 42 H 0.01 0.33 7.81 -2.38 -0.02 0.31 16 43 H 0.05 1.84 6.89 -2.39 -0.02 1.82 16 Total: -1.00 -74.09 343.28 0.26 -73.83 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: -1.17 Total: 17.76 kcal Atomic # 6 Polarization: 9.17 SS G_CDS: 5.77 Total: 14.94 kcal Atomic # 7 Polarization: -125.82 SS G_CDS: -6.34 Total: -132.15 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: -0.06 Total: -24.93 kcal Atomic # 14 Polarization: 48.49 SS G_CDS: 2.06 Total: 50.56 kcal Total: -74.09 0.26 -73.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034303702.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.944 kcal (2) G-P(sol) polarization free energy of solvation -74.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds