Wall clock time and date at job start Tue Mar 31 2020 05:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34784 * 119.99675 * 2 1 4 4 O 1.21620 * 119.99569 * 185.77505 * 3 2 1 5 5 C 1.47237 * 119.99786 * 5.77392 * 3 2 1 6 6 C 1.38035 * 126.81973 * 327.53061 * 5 3 2 7 7 N 1.34102 * 107.87906 * 180.02562 * 6 5 3 8 8 H 0.96995 * 125.15889 * 180.02562 * 7 6 5 9 9 N 1.39773 * 109.67935 * 359.75349 * 7 6 5 10 10 C 1.31340 * 109.09642 * 0.42732 * 9 7 6 11 11 C 1.48372 * 126.50914 * 179.85423 * 10 9 7 12 12 C 1.40886 * 126.22765 * 144.66928 * 11 10 9 13 13 N 1.30667 * 108.09287 * 180.02562 * 12 11 10 14 14 N 1.40006 * 108.53730 * 359.97438 * 13 12 11 15 15 C 1.46504 * 125.88779 * 179.73135 * 14 13 12 16 16 C 1.34818 * 108.22829 * 359.97438 * 14 13 12 17 17 C 1.46495 * 120.00395 * 180.02562 * 2 1 3 18 18 C 1.53948 * 113.74059 * 38.73526 * 17 2 1 19 19 N 1.47813 * 86.03785 * 222.08894 * 18 17 2 20 20 C 1.36941 * 134.45780 * 204.64961 * 19 18 17 21 21 H 1.07998 * 119.99803 * 179.86554 * 20 19 18 22 22 C 1.38810 * 119.99725 * 359.86273 * 20 19 18 23 23 N 1.31614 * 120.00215 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 119.99538 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.47072 * 89.99989 * 24 22 20 26 26 H 1.48502 * 109.46666 * 210.00013 * 24 22 20 27 27 H 1.48496 * 109.47078 * 329.99489 * 24 22 20 28 28 C 1.47582 * 91.05126 * 24.54993 * 19 18 17 29 29 H 1.09003 * 109.47010 * 94.76890 * 1 2 3 30 30 H 1.09001 * 109.46647 * 214.76717 * 1 2 3 31 31 H 1.08996 * 109.47183 * 334.76488 * 1 2 3 32 32 H 1.07993 * 126.06017 * 359.97438 * 6 5 3 33 33 H 1.07995 * 125.95638 * 359.97438 * 12 11 10 34 34 H 1.09000 * 109.47037 * 90.02477 * 15 14 13 35 35 H 1.08996 * 109.47409 * 210.02557 * 15 14 13 36 36 H 1.08997 * 109.47214 * 330.02727 * 15 14 13 37 37 H 1.08003 * 126.20164 * 179.97438 * 16 14 13 38 38 H 1.08995 * 112.95000 * 170.32879 * 17 2 1 39 39 H 1.08997 * 113.77248 * 336.35073 * 18 17 2 40 40 H 1.09004 * 113.76788 * 107.75003 * 18 17 2 41 41 H 0.97001 * 119.99886 * 180.02562 * 23 22 20 42 42 H 1.08997 * 113.76763 * 221.15264 * 28 19 18 43 43 H 1.09000 * 113.76666 * 89.75216 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3504 1.1700 -0.1060 5 6 1.4082 2.4391 0.1283 6 6 0.1407 2.7161 -0.3430 7 7 -0.1510 3.9843 -0.0189 8 1 -0.9821 4.4377 -0.2299 9 7 0.9219 4.5516 0.6744 10 6 1.8827 3.6626 0.7812 11 6 3.1964 3.8578 1.4428 12 6 3.9143 2.8884 2.1706 13 7 5.0203 3.4380 2.5972 14 7 5.0528 4.7684 2.1622 15 6 6.1206 5.7344 2.4324 16 6 3.9297 5.0088 1.4564 17 6 2.1976 -1.2686 -0.0006 18 6 1.5556 -2.3547 -0.8828 19 7 1.8611 -3.2880 0.2219 20 6 2.0640 -4.6396 0.3072 21 1 2.2810 -5.0937 1.2627 22 6 1.9907 -5.4258 -0.8344 23 7 1.7267 -4.8721 -1.9989 24 14 2.2668 -7.2696 -0.7179 25 1 0.9706 -7.9494 -0.4674 26 1 2.8473 -7.7646 -1.9919 27 1 3.2022 -7.5605 0.3982 28 6 1.8622 -2.1785 1.1951 29 1 -0.3633 -0.0854 -1.0241 30 1 -0.3633 -0.8442 0.5860 31 1 -0.3633 0.9296 0.4381 32 1 -0.5018 2.0330 -0.8785 33 1 3.6042 1.8689 2.3461 34 1 6.8673 5.6816 1.6402 35 1 5.7005 6.7395 2.4694 36 1 6.5885 5.5008 3.3888 37 1 3.6585 5.9434 0.9880 38 1 3.2669 -1.1418 -0.1691 39 1 0.4888 -2.2090 -1.0525 40 1 2.1091 -2.5603 -1.7991 41 1 1.6751 -5.4216 -2.7966 42 1 2.6600 -2.2438 1.9349 43 1 0.8856 -1.9809 1.6371 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044166579.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:35 Heat of formation + Delta-G solvation = 171.347585 kcal Electronic energy + Delta-G solvation = -27813.678750 eV Core-core repulsion = 23899.289575 eV Total energy + Delta-G solvation = -3914.389175 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.40398 -41.75215 -40.69696 -38.91838 -35.88310 -34.48611 -34.02727 -33.09158 -31.40355 -30.47646 -29.35772 -27.91764 -27.66614 -26.57041 -25.45670 -23.53253 -23.46729 -22.09432 -21.13867 -20.50004 -20.18004 -18.77632 -18.60081 -17.78097 -17.62398 -17.06434 -16.68210 -16.44203 -16.32358 -15.70115 -15.54942 -15.37636 -15.25620 -14.81187 -14.49759 -14.15263 -13.89718 -13.70786 -13.58684 -13.50453 -13.26922 -13.16540 -13.10891 -12.81786 -12.71396 -12.50828 -12.04203 -11.97799 -11.90584 -11.82550 -11.50222 -10.98781 -10.84793 -10.78128 -10.40171 -9.77393 -9.41922 -9.10136 -8.92414 -7.90379 -5.23975 0.61171 0.67833 1.08426 1.46953 1.49344 1.57944 1.60158 1.80180 2.00117 2.15198 2.45245 2.52888 3.29376 3.38400 3.47246 3.61855 3.86548 3.90126 3.94766 4.12646 4.27998 4.35192 4.38645 4.42554 4.47344 4.54971 4.58069 4.70955 4.71883 4.74921 4.80170 4.90963 4.93905 5.01519 5.23717 5.29762 5.32313 5.50669 5.55098 5.80232 5.93061 6.06831 6.34908 6.54101 6.63802 6.69024 6.91971 7.37480 7.59887 8.54197 9.26672 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.017210 B = 0.002850 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.566550 B = 9820.806349 C =11071.226733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.596 5.596 3 C 0.588 3.412 4 O -0.581 6.581 5 C -0.310 4.310 6 C 0.131 3.869 7 N -0.447 5.447 8 H 0.462 0.538 9 N -0.306 5.306 10 C 0.203 3.797 11 C -0.197 4.197 12 C 0.088 3.912 13 N -0.332 5.332 14 N -0.373 5.373 15 C 0.091 3.909 16 C 0.101 3.899 17 C 0.120 3.880 18 C 0.163 3.837 19 N -0.637 5.637 20 C -0.234 4.234 21 H 0.084 0.916 22 C -0.065 4.065 23 N -0.952 5.952 24 Si 0.980 3.020 25 H -0.283 1.283 26 H -0.295 1.295 27 H -0.270 1.270 28 C 0.115 3.885 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.107 0.893 32 H 0.232 0.768 33 H 0.167 0.833 34 H 0.085 0.915 35 H 0.123 0.877 36 H 0.093 0.907 37 H 0.214 0.786 38 H 0.090 0.910 39 H 0.043 0.957 40 H 0.036 0.964 41 H 0.249 0.751 42 H 0.047 0.953 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.875 26.309 5.386 27.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.328 5.328 3 C 0.378 3.622 4 O -0.461 6.461 5 C -0.325 4.325 6 C -0.021 4.021 7 N -0.154 5.154 8 H 0.311 0.689 9 N -0.128 5.128 10 C 0.034 3.966 11 C -0.211 4.211 12 C -0.099 4.099 13 N -0.153 5.153 14 N -0.153 5.153 15 C -0.048 4.048 16 C -0.049 4.049 17 C 0.015 3.985 18 C 0.037 3.963 19 N -0.364 5.364 20 C -0.363 4.363 21 H 0.102 0.898 22 C -0.258 4.258 23 N -0.600 5.600 24 Si 0.808 3.192 25 H -0.209 1.209 26 H -0.221 1.221 27 H -0.195 1.195 28 C -0.011 4.011 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.125 0.875 32 H 0.248 0.752 33 H 0.184 0.816 34 H 0.104 0.896 35 H 0.142 0.858 36 H 0.111 0.889 37 H 0.230 0.770 38 H 0.108 0.892 39 H 0.060 0.940 40 H 0.055 0.945 41 H 0.058 0.942 42 H 0.066 0.934 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.375 27.130 6.201 28.034 hybrid contribution -0.680 -2.103 -1.016 2.432 sum -4.055 25.028 5.185 25.879 Atomic orbital electron populations 1.22430 0.77917 1.04667 1.03233 1.47761 1.08113 1.04408 1.72481 1.17664 0.86272 0.83045 0.75214 1.90761 1.15746 1.87653 1.51989 1.21129 0.98033 0.95615 1.17737 1.23783 0.94747 0.87727 0.95799 1.45920 1.16426 1.09642 1.43437 0.68940 1.77216 0.96112 1.21055 1.18386 1.20830 0.91680 0.89691 0.94401 1.17833 0.96258 0.95181 1.11799 1.23718 0.91252 0.99341 0.95596 1.77233 1.21466 0.91674 1.24956 1.48769 1.17526 1.09060 1.39957 1.22299 0.88182 0.90287 1.04035 1.22968 0.86674 1.00028 0.95258 1.23208 0.96790 0.81050 0.97477 1.22524 0.96924 0.84483 0.92384 1.46010 1.82343 1.02359 1.05711 1.19373 1.40558 0.81800 0.94520 0.89784 1.25632 1.02531 1.02568 0.95105 1.69998 1.56175 1.35455 0.98419 0.85054 0.77801 0.79562 0.76760 1.20937 1.22110 1.19517 1.23077 0.99188 0.85582 0.93296 0.90548 0.91283 0.87531 0.75237 0.81604 0.89600 0.85847 0.88871 0.76981 0.89233 0.93980 0.94526 0.94160 0.93423 0.92103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.27 7.66 127.77 0.98 2.25 16 2 N -0.60 -18.89 3.09 -832.39 -2.57 -21.46 16 3 C 0.59 19.66 7.20 86.61 0.62 20.28 16 4 O -0.58 -24.54 14.64 -4.09 -0.06 -24.60 16 5 C -0.31 -7.97 5.75 -18.78 -0.11 -8.07 16 6 C 0.13 1.97 9.60 84.30 0.81 2.78 16 7 N -0.45 -5.86 7.20 -56.42 -0.41 -6.27 16 8 H 0.46 2.06 8.96 -213.54 -1.91 0.14 16 9 N -0.31 -6.52 12.65 -44.49 -0.56 -7.08 16 10 C 0.20 5.34 7.27 44.10 0.32 5.66 16 11 C -0.20 -5.52 5.77 -20.34 -0.12 -5.64 16 12 C 0.09 2.83 10.46 85.51 0.89 3.73 16 13 N -0.33 -10.26 12.54 -56.44 -0.71 -10.97 16 14 N -0.37 -8.30 4.00 -368.68 -1.48 -9.78 16 15 C 0.09 0.99 11.46 127.77 1.46 2.46 16 16 C 0.10 2.17 11.45 83.82 0.96 3.13 16 17 C 0.12 4.89 4.41 46.75 0.21 5.10 16 18 C 0.16 7.77 7.02 86.44 0.61 8.37 16 19 N -0.64 -33.28 3.70 -716.62 -2.65 -35.93 16 20 C -0.23 -13.36 10.70 84.03 0.90 -12.46 16 21 H 0.08 4.59 7.83 -2.91 -0.02 4.57 16 22 C -0.07 -3.75 5.50 84.86 0.47 -3.29 16 23 N -0.95 -57.69 11.39 21.65 0.25 -57.45 16 24 Si 0.98 46.18 29.55 68.60 2.03 48.21 16 25 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 26 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 27 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 28 C 0.11 4.77 8.48 86.49 0.73 5.50 16 29 H 0.08 1.39 7.83 -2.39 -0.02 1.37 16 30 H 0.07 1.63 6.56 -2.39 -0.02 1.61 16 31 H 0.11 1.56 4.66 -2.39 -0.01 1.55 16 32 H 0.23 1.61 6.06 -2.91 -0.02 1.59 16 33 H 0.17 5.65 7.58 -2.91 -0.02 5.63 16 34 H 0.09 0.79 8.14 -2.39 -0.02 0.78 16 35 H 0.12 0.45 8.14 -2.39 -0.02 0.43 16 36 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.21 2.78 8.06 -2.91 -0.02 2.75 16 38 H 0.09 4.17 7.20 -2.39 -0.02 4.15 16 39 H 0.04 1.90 6.87 -2.39 -0.02 1.88 16 40 H 0.04 2.02 7.16 -2.39 -0.02 2.00 16 41 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 42 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 43 H 0.06 2.26 6.79 -2.39 -0.02 2.25 16 Total: -1.00 -86.68 359.26 1.73 -84.95 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -0.84 Total: 10.56 kcal Atomic # 6 Polarization: 21.08 SS G_CDS: 8.74 Total: 29.82 kcal Atomic # 7 Polarization: -140.80 SS G_CDS: -8.13 Total: -148.93 kcal Atomic # 8 Polarization: -24.54 SS G_CDS: -0.06 Total: -24.60 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Total: -86.68 1.73 -84.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044166579.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 256.301 kcal (2) G-P(sol) polarization free energy of solvation -86.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 169.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 171.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds