Wall clock time and date at job start Tue Mar 31 2020 05:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34784 * 119.99675 * 2 1 4 4 O 1.21620 * 119.99569 * 185.77505 * 3 2 1 5 5 C 1.47237 * 119.99786 * 5.77392 * 3 2 1 6 6 C 1.38035 * 126.81973 * 327.53061 * 5 3 2 7 7 N 1.34102 * 107.87906 * 180.02562 * 6 5 3 8 8 H 0.96995 * 125.15889 * 180.02562 * 7 6 5 9 9 N 1.39773 * 109.67935 * 359.75349 * 7 6 5 10 10 C 1.31340 * 109.09642 * 0.42732 * 9 7 6 11 11 C 1.48372 * 126.50914 * 179.85423 * 10 9 7 12 12 C 1.40886 * 126.22765 * 144.66928 * 11 10 9 13 13 N 1.30667 * 108.09287 * 180.02562 * 12 11 10 14 14 N 1.40006 * 108.53730 * 359.97438 * 13 12 11 15 15 C 1.46504 * 125.88779 * 179.73135 * 14 13 12 16 16 C 1.34818 * 108.22829 * 359.97438 * 14 13 12 17 17 C 1.46495 * 120.00395 * 180.02562 * 2 1 3 18 18 C 1.53948 * 113.74059 * 38.73526 * 17 2 1 19 19 N 1.47813 * 86.03785 * 222.08894 * 18 17 2 20 20 C 1.36941 * 134.45780 * 204.64961 * 19 18 17 21 21 H 1.07998 * 119.99803 * 179.86554 * 20 19 18 22 22 C 1.38810 * 119.99725 * 359.86273 * 20 19 18 23 23 N 1.31614 * 120.00215 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 119.99538 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.47072 * 89.99989 * 24 22 20 26 26 H 1.48502 * 109.46666 * 210.00013 * 24 22 20 27 27 H 1.48496 * 109.47078 * 329.99489 * 24 22 20 28 28 C 1.47582 * 91.05126 * 24.54993 * 19 18 17 29 29 H 1.09003 * 109.47010 * 94.76890 * 1 2 3 30 30 H 1.09001 * 109.46647 * 214.76717 * 1 2 3 31 31 H 1.08996 * 109.47183 * 334.76488 * 1 2 3 32 32 H 1.07993 * 126.06017 * 359.97438 * 6 5 3 33 33 H 1.07995 * 125.95638 * 359.97438 * 12 11 10 34 34 H 1.09000 * 109.47037 * 90.02477 * 15 14 13 35 35 H 1.08996 * 109.47409 * 210.02557 * 15 14 13 36 36 H 1.08997 * 109.47214 * 330.02727 * 15 14 13 37 37 H 1.08003 * 126.20164 * 179.97438 * 16 14 13 38 38 H 1.08995 * 112.95000 * 170.32879 * 17 2 1 39 39 H 1.08997 * 113.77248 * 336.35073 * 18 17 2 40 40 H 1.09004 * 113.76788 * 107.75003 * 18 17 2 41 41 H 0.97001 * 119.99886 * 180.02562 * 23 22 20 42 42 H 1.08997 * 113.76763 * 221.15264 * 28 19 18 43 43 H 1.09000 * 113.76666 * 89.75216 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3504 1.1700 -0.1060 5 6 1.4082 2.4391 0.1283 6 6 0.1407 2.7161 -0.3430 7 7 -0.1510 3.9843 -0.0189 8 1 -0.9821 4.4377 -0.2299 9 7 0.9219 4.5516 0.6744 10 6 1.8827 3.6626 0.7812 11 6 3.1964 3.8578 1.4428 12 6 3.9143 2.8884 2.1706 13 7 5.0203 3.4380 2.5972 14 7 5.0528 4.7684 2.1622 15 6 6.1206 5.7344 2.4324 16 6 3.9297 5.0088 1.4564 17 6 2.1976 -1.2686 -0.0006 18 6 1.5556 -2.3547 -0.8828 19 7 1.8611 -3.2880 0.2219 20 6 2.0640 -4.6396 0.3072 21 1 2.2810 -5.0937 1.2627 22 6 1.9907 -5.4258 -0.8344 23 7 1.7267 -4.8721 -1.9989 24 14 2.2668 -7.2696 -0.7179 25 1 0.9706 -7.9494 -0.4674 26 1 2.8473 -7.7646 -1.9919 27 1 3.2022 -7.5605 0.3982 28 6 1.8622 -2.1785 1.1951 29 1 -0.3633 -0.0854 -1.0241 30 1 -0.3633 -0.8442 0.5860 31 1 -0.3633 0.9296 0.4381 32 1 -0.5018 2.0330 -0.8785 33 1 3.6042 1.8689 2.3461 34 1 6.8673 5.6816 1.6402 35 1 5.7005 6.7395 2.4694 36 1 6.5885 5.5008 3.3888 37 1 3.6585 5.9434 0.9880 38 1 3.2669 -1.1418 -0.1691 39 1 0.4888 -2.2090 -1.0525 40 1 2.1091 -2.5603 -1.7991 41 1 1.6751 -5.4216 -2.7966 42 1 2.6600 -2.2438 1.9349 43 1 0.8856 -1.9809 1.6371 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044166579.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:35 Heat of formation + Delta-G solvation = 199.578226 kcal Electronic energy + Delta-G solvation = -27812.454577 eV Core-core repulsion = 23899.289575 eV Total energy + Delta-G solvation = -3913.165003 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.47442 -40.81358 -39.29105 -37.32909 -34.47127 -33.64525 -32.20742 -32.03224 -30.29637 -29.58030 -27.55634 -26.93543 -26.70536 -24.76833 -23.86078 -22.65356 -22.11714 -21.02960 -20.06374 -19.46759 -18.71778 -17.59159 -16.88541 -16.81732 -16.36278 -15.58719 -15.54318 -15.29636 -14.78730 -14.68688 -14.37753 -14.32922 -13.78029 -13.57290 -13.22376 -13.05802 -12.87174 -12.80990 -12.50117 -12.37802 -11.90898 -11.65203 -11.48792 -11.25078 -11.05192 -10.86670 -10.85228 -10.65975 -10.21314 -10.09805 -10.03571 -9.54115 -9.50120 -9.41056 -8.82291 -8.78205 -8.20335 -8.02017 -6.88286 -5.76541 -3.08972 1.46360 1.59987 2.11514 2.35535 2.61415 3.03377 3.35878 3.42013 3.46412 3.48093 3.61167 4.25764 4.48126 4.51526 4.56203 4.71988 4.91457 5.02802 5.09190 5.16823 5.26314 5.30887 5.33037 5.42684 5.49222 5.53821 5.57277 5.80018 5.87148 5.89462 6.14799 6.20774 6.32216 6.49406 6.58207 6.63830 6.83453 6.86827 6.98589 7.23272 7.38584 7.44725 7.55946 7.65130 7.88507 7.97934 8.64087 9.04800 9.70906 10.58376 11.40698 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.017210 B = 0.002850 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.566550 B = 9820.806349 C =11071.226733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.596 5.596 3 C 0.586 3.414 4 O -0.535 6.535 5 C -0.270 4.270 6 C 0.096 3.904 7 N -0.471 5.471 8 H 0.441 0.559 9 N -0.298 5.298 10 C 0.214 3.786 11 C -0.169 4.169 12 C 0.107 3.893 13 N -0.297 5.297 14 N -0.377 5.377 15 C 0.103 3.897 16 C 0.089 3.911 17 C 0.094 3.906 18 C 0.157 3.843 19 N -0.607 5.607 20 C -0.221 4.221 21 H 0.081 0.919 22 C -0.007 4.007 23 N -0.921 5.921 24 Si 0.913 3.087 25 H -0.289 1.289 26 H -0.290 1.290 27 H -0.280 1.280 28 C 0.108 3.892 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.193 0.807 33 H 0.185 0.815 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.177 0.823 38 H 0.117 0.883 39 H 0.031 0.969 40 H 0.076 0.924 41 H 0.254 0.746 42 H 0.047 0.953 43 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.941 24.085 5.131 24.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.329 5.329 3 C 0.374 3.626 4 O -0.412 6.412 5 C -0.286 4.286 6 C -0.053 4.053 7 N -0.176 5.176 8 H 0.285 0.715 9 N -0.120 5.120 10 C 0.045 3.955 11 C -0.183 4.183 12 C -0.081 4.081 13 N -0.117 5.117 14 N -0.157 5.157 15 C -0.039 4.039 16 C -0.061 4.061 17 C -0.009 4.009 18 C 0.031 3.969 19 N -0.333 5.333 20 C -0.349 4.349 21 H 0.099 0.901 22 C -0.204 4.204 23 N -0.568 5.568 24 Si 0.743 3.257 25 H -0.216 1.216 26 H -0.216 1.216 27 H -0.205 1.205 28 C -0.019 4.019 29 H 0.076 0.924 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.210 0.790 33 H 0.202 0.798 34 H 0.094 0.906 35 H 0.105 0.895 36 H 0.108 0.892 37 H 0.194 0.806 38 H 0.135 0.865 39 H 0.049 0.951 40 H 0.094 0.906 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -1.398 24.840 5.904 25.570 hybrid contribution -1.270 -1.577 -0.955 2.239 sum -2.668 23.263 4.949 23.933 Atomic orbital electron populations 1.22137 0.80752 1.03148 1.01760 1.47849 1.06527 1.06000 1.72499 1.17250 0.86678 0.82147 0.76492 1.90790 1.13501 1.86974 1.49964 1.21373 0.96072 0.96810 1.14336 1.23392 0.96302 0.87408 0.98205 1.45873 1.16449 1.09950 1.45342 0.71482 1.77260 0.95739 1.21135 1.17826 1.20797 0.91383 0.89329 0.94000 1.17577 0.95238 0.94574 1.10883 1.23877 0.90396 0.99478 0.94353 1.77347 1.21207 0.89525 1.23657 1.48362 1.16645 1.09755 1.40988 1.21859 0.88731 0.89757 1.03504 1.22450 0.87563 0.99576 0.96480 1.24002 0.98128 0.79594 0.99203 1.22657 0.96776 0.83581 0.93905 1.45701 1.81948 1.02165 1.03500 1.18993 1.41298 0.80273 0.94295 0.90079 1.24792 1.02042 0.98199 0.95369 1.69814 1.54740 1.34220 0.97999 0.86101 0.77738 0.84849 0.76973 1.21641 1.21610 1.20548 1.22983 0.98037 0.87328 0.93602 0.92438 0.90599 0.90881 0.79015 0.79810 0.90622 0.89524 0.89163 0.80555 0.86479 0.95149 0.90586 0.93605 0.93461 0.94717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.79 7.66 59.85 0.46 1.25 16 2 N -0.60 -9.58 3.09 -177.08 -0.55 -10.12 16 3 C 0.59 9.74 7.20 -12.60 -0.09 9.65 16 4 O -0.54 -10.75 14.64 5.26 0.08 -10.67 16 5 C -0.27 -3.68 5.75 -102.95 -0.59 -4.27 16 6 C 0.10 0.91 9.60 -16.63 -0.16 0.75 16 7 N -0.47 -4.03 7.20 30.82 0.22 -3.81 16 8 H 0.44 2.03 8.96 -182.85 -1.64 0.39 16 9 N -0.30 -3.58 12.65 34.59 0.44 -3.14 16 10 C 0.21 2.94 7.27 -80.54 -0.59 2.36 16 11 C -0.17 -2.36 5.77 -105.36 -0.61 -2.97 16 12 C 0.11 1.63 10.46 -17.05 -0.18 1.45 16 13 N -0.30 -4.43 12.54 30.81 0.39 -4.05 16 14 N -0.38 -4.35 4.00 -67.88 -0.27 -4.62 16 15 C 0.10 0.66 11.46 59.85 0.69 1.34 16 16 C 0.09 1.01 11.45 -16.87 -0.19 0.82 16 17 C 0.09 1.87 4.41 -70.14 -0.31 1.56 16 18 C 0.16 3.65 7.02 -2.84 -0.02 3.63 16 19 N -0.61 -15.55 3.70 -177.86 -0.66 -16.21 16 20 C -0.22 -6.21 10.70 -15.06 -0.16 -6.37 16 21 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 22 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 23 N -0.92 -27.22 11.39 55.49 0.63 -26.59 16 24 Si 0.91 22.18 29.55 -169.99 -5.02 17.16 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 26 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 27 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 28 C 0.11 2.23 8.48 -2.96 -0.03 2.20 16 29 H 0.06 0.62 7.83 -51.93 -0.41 0.22 16 30 H 0.08 0.99 6.56 -51.93 -0.34 0.65 16 31 H 0.07 0.68 4.66 -51.93 -0.24 0.44 16 32 H 0.19 1.19 6.06 -52.49 -0.32 0.88 16 33 H 0.19 2.82 7.58 -52.49 -0.40 2.42 16 34 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.18 1.42 8.06 -52.48 -0.42 1.00 16 38 H 0.12 2.56 7.20 -51.93 -0.37 2.18 16 39 H 0.03 0.69 6.87 -51.93 -0.36 0.33 16 40 H 0.08 2.00 7.16 -51.93 -0.37 1.63 16 41 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 42 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.04 0.67 6.79 -51.93 -0.35 0.32 16 LS Contribution 359.26 15.07 5.41 5.41 Total: -1.00 -37.67 359.26 -7.67 -45.34 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -6.46 Total: 0.21 kcal Atomic # 6 Polarization: 12.96 SS G_CDS: -1.87 Total: 11.09 kcal Atomic # 7 Polarization: -68.73 SS G_CDS: 0.20 Total: -68.53 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.08 Total: -10.67 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -37.67 -7.67 -45.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044166579.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 244.914 kcal (2) G-P(sol) polarization free energy of solvation -37.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 207.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 199.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds