Wall clock time and date at job start Tue Mar 31 2020 05:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34816 * 125.88826 * 2 1 4 4 C 1.36488 * 107.60031 * 180.16151 * 3 2 1 5 5 C 1.48377 * 126.22935 * 179.83940 * 4 3 2 6 6 N 1.31334 * 126.50987 * 324.73855 * 5 4 3 7 7 N 1.39769 * 109.09178 * 179.97438 * 6 5 4 8 8 H 0.97003 * 125.15809 * 179.97438 * 7 6 5 9 9 C 1.34097 * 109.68294 * 359.72206 * 7 6 5 10 10 C 1.38030 * 107.87472 * 0.44496 * 9 7 6 11 11 C 1.47247 * 126.81296 * 179.83463 * 10 9 7 12 12 O 1.21624 * 119.99948 * 179.68872 * 11 10 9 13 13 N 1.34784 * 120.00111 * 359.68443 * 11 10 9 14 14 C 1.46493 * 119.99864 * 179.72822 * 13 11 10 15 15 C 1.53001 * 109.47084 * 180.02562 * 14 13 11 16 16 H 1.08992 * 112.96820 * 53.31557 * 15 14 13 17 17 C 1.53941 * 113.77067 * 184.99979 * 15 14 13 18 18 C 1.53947 * 86.29265 * 137.90671 * 17 15 14 19 19 N 1.47580 * 86.11419 * 336.39216 * 18 17 15 20 20 C 1.36940 * 134.49355 * 204.64613 * 19 18 17 21 21 H 1.07999 * 120.00255 * 179.97438 * 20 19 18 22 22 C 1.38811 * 119.99967 * 359.97438 * 20 19 18 23 23 N 1.31627 * 120.00046 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00311 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47200 * 60.00191 * 24 22 20 26 26 H 1.48500 * 109.47670 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.47319 * 300.00459 * 24 22 20 28 28 C 1.40886 * 107.53695 * 359.57680 * 4 3 2 29 29 N 1.30656 * 108.09879 * 0.26278 * 28 4 3 30 30 H 1.08999 * 109.47032 * 270.28944 * 1 2 3 31 31 H 1.08998 * 109.47014 * 30.28537 * 1 2 3 32 32 H 1.08999 * 109.47578 * 150.28162 * 1 2 3 33 33 H 1.07996 * 126.19926 * 0.02562 * 3 2 1 34 34 H 1.08008 * 126.06291 * 180.27436 * 9 7 6 35 35 H 0.97000 * 119.99339 * 0.02562 * 13 11 10 36 36 H 1.09007 * 109.47196 * 299.99538 * 14 13 11 37 37 H 1.09006 * 109.47678 * 59.99732 * 14 13 11 38 38 H 1.09002 * 113.74364 * 252.24812 * 17 15 14 39 39 H 1.09006 * 113.74517 * 23.45205 * 17 15 14 40 40 H 1.08994 * 113.77068 * 90.69228 * 18 17 15 41 41 H 1.09000 * 113.76912 * 221.98297 * 18 17 15 42 42 H 0.96993 * 119.99842 * 180.02562 * 23 22 20 43 43 H 1.08007 * 125.95132 * 180.27993 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2553 1.0922 0.0000 4 6 3.5513 0.6639 -0.0037 5 6 4.7595 1.5252 -0.0084 6 7 4.8935 2.6800 -0.6194 7 7 6.1783 3.1765 -0.3819 8 1 6.5252 4.0151 -0.7244 9 6 6.8568 2.3202 0.3957 10 6 6.0299 1.2492 0.6685 11 6 6.3569 0.0671 1.4832 12 8 5.5268 -0.8064 1.6482 13 7 7.5763 -0.0472 2.0460 14 6 7.8996 -1.2204 2.8615 15 6 9.3350 -1.1027 3.3779 16 1 9.5253 -0.1623 3.8948 17 6 9.8210 -2.3437 4.1484 18 6 11.1492 -2.1714 3.3893 19 7 10.3589 -1.4496 2.3732 20 6 10.5135 -1.2015 1.0354 21 1 9.7684 -0.6292 0.5026 22 6 11.6279 -1.6854 0.3639 23 7 12.5357 -2.3833 1.0130 24 14 11.8392 -1.3464 -1.4608 25 1 11.8918 0.1200 -1.6890 26 1 13.1012 -1.9675 -1.9369 27 1 10.6921 -1.9226 -2.2075 28 6 3.5328 -0.7448 0.0040 29 7 2.2857 -1.1344 0.0061 30 1 -0.3633 0.0052 1.0276 31 1 -0.3633 0.8874 -0.5183 32 1 -0.3634 -0.8925 -0.5094 33 1 1.9232 2.1198 0.0004 34 1 7.8715 2.4449 0.7442 35 1 8.2382 0.6496 1.9146 36 1 7.2133 -1.2759 3.7065 37 1 7.8037 -2.1216 2.2558 38 1 9.9066 -2.1870 5.2236 39 1 9.2832 -3.2570 3.8936 40 1 11.8740 -1.5447 3.9088 41 1 11.5759 -3.1086 3.0322 42 1 13.3145 -2.7212 0.5439 43 1 4.3988 -1.3903 0.0077 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038904153.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:38 Heat of formation + Delta-G solvation = 177.345436 kcal Electronic energy + Delta-G solvation = -27656.342822 eV Core-core repulsion = 23742.213733 eV Total energy + Delta-G solvation = -3914.129089 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.34047 -40.65813 -38.87902 -37.72450 -34.07078 -33.47127 -32.18020 -32.11077 -30.51811 -29.48836 -27.95115 -27.43093 -26.75921 -23.34865 -23.21522 -22.57002 -21.79645 -20.99260 -19.75051 -19.47315 -19.06312 -18.37863 -16.82456 -16.70680 -16.01496 -15.52605 -15.36434 -15.25706 -14.85934 -14.64183 -14.22674 -14.19142 -13.90029 -13.65610 -13.28910 -12.98411 -12.94729 -12.87410 -12.57388 -12.36768 -11.80790 -11.39868 -11.07487 -11.02154 -10.98197 -10.75085 -10.72273 -10.54878 -10.04931 -9.98801 -9.74834 -9.62882 -9.38356 -9.21602 -8.85406 -8.78542 -8.43938 -8.09658 -6.88147 -5.75477 -3.07728 1.54025 1.60697 2.22030 2.43821 2.69966 3.18629 3.37279 3.43772 3.44418 3.68830 3.81274 4.33960 4.44226 4.59702 4.63739 4.78571 4.94490 5.12652 5.13633 5.19834 5.38970 5.41313 5.48549 5.53584 5.66056 5.67307 5.80502 5.95428 6.02302 6.16693 6.34184 6.40870 6.44225 6.65156 6.74735 6.78546 6.91396 6.99678 7.06292 7.26508 7.43510 7.48938 7.60707 7.77245 7.99613 8.04311 8.73991 9.05372 9.72322 10.61047 11.41336 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.013550 B = 0.003216 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.863472 B = 8705.326430 C = 9416.114046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.381 5.381 3 C 0.086 3.914 4 C -0.172 4.172 5 C 0.217 3.783 6 N -0.300 5.300 7 N -0.468 5.468 8 H 0.442 0.558 9 C 0.109 3.891 10 C -0.277 4.277 11 C 0.590 3.410 12 O -0.546 6.546 13 N -0.713 5.713 14 C 0.126 3.874 15 C 0.126 3.874 16 H 0.048 0.952 17 C -0.156 4.156 18 C 0.159 3.841 19 N -0.602 5.602 20 C -0.218 4.218 21 H 0.079 0.921 22 C -0.007 4.007 23 N -0.921 5.921 24 Si 0.906 3.094 25 H -0.287 1.287 26 H -0.290 1.290 27 H -0.284 1.284 28 C 0.120 3.880 29 N -0.307 5.307 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.176 0.824 34 H 0.188 0.812 35 H 0.397 0.603 36 H 0.060 0.940 37 H 0.073 0.927 38 H 0.052 0.948 39 H 0.077 0.923 40 H 0.026 0.974 41 H 0.073 0.927 42 H 0.253 0.747 43 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.514 11.149 1.185 20.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.161 5.161 3 C -0.064 4.064 4 C -0.186 4.186 5 C 0.047 3.953 6 N -0.122 5.122 7 N -0.173 5.173 8 H 0.286 0.714 9 C -0.042 4.042 10 C -0.292 4.292 11 C 0.377 3.623 12 O -0.426 6.426 13 N -0.362 5.362 14 C 0.002 3.998 15 C 0.019 3.981 16 H 0.066 0.934 17 C -0.195 4.195 18 C 0.033 3.967 19 N -0.329 5.329 20 C -0.345 4.345 21 H 0.096 0.904 22 C -0.204 4.204 23 N -0.568 5.568 24 Si 0.737 3.263 25 H -0.214 1.214 26 H -0.216 1.216 27 H -0.211 1.211 28 C -0.068 4.068 29 N -0.127 5.127 30 H 0.092 0.908 31 H 0.103 0.897 32 H 0.108 0.892 33 H 0.193 0.807 34 H 0.205 0.795 35 H 0.231 0.769 36 H 0.078 0.922 37 H 0.091 0.909 38 H 0.071 0.929 39 H 0.095 0.905 40 H 0.043 0.957 41 H 0.091 0.909 42 H 0.063 0.937 43 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -19.439 10.330 0.269 22.015 hybrid contribution 1.950 1.394 -0.737 2.508 sum -17.489 11.724 -0.469 21.061 Atomic orbital electron populations 1.21821 0.74290 1.04361 1.03288 1.48383 1.06667 1.03964 1.57112 1.22444 0.90423 0.93310 1.00211 1.17619 0.89050 0.92375 1.19594 1.20848 0.91608 0.90571 0.92262 1.77273 0.97312 1.13147 1.24420 1.45846 1.10379 1.20291 1.40750 0.71416 1.23098 0.98218 0.90144 0.92718 1.21374 0.95422 0.99601 1.12849 1.17109 0.81924 0.84716 0.78555 1.90704 1.48104 1.41781 1.61964 1.45786 1.13908 1.24416 1.52112 1.21721 0.96016 0.88242 0.93837 1.22499 0.88687 0.96323 0.90624 0.93436 1.23772 1.00548 0.97855 0.97330 1.22191 0.91056 0.96924 0.86492 1.46055 1.21592 1.62060 1.03151 1.18893 1.04491 1.29073 0.82069 0.90358 1.24747 0.97074 1.00739 0.97814 1.69806 1.11931 1.40205 1.34822 0.86298 0.77199 0.77595 0.85257 1.21386 1.21631 1.21072 1.24300 0.94881 0.93702 0.93937 1.77377 1.01765 1.07398 1.26168 0.90836 0.89660 0.89240 0.80731 0.79512 0.76894 0.92213 0.90876 0.92896 0.90462 0.95661 0.90879 0.93670 0.78535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.71 11.46 59.85 0.69 1.40 16 2 N -0.38 -4.63 4.00 -67.88 -0.27 -4.90 16 3 C 0.09 1.03 11.45 -16.87 -0.19 0.84 16 4 C -0.17 -2.58 5.83 -105.35 -0.61 -3.19 16 5 C 0.22 3.24 7.27 -80.55 -0.59 2.65 16 6 N -0.30 -4.01 12.65 34.58 0.44 -3.57 16 7 N -0.47 -4.79 7.20 30.82 0.22 -4.57 16 8 H 0.44 2.82 8.96 -182.84 -1.64 1.18 16 9 C 0.11 1.21 11.50 -16.64 -0.19 1.02 16 10 C -0.28 -4.09 6.31 -102.96 -0.65 -4.74 16 11 C 0.59 10.00 7.81 -12.60 -0.10 9.91 16 12 O -0.55 -10.59 12.91 5.26 0.07 -10.53 16 13 N -0.71 -11.59 5.52 -61.44 -0.34 -11.93 16 14 C 0.13 2.23 5.54 -4.04 -0.02 2.20 16 15 C 0.13 2.35 4.33 -66.86 -0.29 2.06 16 16 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 17 C -0.16 -2.80 7.86 -25.81 -0.20 -3.00 16 18 C 0.16 3.58 7.51 -2.97 -0.02 3.55 16 19 N -0.60 -14.28 3.57 -170.77 -0.61 -14.89 16 20 C -0.22 -5.69 10.51 -15.06 -0.16 -5.85 16 21 H 0.08 1.95 7.80 -52.49 -0.41 1.54 16 22 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 23 N -0.92 -26.71 11.39 55.49 0.63 -26.08 16 24 Si 0.91 21.74 29.55 -169.99 -5.02 16.72 16 25 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 27 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 28 C 0.12 1.96 10.13 -17.05 -0.17 1.79 16 29 N -0.31 -4.82 12.54 30.81 0.39 -4.43 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.18 1.52 8.06 -52.49 -0.42 1.10 16 34 H 0.19 1.49 7.48 -52.48 -0.39 1.09 16 35 H 0.40 5.88 7.43 -40.82 -0.30 5.57 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.07 1.49 8.14 -51.93 -0.42 1.06 16 38 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.08 1.38 8.10 -51.93 -0.42 0.96 16 40 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.07 1.85 7.16 -51.93 -0.37 1.47 16 42 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 43 H 0.20 3.43 6.34 -52.48 -0.33 3.10 16 LS Contribution 368.43 15.07 5.55 5.55 Total: -1.00 -35.82 368.43 -8.37 -44.18 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -6.81 Total: 6.12 kcal Atomic # 6 Polarization: 10.95 SS G_CDS: -2.61 Total: 8.34 kcal Atomic # 7 Polarization: -70.84 SS G_CDS: 0.46 Total: -70.38 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.07 Total: -10.53 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.82 -8.37 -44.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038904153.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 221.528 kcal (2) G-P(sol) polarization free energy of solvation -35.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 185.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 177.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds