Wall clock time and date at job start Tue Mar 31 2020 05:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34825 * 125.88917 * 2 1 4 4 C 1.36478 * 107.60424 * 180.02562 * 3 2 1 5 5 C 1.48379 * 126.23063 * 179.97438 * 4 3 2 6 6 N 1.31335 * 126.51218 * 325.20544 * 5 4 3 7 7 N 1.39770 * 109.08979 * 180.24041 * 6 5 4 8 8 H 0.97003 * 125.15157 * 179.76018 * 7 6 5 9 9 C 1.34095 * 109.68517 * 359.72556 * 7 6 5 10 10 C 1.38028 * 107.87705 * 359.97438 * 9 7 6 11 11 C 1.47251 * 126.81162 * 179.97438 * 10 9 7 12 12 O 1.21625 * 119.99448 * 180.02562 * 11 10 9 13 13 N 1.34770 * 120.00264 * 0.02608 * 11 10 9 14 14 C 1.46494 * 120.00023 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47165 * 180.02562 * 14 13 11 16 16 H 1.09000 * 112.78141 * 303.72284 * 15 14 13 17 17 C 1.53497 * 113.47057 * 172.94145 * 15 14 13 18 18 C 1.53499 * 83.34857 * 219.15265 * 17 15 14 19 19 N 1.47066 * 87.98161 * 26.06689 * 18 17 15 20 20 C 1.36937 * 136.05751 * 152.91462 * 19 18 17 21 21 H 1.07997 * 120.00071 * 176.10064 * 20 19 18 22 22 C 1.38817 * 119.99920 * 356.10511 * 20 19 18 23 23 N 1.31618 * 119.99987 * 6.72608 * 22 20 19 24 24 Si 1.86798 * 119.99776 * 186.72212 * 22 20 19 25 25 H 1.48501 * 109.47151 * 94.98297 * 24 22 20 26 26 H 1.48509 * 109.46830 * 214.97829 * 24 22 20 27 27 H 1.48500 * 109.47433 * 334.98005 * 24 22 20 28 28 C 1.40889 * 107.54127 * 0.26180 * 4 3 2 29 29 N 1.30664 * 108.09047 * 359.55564 * 28 4 3 30 30 H 1.09001 * 109.46987 * 89.99686 * 1 2 3 31 31 H 1.08997 * 109.46948 * 209.99876 * 1 2 3 32 32 H 1.08999 * 109.47122 * 330.00196 * 1 2 3 33 33 H 1.07997 * 126.19753 * 0.05978 * 3 2 1 34 34 H 1.08001 * 126.05705 * 180.02562 * 9 7 6 35 35 H 0.97004 * 119.99738 * 0.02562 * 13 11 10 36 36 H 1.09005 * 109.47100 * 60.00306 * 14 13 11 37 37 H 1.09006 * 109.47537 * 300.00205 * 14 13 11 38 38 H 1.09005 * 114.20802 * 332.74056 * 17 15 14 39 39 H 1.08999 * 114.20887 * 105.56283 * 17 15 14 40 40 H 1.08997 * 113.46280 * 271.28830 * 18 17 15 41 41 H 1.08996 * 113.46573 * 140.84631 * 18 17 15 42 42 H 0.96993 * 120.00455 * 180.02562 * 23 22 20 43 43 H 1.07997 * 125.95439 * 179.73841 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2554 1.0923 0.0000 4 6 3.5512 0.6641 -0.0006 5 6 4.7595 1.5254 -0.0013 6 7 4.8923 2.6848 -0.6039 7 7 6.1796 3.1765 -0.3704 8 1 6.5271 4.0158 -0.7108 9 6 6.8610 2.3126 0.3961 10 6 6.0299 1.2462 0.6743 11 6 6.3573 0.0601 1.4830 12 8 5.5251 -0.8114 1.6488 13 7 7.5788 -0.0600 2.0396 14 6 7.9042 -1.2398 2.8447 15 6 9.3420 -1.1278 3.3556 16 1 10.0667 -0.9980 2.5518 17 6 9.7247 -2.2317 4.3511 18 6 10.4618 -1.0881 5.0617 19 7 9.5009 -0.1580 4.4497 20 6 8.9828 1.0707 4.7611 21 1 8.3137 1.5649 4.0724 22 6 9.3177 1.6811 5.9621 23 7 10.2330 1.1439 6.7406 24 14 8.4694 3.2649 6.4732 25 1 7.3227 2.9478 7.3619 26 1 9.4333 4.1308 7.1988 27 1 7.9778 3.9753 5.2653 28 6 3.5330 -0.7447 -0.0071 29 7 2.2858 -1.1343 -0.0006 30 1 -0.3633 0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 1.9232 2.1199 0.0009 34 1 7.8793 2.4307 0.7361 35 1 8.2423 0.6353 1.9076 36 1 7.8046 -2.1362 2.2325 37 1 7.2215 -1.3010 3.6923 38 1 8.8836 -2.6384 4.9127 39 1 10.3808 -2.9980 3.9384 40 1 11.4847 -0.9477 4.7122 41 1 10.3896 -1.1341 6.1483 42 1 10.4668 1.5701 7.5799 43 1 4.3989 -1.3900 -0.0131 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038904159.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:41 Heat of formation + Delta-G solvation = 180.563163 kcal Electronic energy + Delta-G solvation = -27703.618672 eV Core-core repulsion = 23789.629114 eV Total energy + Delta-G solvation = -3913.989558 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.33307 -40.65063 -38.93685 -37.86634 -34.05543 -33.46296 -32.23356 -32.10465 -30.50606 -29.48141 -28.03018 -27.39806 -26.74874 -23.47502 -23.15124 -22.56011 -21.70411 -20.98375 -19.74161 -19.48435 -19.14036 -18.38454 -16.82320 -16.72209 -16.02437 -15.50895 -15.34480 -15.27348 -14.85507 -14.64276 -14.23452 -14.13854 -13.89583 -13.66201 -13.33169 -13.02643 -12.85940 -12.81549 -12.60559 -12.38045 -11.82572 -11.49040 -11.16276 -11.00521 -10.96919 -10.77659 -10.75755 -10.56312 -10.04017 -9.98336 -9.82529 -9.61790 -9.33881 -9.16051 -8.83855 -8.76742 -8.42392 -8.08571 -6.91517 -5.79291 -3.10399 1.55370 1.62292 2.21669 2.44289 2.71246 3.18307 3.35615 3.41105 3.43658 3.68626 3.84889 4.35377 4.41994 4.60098 4.66072 4.80878 4.95584 5.13820 5.19398 5.21427 5.38515 5.41463 5.47669 5.52348 5.61409 5.67464 5.81387 5.94097 6.02081 6.17148 6.34894 6.40117 6.44388 6.61533 6.73527 6.77150 6.91832 7.00336 7.07506 7.22115 7.41688 7.50008 7.56584 7.76549 7.96118 8.06042 8.75392 9.01119 9.68897 10.62428 11.38343 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.012768 B = 0.003299 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2192.531661 B = 8485.461430 C = 9142.835590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.380 5.380 3 C 0.087 3.913 4 C -0.172 4.172 5 C 0.216 3.784 6 N -0.300 5.300 7 N -0.468 5.468 8 H 0.442 0.558 9 C 0.109 3.891 10 C -0.277 4.277 11 C 0.589 3.411 12 O -0.547 6.547 13 N -0.712 5.712 14 C 0.125 3.875 15 C 0.128 3.872 16 H 0.048 0.952 17 C -0.161 4.161 18 C 0.150 3.850 19 N -0.602 5.602 20 C -0.212 4.212 21 H 0.080 0.920 22 C -0.006 4.006 23 N -0.917 5.917 24 Si 0.907 3.093 25 H -0.289 1.289 26 H -0.292 1.292 27 H -0.282 1.282 28 C 0.119 3.881 29 N -0.308 5.308 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.176 0.824 34 H 0.188 0.812 35 H 0.398 0.602 36 H 0.060 0.940 37 H 0.071 0.929 38 H 0.080 0.920 39 H 0.058 0.942 40 H 0.024 0.976 41 H 0.071 0.929 42 H 0.253 0.747 43 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.662 0.811 -15.690 18.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.161 5.161 3 C -0.063 4.063 4 C -0.186 4.186 5 C 0.047 3.953 6 N -0.122 5.122 7 N -0.173 5.173 8 H 0.286 0.714 9 C -0.041 4.041 10 C -0.292 4.292 11 C 0.377 3.623 12 O -0.426 6.426 13 N -0.362 5.362 14 C 0.000 4.000 15 C 0.020 3.980 16 H 0.065 0.935 17 C -0.200 4.200 18 C 0.025 3.975 19 N -0.328 5.328 20 C -0.340 4.340 21 H 0.098 0.902 22 C -0.203 4.203 23 N -0.564 5.564 24 Si 0.737 3.263 25 H -0.216 1.216 26 H -0.218 1.218 27 H -0.208 1.208 28 C -0.069 4.069 29 N -0.128 5.128 30 H 0.092 0.908 31 H 0.108 0.892 32 H 0.104 0.896 33 H 0.193 0.807 34 H 0.205 0.795 35 H 0.232 0.768 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.098 0.902 39 H 0.076 0.924 40 H 0.042 0.958 41 H 0.089 0.911 42 H 0.063 0.937 43 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -12.820 0.359 -16.053 20.547 hybrid contribution 1.305 2.152 0.741 2.623 sum -11.516 2.511 -15.312 19.323 Atomic orbital electron populations 1.21827 0.74244 1.04502 1.03189 1.48363 1.06674 1.03922 1.57102 1.22467 0.90444 0.93350 1.00026 1.17611 0.89064 0.92372 1.19536 1.20849 0.91606 0.90526 0.92339 1.77268 0.97187 1.12886 1.24840 1.45843 1.10061 1.20004 1.41361 0.71420 1.23100 0.98472 0.89962 0.92596 1.21376 0.95317 0.99890 1.12656 1.17108 0.81912 0.84724 0.78584 1.90705 1.47667 1.42146 1.62088 1.45785 1.14033 1.24292 1.52044 1.21761 0.97640 0.86450 0.94114 1.22414 0.92892 0.90417 0.92280 0.93519 1.23645 1.00977 0.96219 0.99165 1.22049 0.91490 0.84669 0.99333 1.45703 1.47493 1.18161 1.21400 1.18838 1.21493 0.92331 1.01291 0.90206 1.24765 0.99084 0.99092 0.97367 1.69834 1.32784 1.40727 1.13063 0.86194 0.78804 0.82768 0.78499 1.21587 1.21822 1.20774 1.24215 0.94834 0.93603 0.94242 1.77347 1.01741 1.07522 1.26150 0.90837 0.89220 0.89628 0.80699 0.79515 0.76840 0.92209 0.91092 0.90178 0.92359 0.95807 0.91092 0.93703 0.78714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.74 11.46 59.85 0.69 1.43 16 2 N -0.38 -4.69 4.00 -67.88 -0.27 -4.97 16 3 C 0.09 1.08 11.45 -16.87 -0.19 0.89 16 4 C -0.17 -2.59 5.82 -105.35 -0.61 -3.20 16 5 C 0.22 3.26 7.27 -80.54 -0.59 2.67 16 6 N -0.30 -4.06 12.65 34.59 0.44 -3.62 16 7 N -0.47 -4.89 7.20 30.82 0.22 -4.67 16 8 H 0.44 2.92 8.96 -182.84 -1.64 1.28 16 9 C 0.11 1.24 11.50 -16.64 -0.19 1.05 16 10 C -0.28 -4.14 6.31 -102.95 -0.65 -4.79 16 11 C 0.59 10.09 7.81 -12.60 -0.10 9.99 16 12 O -0.55 -10.66 12.95 5.26 0.07 -10.59 16 13 N -0.71 -11.72 5.35 -61.44 -0.33 -12.05 16 14 C 0.12 2.20 5.52 -4.05 -0.02 2.18 16 15 C 0.13 2.37 4.10 -72.38 -0.30 2.08 16 16 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 17 C -0.16 -2.88 8.03 -26.22 -0.21 -3.09 16 18 C 0.15 3.37 7.42 -8.49 -0.06 3.31 16 19 N -0.60 -14.25 3.65 -176.96 -0.65 -14.90 16 20 C -0.21 -5.54 10.54 -15.06 -0.16 -5.70 16 21 H 0.08 1.98 7.49 -52.49 -0.39 1.59 16 22 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 23 N -0.92 -26.59 11.53 55.49 0.64 -25.95 16 24 Si 0.91 21.75 29.56 -169.99 -5.02 16.73 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 26 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 27 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 28 C 0.12 1.89 10.13 -17.05 -0.17 1.72 16 29 N -0.31 -4.76 12.54 30.81 0.39 -4.37 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.18 1.64 8.06 -52.49 -0.42 1.21 16 34 H 0.19 1.56 7.48 -52.49 -0.39 1.17 16 35 H 0.40 6.03 7.27 -40.82 -0.30 5.73 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 38 H 0.08 1.44 8.12 -51.93 -0.42 1.02 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.07 1.79 7.11 -51.93 -0.37 1.43 16 42 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 43 H 0.20 3.14 6.39 -52.49 -0.34 2.81 16 LS Contribution 367.94 15.07 5.54 5.54 Total: -1.00 -35.81 367.94 -8.43 -44.24 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -6.79 Total: 6.33 kcal Atomic # 6 Polarization: 10.95 SS G_CDS: -2.67 Total: 8.28 kcal Atomic # 7 Polarization: -70.97 SS G_CDS: 0.44 Total: -70.53 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.07 Total: -10.59 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.81 -8.43 -44.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038904159.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 224.799 kcal (2) G-P(sol) polarization free energy of solvation -35.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 188.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 180.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds