Wall clock time and date at job start Tue Mar 31 2020 04:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.40175 * 119.82070 * 2 1 4 4 C 1.35680 * 119.27546 * 179.97438 * 3 2 1 5 5 C 1.50693 * 120.49007 * 179.97438 * 4 3 2 6 6 N 1.36170 * 119.02675 * 0.02562 * 4 3 2 7 7 N 1.40100 * 133.23212 * 179.97438 * 6 4 3 8 8 C 1.31990 * 106.92929 * 180.02562 * 7 6 4 9 9 C 1.48129 * 125.32248 * 180.02562 * 8 7 6 10 10 O 1.21516 * 120.00325 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99792 * 180.02562 * 9 8 7 12 12 C 1.46499 * 120.00077 * 179.97438 * 11 9 8 13 13 C 1.53005 * 109.46980 * 179.97438 * 12 11 9 14 14 H 1.08994 * 112.74053 * 303.76149 * 13 12 11 15 15 C 1.53501 * 113.46467 * 172.94260 * 13 12 11 16 16 C 1.53500 * 83.34004 * 219.15325 * 15 13 12 17 17 N 1.47066 * 87.98802 * 26.06865 * 16 15 13 18 18 C 1.36938 * 136.05784 * 152.91534 * 17 16 15 19 19 H 1.07997 * 119.99793 * 176.10321 * 18 17 16 20 20 C 1.38809 * 120.00104 * 356.10080 * 18 17 16 21 21 N 1.31625 * 119.99959 * 6.72567 * 20 18 17 22 22 Si 1.86797 * 120.00084 * 186.72282 * 20 18 17 23 23 H 1.48507 * 109.46731 * 94.98419 * 22 20 18 24 24 H 1.48504 * 109.47078 * 214.98166 * 22 20 18 25 25 H 1.48498 * 109.47150 * 334.98317 * 22 20 18 26 26 N 1.33460 * 109.35024 * 359.97438 * 8 7 6 27 27 C 1.32497 * 109.75663 * 359.97438 * 26 8 7 28 28 N 1.31255 * 119.82354 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.47197 * 90.00238 * 1 2 3 30 30 H 1.09003 * 109.47287 * 210.00416 * 1 2 3 31 31 H 1.09000 * 109.47484 * 330.00146 * 1 2 3 32 32 H 1.08003 * 120.36330 * 359.69769 * 3 2 1 33 33 H 1.09004 * 109.47085 * 90.00211 * 5 4 3 34 34 H 1.08996 * 109.47548 * 210.00317 * 5 4 3 35 35 H 1.09001 * 109.47152 * 330.00951 * 5 4 3 36 36 H 0.97002 * 120.00129 * 359.97438 * 11 9 8 37 37 H 1.08998 * 109.47328 * 299.99869 * 12 11 9 38 38 H 1.09001 * 109.46805 * 59.99699 * 12 11 9 39 39 H 1.09004 * 114.20607 * 332.74093 * 15 13 12 40 40 H 1.08999 * 114.20608 * 105.56810 * 15 13 12 41 41 H 1.08994 * 113.46867 * 271.28335 * 16 15 13 42 42 H 1.09005 * 113.46764 * 140.84930 * 16 15 13 43 43 H 0.96994 * 120.00198 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2040 1.2161 0.0000 4 6 3.5607 1.2032 0.0005 5 6 4.3377 2.4944 0.0000 6 7 4.2101 0.0063 0.0005 7 7 5.5649 -0.3504 0.0005 8 6 5.6151 -1.6693 -0.0001 9 6 6.8554 -2.4792 0.0003 10 8 7.9395 -1.9303 0.0016 11 7 6.7814 -3.8249 -0.0009 12 6 8.0080 -4.6260 -0.0012 13 6 7.6463 -6.1126 -0.0019 14 1 7.0037 -6.3903 0.8335 15 6 8.8595 -7.0369 -0.1753 16 6 7.8936 -7.8446 -1.0532 17 7 7.1578 -6.5958 -1.3023 18 6 6.3657 -6.1011 -2.3038 19 1 5.8894 -5.1385 -2.1898 20 6 6.1751 -6.8366 -3.4654 21 7 6.6447 -8.0632 -3.5522 22 14 5.2520 -6.0859 -4.9054 23 1 6.2226 -5.4941 -5.8610 24 1 4.4624 -7.1403 -5.5911 25 1 4.3374 -5.0266 -4.4090 26 7 4.3736 -2.1591 0.0001 27 6 3.4994 -1.1635 0.0014 28 7 2.1597 -1.1387 0.0005 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 1.6670 2.1532 -0.0049 33 1 4.5246 2.8064 1.0275 34 1 5.2877 2.3467 -0.5134 35 1 3.7625 3.2643 -0.5145 36 1 5.9160 -4.2631 -0.0016 37 1 8.5935 -4.3937 -0.8907 38 1 8.5929 -4.3951 0.8892 39 1 9.6895 -6.5873 -0.7205 40 1 9.1667 -7.5471 0.7376 41 1 7.3175 -8.5845 -0.4976 42 1 8.3616 -8.2582 -1.9466 43 1 6.5112 -8.5773 -4.3638 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038993386.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:43 Heat of formation + Delta-G solvation = 161.941141 kcal Electronic energy + Delta-G solvation = -27576.309757 eV Core-core repulsion = 23661.512688 eV Total energy + Delta-G solvation = -3914.797069 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.15661 -39.85151 -38.88532 -37.96719 -35.75155 -34.20056 -32.73210 -32.16578 -31.66584 -29.45002 -28.50488 -28.07880 -27.75145 -24.91895 -23.42506 -23.27903 -22.19787 -21.60967 -20.26990 -19.25511 -18.73009 -18.31681 -17.31169 -17.04592 -16.45759 -15.60284 -15.37850 -15.30131 -14.70754 -14.60507 -14.25621 -14.19747 -13.97265 -13.70643 -13.60430 -13.23739 -13.06496 -12.94643 -12.89797 -12.65409 -12.19746 -11.93987 -11.73574 -11.46799 -11.12412 -10.97216 -10.72268 -10.54726 -10.46834 -10.32368 -10.19713 -9.87529 -9.83673 -9.77337 -9.27443 -9.01829 -8.71779 -8.64588 -6.86247 -5.72659 -3.03912 0.02779 0.33432 1.47146 1.71014 2.78706 2.92465 3.12742 3.43609 3.45815 3.49095 3.51143 3.61634 3.89284 4.20551 4.46469 4.51548 4.66717 4.74613 4.75957 4.87125 5.06308 5.10595 5.19693 5.23593 5.42333 5.44412 5.58302 5.63406 5.70589 5.75786 5.82401 5.93967 5.94523 6.07933 6.32158 6.41427 6.61440 6.67968 6.80734 7.13757 7.26898 7.43607 7.48580 7.62561 7.83814 8.02828 8.32659 9.08699 9.75584 10.66876 11.44833 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.012455 B = 0.003371 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2247.611086 B = 8304.485003 C = 9595.899505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.233 3.767 3 C -0.226 4.226 4 C 0.205 3.795 5 C -0.123 4.123 6 N -0.332 5.332 7 N -0.272 5.272 8 C 0.248 3.752 9 C 0.605 3.395 10 O -0.519 6.519 11 N -0.681 5.681 12 C 0.121 3.879 13 C 0.127 3.873 14 H 0.051 0.949 15 C -0.159 4.159 16 C 0.150 3.850 17 N -0.601 5.601 18 C -0.213 4.213 19 H 0.081 0.919 20 C -0.004 4.004 21 N -0.918 5.918 22 Si 0.905 3.095 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.280 1.280 26 N -0.494 5.494 27 C 0.452 3.548 28 N -0.455 5.455 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.174 0.826 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.417 0.583 37 H 0.078 0.922 38 H 0.066 0.934 39 H 0.080 0.920 40 H 0.059 0.941 41 H 0.025 0.975 42 H 0.072 0.928 43 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.161 20.483 10.389 25.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.067 3.933 3 C -0.251 4.251 4 C 0.088 3.912 5 C -0.180 4.180 6 N -0.114 5.114 7 N -0.106 5.106 8 C -0.036 4.036 9 C 0.384 3.616 10 O -0.392 6.392 11 N -0.332 5.332 12 C -0.003 4.003 13 C 0.019 3.981 14 H 0.069 0.931 15 C -0.198 4.198 16 C 0.025 3.975 17 N -0.326 5.326 18 C -0.340 4.340 19 H 0.099 0.901 20 C -0.201 4.201 21 N -0.565 5.565 22 Si 0.736 3.264 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.206 1.206 26 N -0.228 5.228 27 C 0.091 3.909 28 N -0.172 5.172 29 H 0.114 0.886 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.191 0.809 33 H 0.115 0.885 34 H 0.111 0.889 35 H 0.117 0.883 36 H 0.253 0.747 37 H 0.096 0.904 38 H 0.085 0.915 39 H 0.099 0.901 40 H 0.078 0.922 41 H 0.043 0.957 42 H 0.090 0.910 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -9.083 19.881 10.046 24.056 hybrid contribution -0.988 0.918 -0.875 1.608 sum -10.072 20.799 9.171 24.863 Atomic orbital electron populations 1.20894 0.86084 1.04951 1.04634 1.22078 0.98180 0.86773 0.86257 1.21634 0.91329 1.01435 1.10695 1.20901 0.92067 0.86516 0.91725 1.21083 1.01233 0.90642 1.05027 1.49065 1.07545 1.07973 1.46825 1.78851 0.88834 1.13350 1.29546 1.24373 0.93272 0.89539 0.96410 1.16325 0.84296 0.82380 0.78621 1.90814 1.26695 1.71680 1.50050 1.45776 1.12305 1.04162 1.70963 1.22024 0.85360 0.91039 1.01912 1.22449 0.94244 0.90440 0.91002 0.93147 1.23653 0.96911 0.99276 0.99977 1.22054 0.89658 0.89541 0.96253 1.45754 1.58075 1.14195 1.14612 1.18898 1.21707 1.01224 0.92155 0.90119 1.24735 1.01166 0.96181 0.98019 1.69840 1.50575 1.08814 1.27250 0.86193 0.79163 0.78104 0.82970 1.21640 1.21689 1.20595 1.70916 0.97665 1.26732 1.27444 1.22658 0.90140 0.81591 0.96517 1.67896 1.01659 1.28886 1.18746 0.88604 0.89042 0.89199 0.80863 0.88451 0.88932 0.88339 0.74652 0.90379 0.91546 0.90103 0.92214 0.95705 0.90970 0.93750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.47 10.19 36.00 0.37 -0.10 16 2 C 0.23 2.04 6.83 -82.11 -0.56 1.47 16 3 C -0.23 -1.47 9.39 -39.77 -0.37 -1.84 16 4 C 0.21 1.93 6.86 -81.59 -0.56 1.37 16 5 C -0.12 -0.71 10.13 36.00 0.36 -0.35 16 6 N -0.33 -4.89 3.91 -10.07 -0.04 -4.92 16 7 N -0.27 -4.80 12.67 32.02 0.41 -4.39 16 8 C 0.25 4.75 7.92 -156.79 -1.24 3.51 16 9 C 0.60 12.05 7.84 -12.20 -0.10 11.96 16 10 O -0.52 -11.24 17.07 5.35 0.09 -11.15 16 11 N -0.68 -13.15 5.36 -61.16 -0.33 -13.48 16 12 C 0.12 2.26 5.52 -4.04 -0.02 2.24 16 13 C 0.13 2.51 4.10 -72.39 -0.30 2.21 16 14 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 15 C -0.16 -2.92 8.03 -26.21 -0.21 -3.13 16 16 C 0.15 3.50 7.42 -8.51 -0.06 3.44 16 17 N -0.60 -15.08 3.65 -177.00 -0.65 -15.73 16 18 C -0.21 -5.95 10.54 -15.06 -0.16 -6.11 16 19 H 0.08 2.24 7.49 -52.49 -0.39 1.84 16 20 C 0.00 -0.13 5.50 -17.43 -0.10 -0.22 16 21 N -0.92 -27.57 11.53 55.49 0.64 -26.93 16 22 Si 0.91 23.10 29.56 -169.99 -5.02 18.07 16 23 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 24 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 25 H -0.28 -7.11 7.11 56.52 0.40 -6.70 16 26 N -0.49 -9.46 10.89 -12.23 -0.13 -9.59 16 27 C 0.45 7.54 8.99 -323.03 -2.90 4.64 16 28 N -0.46 -6.38 10.40 -10.01 -0.10 -6.49 16 29 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.09 0.11 8.09 -51.93 -0.42 -0.31 16 32 H 0.17 0.29 8.06 -52.48 -0.42 -0.14 16 33 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.10 0.24 8.09 -51.93 -0.42 -0.18 16 36 H 0.42 8.22 7.99 -40.82 -0.33 7.89 16 37 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 38 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.08 1.46 8.12 -51.93 -0.42 1.04 16 40 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.07 1.87 7.11 -51.93 -0.37 1.50 16 43 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 372.12 15.07 5.61 5.61 Total: -1.00 -37.48 372.12 -11.09 -48.57 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -5.71 Total: 1.35 kcal Atomic # 6 Polarization: 24.92 SS G_CDS: -5.85 Total: 19.07 kcal Atomic # 7 Polarization: -81.33 SS G_CDS: -0.21 Total: -81.53 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.09 Total: -11.15 kcal Atomic # 14 Polarization: 23.10 SS G_CDS: -5.02 Total: 18.07 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -37.48 -11.09 -48.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038993386.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 210.513 kcal (2) G-P(sol) polarization free energy of solvation -37.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 173.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 161.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds